Wall clock time and date at job start Tue Mar 31 2020 07:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39762 * 120.08693 * 198.02428 * 3 2 1 5 5 C 1.37738 * 119.89817 * 180.02562 * 4 3 2 6 6 C 1.38961 * 120.09790 * 0.02562 * 5 4 3 7 7 O 1.35752 * 119.90869 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00413 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47329 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.46939 * 65.00256 * 9 8 7 11 11 C 1.42895 * 114.00013 * 180.02562 * 10 9 8 12 12 H 1.08995 * 109.47547 * 29.99442 * 11 10 9 13 13 C 1.50701 * 109.47460 * 149.99804 * 11 10 9 14 14 H 1.07998 * 119.99938 * 5.33785 * 13 11 10 15 15 C 1.37878 * 120.00271 * 185.33267 * 13 11 10 16 16 N 1.31511 * 120.00501 * 185.32873 * 15 13 11 17 17 Si 1.86806 * 119.99905 * 5.33881 * 15 13 11 18 18 H 1.48501 * 109.46877 * 269.99933 * 17 15 13 19 19 H 1.48504 * 109.46978 * 29.99362 * 17 15 13 20 20 H 1.48491 * 109.47204 * 149.99433 * 17 15 13 21 21 C 1.53004 * 109.46727 * 269.99725 * 11 10 9 22 22 Cl 1.80293 * 109.47172 * 66.29631 * 21 11 10 23 23 C 1.38971 * 120.18822 * 0.26468 * 6 5 4 24 24 C 1.37729 * 120.09329 * 359.46104 * 23 6 5 25 25 H 1.07993 * 120.05455 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.94935 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.47037 * 60.00050 * 8 7 6 28 28 H 1.08999 * 109.46855 * 300.00088 * 8 7 6 29 29 H 1.08998 * 109.47100 * 305.00173 * 9 8 7 30 30 H 1.08995 * 109.47021 * 185.00010 * 9 8 7 31 31 H 0.97003 * 119.99620 * 355.00490 * 16 15 13 32 32 H 1.09008 * 109.47010 * 186.29277 * 21 11 10 33 33 H 1.08997 * 109.47254 * 306.29085 * 21 11 10 34 34 H 1.08000 * 119.95292 * 179.70389 * 23 6 5 35 35 H 1.08001 * 120.04834 * 180.24626 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.1509 0.3742 5 6 4.6455 1.1474 0.3723 6 6 5.3389 0.0026 -0.0015 7 8 6.6965 0.0035 -0.0025 8 6 7.3458 -1.2067 -0.3969 9 6 8.8626 -1.0148 -0.3366 10 8 9.2615 -0.7959 1.0181 11 6 10.6674 -0.6033 1.1861 12 1 11.0811 -0.1441 0.2883 13 6 10.9133 0.2966 2.3696 14 1 10.0866 0.6131 2.9883 15 6 12.1937 0.7159 2.6626 16 7 12.4237 1.4139 3.7532 17 14 13.6017 0.2928 1.5102 18 1 14.2003 -1.0044 1.9155 19 1 13.0895 0.1888 0.1202 20 1 14.6345 1.3576 1.5787 21 6 11.3424 -1.9555 1.4246 22 17 11.2072 -2.9654 -0.0628 23 6 4.6467 -1.1414 -0.3800 24 6 3.2694 -1.1483 -0.3755 25 1 2.7301 2.0412 0.6644 26 1 5.1874 2.0359 0.6609 27 1 7.0524 -1.4612 -1.4153 28 1 7.0540 -2.0120 0.2773 29 1 9.1441 -0.1532 -0.9420 30 1 9.3572 -1.9065 -0.7214 31 1 11.6839 1.6958 4.3136 32 1 12.3945 -1.7994 1.6634 33 1 10.8531 -2.4644 2.2551 34 1 5.1894 -2.0275 -0.6744 35 1 2.7321 -2.0391 -0.6660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224285767.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:07 Heat of formation + Delta-G solvation = -62.097655 kcal Electronic energy + Delta-G solvation = -20181.203859 eV Core-core repulsion = 16783.942066 eV Total energy + Delta-G solvation = -3397.261793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23214 -39.40054 -38.67930 -37.17381 -36.68792 -35.27538 -32.73024 -32.12674 -31.40443 -30.06270 -26.73177 -24.94071 -24.29299 -22.82367 -22.62744 -19.92295 -19.80009 -19.26755 -17.90677 -17.17513 -16.95663 -16.16935 -16.00596 -15.66870 -15.37353 -15.06091 -15.00222 -14.73735 -14.53718 -14.50311 -14.43475 -14.01618 -13.72235 -13.37121 -13.22773 -13.06886 -12.74512 -12.60183 -12.41711 -11.95625 -11.86239 -11.68543 -11.58630 -11.24875 -11.02307 -10.75681 -10.10304 -10.07176 -9.24534 -8.89275 -6.58084 -0.15234 0.32815 1.29748 1.40817 1.49105 1.63117 1.63608 1.92471 2.19066 2.36540 2.87399 2.90334 2.91907 2.97149 3.75065 3.86801 4.03536 4.08592 4.12760 4.16428 4.25041 4.36500 4.43850 4.51631 4.53701 4.70480 4.75567 4.99107 5.03824 5.08158 5.26485 5.33045 5.55493 5.62281 5.88679 6.23581 6.39868 6.48099 6.70619 7.24650 8.50549 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.003184 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.002076 B = 8792.955307 C = 9694.888667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.288 3.712 3 C -0.089 4.089 4 C -0.019 4.019 5 C -0.170 4.170 6 C 0.151 3.849 7 O -0.325 6.325 8 C 0.063 3.937 9 C 0.037 3.963 10 O -0.391 6.391 11 C 0.194 3.806 12 H 0.034 0.966 13 C -0.600 4.600 14 H 0.026 0.974 15 C -0.012 4.012 16 N -0.926 5.926 17 Si 1.069 2.931 18 H -0.249 1.249 19 H -0.243 1.243 20 H -0.280 1.280 21 C -0.043 4.043 22 Cl -0.202 7.202 23 C -0.214 4.214 24 C -0.017 4.017 25 H 0.157 0.843 26 H 0.139 0.861 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.258 0.742 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 -7.379 -12.125 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.026 4.026 3 C -0.093 4.093 4 C -0.040 4.040 5 C -0.189 4.189 6 C 0.104 3.896 7 O -0.238 6.238 8 C -0.012 4.012 9 C -0.039 4.039 10 O -0.311 6.311 11 C 0.136 3.864 12 H 0.052 0.948 13 C -0.638 4.638 14 H 0.044 0.956 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.888 3.112 18 H -0.174 1.174 19 H -0.167 1.167 20 H -0.206 1.206 21 C -0.106 4.106 22 Cl -0.176 7.176 23 C -0.232 4.232 24 C -0.037 4.037 25 H 0.175 0.825 26 H 0.157 0.843 27 H 0.132 0.868 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.177 0.823 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.713 -7.178 -12.200 17.752 hybrid contribution -1.138 0.122 0.671 1.327 sum -11.851 -7.056 -11.528 17.976 Atomic orbital electron populations 1.81278 1.13313 1.09039 1.11429 1.25767 0.92544 0.92351 0.91954 1.15962 0.83492 0.97352 1.12524 1.21104 0.92434 0.97225 0.93217 1.20544 0.93761 0.98176 1.06414 1.19727 0.82625 0.94998 0.92257 1.86209 1.16757 1.38619 1.82174 1.23163 0.90514 0.85433 1.02040 1.23126 0.93719 1.02126 0.84951 1.87934 1.24244 1.92590 1.26292 1.20205 0.79574 0.90055 0.96606 0.94806 1.22140 0.95412 1.31988 1.14261 0.95577 1.27223 1.02344 0.93488 0.98142 1.70916 1.34846 1.37164 1.13174 0.83782 0.73554 0.78175 0.75649 1.17379 1.16683 1.20634 1.25896 1.03533 0.93759 0.87408 1.98620 1.98381 1.74492 1.46075 1.21422 0.95034 0.98754 1.08023 1.21175 0.93066 0.96843 0.92619 0.82548 0.84274 0.86810 0.90198 0.93371 0.88586 0.93314 0.89372 0.88628 0.82322 0.82321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.73 18.54 19.00 0.35 -11.38 16 2 C 0.29 5.68 15.33 88.33 1.35 7.03 16 3 C -0.09 -1.47 5.74 -21.30 -0.12 -1.59 16 4 C -0.02 -0.32 9.75 22.52 0.22 -0.10 16 5 C -0.17 -3.46 9.97 22.32 0.22 -3.24 16 6 C 0.15 3.37 6.69 22.62 0.15 3.52 16 7 O -0.32 -9.20 10.09 -86.13 -0.87 -10.07 16 8 C 0.06 1.46 5.12 71.98 0.37 1.83 16 9 C 0.04 1.13 5.93 71.98 0.43 1.56 16 10 O -0.39 -16.37 9.92 -144.34 -1.43 -17.80 16 11 C 0.19 8.60 1.94 29.85 0.06 8.66 16 12 H 0.03 1.49 6.29 -2.39 -0.02 1.47 16 13 C -0.60 -33.01 9.24 25.60 0.24 -32.78 16 14 H 0.03 1.63 8.04 -2.91 -0.02 1.61 16 15 C -0.01 -0.68 5.43 84.66 0.46 -0.22 16 16 N -0.93 -55.42 13.70 21.45 0.29 -55.12 16 17 Si 1.07 45.20 25.33 68.60 1.74 46.93 16 18 H -0.25 -9.40 6.77 99.48 0.67 -8.73 16 19 H -0.24 -9.10 6.36 99.48 0.63 -8.47 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 C -0.04 -1.64 5.92 71.98 0.43 -1.22 16 22 Cl -0.20 -6.20 26.16 -2.72 -0.07 -6.28 16 23 C -0.21 -3.46 9.01 22.33 0.20 -3.26 16 24 C -0.02 -0.23 9.75 22.52 0.22 -0.01 16 25 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 26 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 27 H 0.11 1.70 7.64 -2.39 -0.02 1.68 16 28 H 0.08 1.72 7.67 -2.39 -0.02 1.70 16 29 H 0.05 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.10 2.62 5.15 -2.39 -0.01 2.61 16 31 H 0.26 15.74 8.72 -92.71 -0.81 14.93 16 32 H 0.09 3.38 4.38 -2.38 -0.01 3.37 16 33 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.16 1.86 6.28 -2.91 -0.02 1.84 16 35 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -66.84 318.34 5.21 -61.63 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.98 Total: 11.89 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 4.22 Total: -19.81 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: 0.65 Total: -66.50 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -2.30 Total: -27.87 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.74 Total: 46.93 kcal Atomic # 17 Polarization: -6.20 SS G_CDS: -0.07 Total: -6.28 kcal Total: -66.84 5.21 -61.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224285767.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.467 kcal (2) G-P(sol) polarization free energy of solvation -66.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds