Wall clock time and date at job start Tue Mar 31 2020 07:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37950 * 119.89632 * 2 1 4 4 C 1.38697 * 120.31475 * 180.02562 * 3 2 1 5 5 O 1.35977 * 120.14743 * 180.02562 * 4 3 2 6 6 C 1.42892 * 117.00352 * 175.96779 * 5 4 3 7 7 H 1.09003 * 109.47087 * 27.14073 * 6 5 4 8 8 C 1.50697 * 109.47259 * 147.14426 * 6 5 4 9 9 H 1.08005 * 119.99925 * 34.54614 * 8 6 5 10 10 C 1.37874 * 120.00344 * 214.54073 * 8 6 5 11 11 N 1.31509 * 120.00506 * 184.20641 * 10 8 6 12 12 Si 1.86803 * 119.99852 * 4.21111 * 10 8 6 13 13 H 1.48500 * 109.47521 * 94.06986 * 12 10 8 14 14 H 1.48499 * 109.47318 * 214.07210 * 12 10 8 15 15 H 1.48505 * 109.47086 * 334.07091 * 12 10 8 16 16 C 1.53002 * 109.46973 * 267.14404 * 6 5 4 17 17 Cl 1.80300 * 109.47183 * 64.81577 * 16 6 5 18 18 C 1.38869 * 119.71456 * 0.27386 * 4 3 2 19 19 C 1.37623 * 119.87036 * 359.45129 * 18 4 3 20 20 C 1.38935 * 120.85078 * 0.55447 * 19 18 4 21 21 N 1.39745 * 110.18153 * 179.72011 * 20 19 18 22 22 C 1.34363 * 112.22055 * 359.97438 * 21 20 19 23 23 O 1.21286 * 126.43144 * 180.02562 * 22 21 20 24 24 C 1.51141 * 132.79241 * 180.18883 * 19 18 4 25 25 H 1.08996 * 109.47122 * 90.00070 * 1 2 3 26 26 H 1.09007 * 109.46924 * 209.99742 * 1 2 3 27 27 H 1.08999 * 109.47382 * 329.99435 * 1 2 3 28 28 H 1.08001 * 119.84187 * 0.04606 * 3 2 1 29 29 H 0.97003 * 120.00317 * 180.02562 * 11 10 8 30 30 H 1.09000 * 109.47440 * 304.81069 * 16 6 5 31 31 H 1.09004 * 109.47251 * 184.81407 * 16 6 5 32 32 H 1.08002 * 120.07014 * 179.69715 * 18 4 3 33 33 H 0.97009 * 123.88641 * 179.97438 * 21 20 19 34 34 H 1.08997 * 110.50362 * 61.67254 * 24 19 18 35 35 H 1.09004 * 110.62027 * 299.03411 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1959 0.0000 4 6 3.5815 1.2061 -0.0005 5 8 4.2558 2.3869 0.0000 6 6 5.6804 2.3204 0.0889 7 1 6.0267 1.3745 -0.3275 8 6 6.2859 3.4622 -0.6861 9 1 5.7846 4.4183 -0.7193 10 6 7.4799 3.2865 -1.3527 11 7 8.0501 4.3042 -1.9598 12 14 8.2877 1.6026 -1.3936 13 1 7.8781 0.8869 -2.6286 14 1 9.7641 1.7614 -1.3802 15 1 7.8631 0.8209 -0.2046 16 6 6.1049 2.4177 1.5556 17 17 5.4985 0.9767 2.4537 18 6 4.2786 0.0050 -0.0068 19 6 3.5906 -1.1869 -0.0011 20 6 2.2015 -1.2076 -0.0005 21 7 1.7390 -2.5263 -0.0007 22 6 2.7446 -3.4174 -0.0018 23 8 2.6365 -4.6255 -0.0027 24 6 4.0379 -2.6306 -0.0016 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6503 2.1288 0.0008 29 1 8.8900 4.1804 -2.4292 30 1 5.6864 3.3228 1.9958 31 1 7.1926 2.4532 1.6175 32 1 5.3587 0.0063 -0.0122 33 1 0.8001 -2.7702 0.0000 34 1 4.6189 -2.8506 0.8940 35 1 4.6192 -2.8520 -0.8967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225413887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:04 Heat of formation + Delta-G solvation = -53.996984 kcal Electronic energy + Delta-G solvation = -21488.935488 eV Core-core repulsion = 18092.024967 eV Total energy + Delta-G solvation = -3396.910522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.32534 -39.20434 -37.59214 -35.40821 -34.94252 -33.35285 -33.05218 -30.78355 -29.50466 -27.63364 -26.68885 -25.43732 -22.41694 -21.46766 -21.01712 -20.23140 -18.08908 -17.36915 -16.74819 -16.56858 -15.98181 -15.27877 -14.98004 -14.43057 -14.16688 -13.75734 -13.57819 -13.50924 -13.20198 -12.98822 -12.85735 -12.82339 -12.60445 -12.12495 -11.97745 -11.77905 -11.61113 -11.19629 -10.96279 -10.71466 -10.39488 -10.18393 -10.11784 -9.81516 -9.44493 -9.28168 -8.95472 -8.50126 -7.18785 -6.53065 -4.61070 1.46397 1.47625 2.55368 2.88261 3.02770 3.06184 3.08682 3.11725 3.91139 3.98370 4.00277 4.22280 4.49011 4.81257 4.91227 5.14823 5.32969 5.36196 5.38955 5.46764 5.54703 5.65450 5.72286 5.80526 5.88051 6.00277 6.12226 6.28757 6.38353 6.49206 6.58332 6.79827 6.85698 7.05323 7.11866 7.83062 8.00185 8.28948 8.60583 9.03164 10.57390 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.005461 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.446343 B = 5125.642814 C = 5522.329649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.064 4.064 3 C -0.136 4.136 4 C 0.150 3.850 5 O -0.297 6.297 6 C 0.173 3.827 7 H 0.053 0.947 8 C -0.524 4.524 9 H 0.091 0.909 10 C 0.087 3.913 11 N -0.868 5.868 12 Si 0.859 3.141 13 H -0.266 1.266 14 H -0.275 1.275 15 H -0.256 1.256 16 C -0.039 4.039 17 Cl -0.228 7.228 18 C -0.154 4.154 19 C -0.096 4.096 20 C 0.075 3.925 21 N -0.653 5.653 22 C 0.529 3.471 23 O -0.522 6.522 24 C -0.116 4.116 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.274 0.726 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.407 0.593 34 H 0.121 0.879 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -8.106 4.313 12.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.067 4.067 3 C -0.155 4.155 4 C 0.102 3.898 5 O -0.210 6.210 6 C 0.118 3.882 7 H 0.071 0.929 8 C -0.561 4.561 9 H 0.109 0.891 10 C -0.119 4.119 11 N -0.503 5.503 12 Si 0.684 3.316 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.180 1.180 16 C -0.102 4.102 17 Cl -0.202 7.202 18 C -0.173 4.173 19 C -0.098 4.098 20 C -0.020 4.020 21 N -0.296 5.296 22 C 0.317 3.683 23 O -0.398 6.398 24 C -0.156 4.156 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.245 0.755 34 H 0.139 0.861 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.017 -8.609 4.252 13.172 hybrid contribution 0.351 -0.961 0.004 1.023 sum -8.666 -9.571 4.256 13.595 Atomic orbital electron populations 1.20697 0.91010 1.02634 1.02296 1.18802 0.95357 0.89555 1.02983 1.19976 0.91278 0.97338 1.06929 1.18934 0.91646 0.85826 0.93401 1.86333 1.22828 1.25833 1.85988 1.20931 0.76242 0.99985 0.91062 0.92924 1.20674 1.06469 0.97592 1.31347 0.89110 1.24952 0.96386 0.96966 0.93638 1.69831 1.18020 1.30457 1.31980 0.87087 0.79798 0.84611 0.80075 1.19094 1.20074 1.18045 1.25985 1.01733 0.87792 0.94648 1.98675 1.90753 1.50404 1.80393 1.20486 1.00880 0.90213 1.05728 1.19381 0.92440 0.93903 1.04114 1.17669 0.92862 0.83965 1.07510 1.43552 1.09894 1.05135 1.71056 1.20538 0.86960 0.86204 0.74615 1.90781 1.86198 1.12135 1.50707 1.21045 0.97042 0.91359 1.06106 0.91116 0.92303 0.90931 0.84712 0.91541 0.88709 0.88443 0.84609 0.75529 0.86137 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.96 36.01 0.36 -0.69 16 2 C -0.06 -0.85 5.90 -104.33 -0.62 -1.47 16 3 C -0.14 -2.08 9.61 -39.52 -0.38 -2.45 16 4 C 0.15 2.70 5.94 -39.18 -0.23 2.46 16 5 O -0.30 -6.17 9.73 -19.67 -0.19 -6.36 16 6 C 0.17 3.69 1.80 -27.88 -0.05 3.64 16 7 H 0.05 1.12 2.38 -51.93 -0.12 1.00 16 8 C -0.52 -13.19 9.24 -34.44 -0.32 -13.51 16 9 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 10 C 0.09 2.23 5.47 -17.82 -0.10 2.13 16 11 N -0.87 -23.66 13.96 55.43 0.77 -22.89 16 12 Si 0.86 18.56 27.26 -169.99 -4.63 13.93 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.26 -5.14 6.44 56.52 0.36 -4.78 16 16 C -0.04 -0.73 6.32 37.16 0.23 -0.50 16 17 Cl -0.23 -3.98 25.66 -51.86 -1.33 -5.31 16 18 C -0.15 -2.64 7.06 -39.57 -0.28 -2.92 16 19 C -0.10 -1.44 6.34 -104.37 -0.66 -2.10 16 20 C 0.08 1.04 6.81 -83.60 -0.57 0.47 16 21 N -0.65 -8.06 5.81 -9.66 -0.06 -8.12 16 22 C 0.53 7.40 8.71 -10.83 -0.09 7.31 16 23 O -0.52 -8.73 18.03 5.55 0.10 -8.63 16 24 C -0.12 -1.51 6.87 -28.48 -0.20 -1.70 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.48 7.58 -51.92 -0.39 0.09 16 27 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 31 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 32 H 0.14 2.44 5.19 -52.49 -0.27 2.17 16 33 H 0.41 4.05 8.47 -40.82 -0.35 3.70 16 34 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 307.97 15.07 4.64 4.64 Total: -1.00 -28.25 307.97 -7.29 -35.54 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.69 Total: 6.51 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -2.90 Total: -9.32 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.72 Total: -31.00 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.09 Total: -14.99 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -4.63 Total: 13.93 kcal Atomic # 17 Polarization: -3.98 SS G_CDS: -1.33 Total: -5.31 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.25 -7.29 -35.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225413887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.459 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds