Wall clock time and date at job start Tue Mar 31 2020 07:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39762 * 120.08693 * 198.02428 * 3 2 1 5 5 C 1.37738 * 119.89817 * 180.02562 * 4 3 2 6 6 C 1.38961 * 120.09790 * 0.02562 * 5 4 3 7 7 O 1.35752 * 119.90869 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00413 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47329 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.46939 * 65.00256 * 9 8 7 11 11 C 1.42895 * 114.00013 * 180.02562 * 10 9 8 12 12 H 1.08995 * 109.47547 * 29.99442 * 11 10 9 13 13 C 1.50701 * 109.47460 * 149.99804 * 11 10 9 14 14 H 1.07998 * 119.99938 * 5.33785 * 13 11 10 15 15 C 1.37878 * 120.00271 * 185.33267 * 13 11 10 16 16 N 1.31511 * 120.00501 * 185.32873 * 15 13 11 17 17 Si 1.86806 * 119.99905 * 5.33881 * 15 13 11 18 18 H 1.48501 * 109.46877 * 269.99933 * 17 15 13 19 19 H 1.48504 * 109.46978 * 29.99362 * 17 15 13 20 20 H 1.48491 * 109.47204 * 149.99433 * 17 15 13 21 21 C 1.53004 * 109.46727 * 269.99725 * 11 10 9 22 22 Cl 1.80293 * 109.47172 * 66.29631 * 21 11 10 23 23 C 1.38971 * 120.18822 * 0.26468 * 6 5 4 24 24 C 1.37729 * 120.09329 * 359.46104 * 23 6 5 25 25 H 1.07993 * 120.05455 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.94935 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.47037 * 60.00050 * 8 7 6 28 28 H 1.08999 * 109.46855 * 300.00088 * 8 7 6 29 29 H 1.08998 * 109.47100 * 305.00173 * 9 8 7 30 30 H 1.08995 * 109.47021 * 185.00010 * 9 8 7 31 31 H 0.97003 * 119.99620 * 355.00490 * 16 15 13 32 32 H 1.09008 * 109.47010 * 186.29277 * 21 11 10 33 33 H 1.08997 * 109.47254 * 306.29085 * 21 11 10 34 34 H 1.08000 * 119.95292 * 179.70389 * 23 6 5 35 35 H 1.08001 * 120.04834 * 180.24626 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.1509 0.3742 5 6 4.6455 1.1474 0.3723 6 6 5.3389 0.0026 -0.0015 7 8 6.6965 0.0035 -0.0025 8 6 7.3458 -1.2067 -0.3969 9 6 8.8626 -1.0148 -0.3366 10 8 9.2615 -0.7959 1.0181 11 6 10.6674 -0.6033 1.1861 12 1 11.0811 -0.1441 0.2883 13 6 10.9133 0.2966 2.3696 14 1 10.0866 0.6131 2.9883 15 6 12.1937 0.7159 2.6626 16 7 12.4237 1.4139 3.7532 17 14 13.6017 0.2928 1.5102 18 1 14.2003 -1.0044 1.9155 19 1 13.0895 0.1888 0.1202 20 1 14.6345 1.3576 1.5787 21 6 11.3424 -1.9555 1.4246 22 17 11.2072 -2.9654 -0.0628 23 6 4.6467 -1.1414 -0.3800 24 6 3.2694 -1.1483 -0.3755 25 1 2.7301 2.0412 0.6644 26 1 5.1874 2.0359 0.6609 27 1 7.0524 -1.4612 -1.4153 28 1 7.0540 -2.0120 0.2773 29 1 9.1441 -0.1532 -0.9420 30 1 9.3572 -1.9065 -0.7214 31 1 11.6839 1.6958 4.3136 32 1 12.3945 -1.7994 1.6634 33 1 10.8531 -2.4644 2.2551 34 1 5.1894 -2.0275 -0.6744 35 1 2.7321 -2.0391 -0.6660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224285767.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:08 Heat of formation + Delta-G solvation = -44.234121 kcal Electronic energy + Delta-G solvation = -20180.429238 eV Core-core repulsion = 16783.942066 eV Total energy + Delta-G solvation = -3396.487172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.37911 -38.27612 -37.34696 -36.24346 -35.20522 -33.34967 -31.64357 -31.11697 -30.21613 -28.81535 -24.85416 -23.95027 -23.49118 -21.78301 -20.89961 -19.12490 -18.34405 -17.82777 -16.50271 -16.23873 -15.66079 -15.00385 -14.78597 -14.55364 -14.15119 -14.07420 -13.81199 -13.71991 -13.56179 -13.03802 -12.85188 -12.65321 -12.55704 -12.29359 -12.22028 -11.80955 -11.41614 -11.08579 -10.98022 -10.90019 -10.75532 -10.26298 -9.95978 -9.68513 -9.39014 -9.15899 -8.72448 -8.48055 -8.40262 -6.74866 -4.41707 0.64200 1.04094 2.48563 2.75766 2.87933 3.08668 3.15099 3.24894 3.36086 3.65291 3.73750 4.19469 4.29844 4.48432 4.56840 4.85607 4.97460 5.01071 5.19399 5.20610 5.28683 5.47871 5.66891 5.72107 5.81582 5.87342 5.92808 5.98325 6.02955 6.06111 6.08413 6.37337 6.75663 7.25555 7.32171 7.48144 7.95734 8.18162 8.73098 9.29453 10.66315 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.003184 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.002076 B = 8792.955307 C = 9694.888667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.265 3.735 3 C -0.087 4.087 4 C -0.028 4.028 5 C -0.156 4.156 6 C 0.174 3.826 7 O -0.291 6.291 8 C 0.062 3.938 9 C 0.045 3.955 10 O -0.367 6.367 11 C 0.189 3.811 12 H 0.032 0.968 13 C -0.591 4.591 14 H 0.074 0.926 15 C 0.032 3.968 16 N -0.893 5.893 17 Si 1.036 2.964 18 H -0.277 1.277 19 H -0.271 1.271 20 H -0.278 1.278 21 C -0.047 4.047 22 Cl -0.238 7.238 23 C -0.218 4.218 24 C -0.026 4.026 25 H 0.138 0.862 26 H 0.144 0.856 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.274 0.726 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.139 0.861 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.514 -5.308 -9.830 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.050 4.050 3 C -0.090 4.090 4 C -0.048 4.048 5 C -0.175 4.175 6 C 0.125 3.875 7 O -0.202 6.202 8 C -0.013 4.013 9 C -0.032 4.032 10 O -0.286 6.286 11 C 0.131 3.869 12 H 0.050 0.950 13 C -0.629 4.629 14 H 0.092 0.908 15 C -0.174 4.174 16 N -0.526 5.526 17 Si 0.864 3.136 18 H -0.204 1.204 19 H -0.197 1.197 20 H -0.204 1.204 21 C -0.109 4.109 22 Cl -0.212 7.212 23 C -0.237 4.237 24 C -0.046 4.046 25 H 0.156 0.844 26 H 0.162 0.838 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.157 0.843 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.603 -5.087 -9.895 15.369 hybrid contribution -1.003 -0.519 0.010 1.130 sum -11.606 -5.606 -9.885 16.243 Atomic orbital electron populations 1.81247 1.12145 1.07710 1.09924 1.25692 0.92585 0.93565 0.93164 1.15876 0.84270 0.96743 1.12148 1.20949 0.93088 0.96544 0.94248 1.20443 0.93094 0.98221 1.05713 1.19459 0.83509 0.93661 0.90856 1.86275 1.15090 1.37672 1.81201 1.23093 0.92905 0.85739 0.99552 1.22847 0.91013 1.01800 0.87553 1.87973 1.25274 1.92376 1.22947 1.20505 0.78184 0.89411 0.98761 0.95034 1.22019 0.96611 1.30806 1.13456 0.90822 1.25780 0.99398 0.94482 0.97778 1.70790 1.35469 1.34754 1.11606 0.84125 0.76288 0.77103 0.76116 1.20389 1.19655 1.20377 1.26468 1.04046 0.94369 0.86026 1.98622 1.98397 1.75863 1.48312 1.21237 0.94710 0.98973 1.08768 1.20902 0.93358 0.96363 0.94009 0.84447 0.83827 0.90801 0.90894 0.92971 0.89889 0.91531 0.89380 0.88683 0.84345 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.61 18.54 41.84 0.78 -4.84 16 2 C 0.26 2.84 15.33 -22.47 -0.34 2.49 16 3 C -0.09 -0.80 5.74 -106.83 -0.61 -1.41 16 4 C -0.03 -0.25 9.75 -39.20 -0.38 -0.63 16 5 C -0.16 -1.63 9.97 -39.50 -0.39 -2.02 16 6 C 0.17 2.03 6.69 -39.04 -0.26 1.77 16 7 O -0.29 -4.21 10.09 -23.81 -0.24 -4.45 16 8 C 0.06 0.78 5.12 37.16 0.19 0.98 16 9 C 0.05 0.72 5.93 37.16 0.22 0.95 16 10 O -0.37 -7.71 9.92 -40.08 -0.40 -8.11 16 11 C 0.19 4.25 1.94 -27.88 -0.05 4.20 16 12 H 0.03 0.72 6.29 -51.93 -0.33 0.39 16 13 C -0.59 -15.75 9.24 -34.44 -0.32 -16.07 16 14 H 0.07 2.17 8.04 -52.49 -0.42 1.75 16 15 C 0.03 0.87 5.43 -17.82 -0.10 0.77 16 16 N -0.89 -25.78 13.70 55.43 0.76 -25.02 16 17 Si 1.04 23.07 25.33 -169.99 -4.31 18.77 16 18 H -0.28 -5.77 6.77 56.52 0.38 -5.39 16 19 H -0.27 -5.59 6.36 56.52 0.36 -5.23 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 C -0.05 -0.93 5.92 37.16 0.22 -0.71 16 22 Cl -0.24 -4.05 26.16 -51.86 -1.36 -5.40 16 23 C -0.22 -2.05 9.01 -39.50 -0.36 -2.41 16 24 C -0.03 -0.22 9.75 -39.20 -0.38 -0.60 16 25 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 26 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 27 H 0.07 0.69 7.64 -51.93 -0.40 0.29 16 28 H 0.07 0.87 7.67 -51.93 -0.40 0.48 16 29 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.08 1.25 5.15 -51.93 -0.27 0.98 16 31 H 0.27 7.89 8.72 -40.82 -0.36 7.54 16 32 H 0.09 1.80 4.38 -51.92 -0.23 1.57 16 33 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.14 1.07 6.28 -52.49 -0.33 0.74 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 318.34 15.07 4.80 4.80 Total: -1.00 -29.65 318.34 -6.23 -35.88 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.69 Total: 1.08 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.57 Total: -12.70 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 1.53 Total: -29.86 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.64 Total: -12.56 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.31 Total: 18.77 kcal Atomic # 17 Polarization: -4.05 SS G_CDS: -1.36 Total: -5.40 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.65 -6.23 -35.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224285767.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.353 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds