Wall clock time and date at job start Tue Mar 31 2020 07:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37950 * 119.89632 * 2 1 4 4 C 1.38697 * 120.31475 * 180.02562 * 3 2 1 5 5 O 1.35977 * 120.14743 * 180.02562 * 4 3 2 6 6 C 1.42892 * 117.00352 * 175.96779 * 5 4 3 7 7 H 1.09003 * 109.47087 * 27.14073 * 6 5 4 8 8 C 1.50697 * 109.47259 * 147.14426 * 6 5 4 9 9 H 1.08005 * 119.99925 * 34.54614 * 8 6 5 10 10 C 1.37874 * 120.00344 * 214.54073 * 8 6 5 11 11 N 1.31509 * 120.00506 * 184.20641 * 10 8 6 12 12 Si 1.86803 * 119.99852 * 4.21111 * 10 8 6 13 13 H 1.48500 * 109.47521 * 94.06986 * 12 10 8 14 14 H 1.48499 * 109.47318 * 214.07210 * 12 10 8 15 15 H 1.48505 * 109.47086 * 334.07091 * 12 10 8 16 16 C 1.53002 * 109.46973 * 267.14404 * 6 5 4 17 17 Cl 1.80300 * 109.47183 * 64.81577 * 16 6 5 18 18 C 1.38869 * 119.71456 * 0.27386 * 4 3 2 19 19 C 1.37623 * 119.87036 * 359.45129 * 18 4 3 20 20 C 1.38935 * 120.85078 * 0.55447 * 19 18 4 21 21 N 1.39745 * 110.18153 * 179.72011 * 20 19 18 22 22 C 1.34363 * 112.22055 * 359.97438 * 21 20 19 23 23 O 1.21286 * 126.43144 * 180.02562 * 22 21 20 24 24 C 1.51141 * 132.79241 * 180.18883 * 19 18 4 25 25 H 1.08996 * 109.47122 * 90.00070 * 1 2 3 26 26 H 1.09007 * 109.46924 * 209.99742 * 1 2 3 27 27 H 1.08999 * 109.47382 * 329.99435 * 1 2 3 28 28 H 1.08001 * 119.84187 * 0.04606 * 3 2 1 29 29 H 0.97003 * 120.00317 * 180.02562 * 11 10 8 30 30 H 1.09000 * 109.47440 * 304.81069 * 16 6 5 31 31 H 1.09004 * 109.47251 * 184.81407 * 16 6 5 32 32 H 1.08002 * 120.07014 * 179.69715 * 18 4 3 33 33 H 0.97009 * 123.88641 * 179.97438 * 21 20 19 34 34 H 1.08997 * 110.50362 * 61.67254 * 24 19 18 35 35 H 1.09004 * 110.62027 * 299.03411 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1959 0.0000 4 6 3.5815 1.2061 -0.0005 5 8 4.2558 2.3869 0.0000 6 6 5.6804 2.3204 0.0889 7 1 6.0267 1.3745 -0.3275 8 6 6.2859 3.4622 -0.6861 9 1 5.7846 4.4183 -0.7193 10 6 7.4799 3.2865 -1.3527 11 7 8.0501 4.3042 -1.9598 12 14 8.2877 1.6026 -1.3936 13 1 7.8781 0.8869 -2.6286 14 1 9.7641 1.7614 -1.3802 15 1 7.8631 0.8209 -0.2046 16 6 6.1049 2.4177 1.5556 17 17 5.4985 0.9767 2.4537 18 6 4.2786 0.0050 -0.0068 19 6 3.5906 -1.1869 -0.0011 20 6 2.2015 -1.2076 -0.0005 21 7 1.7390 -2.5263 -0.0007 22 6 2.7446 -3.4174 -0.0018 23 8 2.6365 -4.6255 -0.0027 24 6 4.0379 -2.6306 -0.0016 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6503 2.1288 0.0008 29 1 8.8900 4.1804 -2.4292 30 1 5.6864 3.3228 1.9958 31 1 7.1926 2.4532 1.6175 32 1 5.3587 0.0063 -0.0122 33 1 0.8001 -2.7702 0.0000 34 1 4.6189 -2.8506 0.8940 35 1 4.6192 -2.8520 -0.8967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225413887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:03 Heat of formation + Delta-G solvation = -71.337373 kcal Electronic energy + Delta-G solvation = -21489.687424 eV Core-core repulsion = 18092.024967 eV Total energy + Delta-G solvation = -3397.662457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.45688 -40.56432 -38.87827 -36.81173 -36.22333 -35.09709 -34.21607 -32.41033 -30.64024 -28.81586 -27.71291 -27.23190 -23.84886 -22.69482 -22.10464 -21.54927 -19.67432 -18.68786 -18.32219 -17.76661 -17.08536 -16.83755 -16.32439 -15.86017 -15.50867 -15.06093 -14.83327 -14.72717 -14.51071 -14.49568 -14.07336 -13.91094 -13.85236 -13.47713 -13.18438 -12.97797 -12.85180 -12.78426 -12.47185 -12.00899 -11.85883 -11.73505 -11.41545 -11.30569 -11.08619 -10.89028 -10.59021 -9.64322 -8.48167 -8.44011 -6.61844 0.27373 0.31284 1.26182 1.32713 1.39976 1.42787 1.43202 2.03779 2.19142 2.47867 2.76601 2.96014 3.12471 3.39069 3.78826 4.03228 4.13203 4.19785 4.25808 4.36340 4.40811 4.42859 4.53329 4.65639 4.84583 4.90263 4.94114 5.10794 5.18053 5.22386 5.32566 5.44779 5.60137 5.80662 5.87961 6.03002 6.50826 6.78199 6.96391 7.08144 8.66677 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.005461 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.446343 B = 5125.642814 C = 5522.329649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.054 4.054 3 C -0.140 4.140 4 C 0.119 3.881 5 O -0.319 6.319 6 C 0.181 3.819 7 H 0.057 0.943 8 C -0.534 4.534 9 H 0.046 0.954 10 C 0.039 3.961 11 N -0.918 5.918 12 Si 0.917 3.083 13 H -0.263 1.263 14 H -0.271 1.271 15 H -0.231 1.231 16 C -0.036 4.036 17 Cl -0.207 7.207 18 C -0.166 4.166 19 C -0.101 4.101 20 C 0.079 3.921 21 N -0.639 5.639 22 C 0.531 3.469 23 O -0.549 6.549 24 C -0.115 4.115 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.277 0.723 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.421 0.579 34 H 0.135 0.865 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 -10.608 5.097 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.057 4.057 3 C -0.160 4.160 4 C 0.072 3.928 5 O -0.233 6.233 6 C 0.125 3.875 7 H 0.075 0.925 8 C -0.571 4.571 9 H 0.064 0.936 10 C -0.163 4.163 11 N -0.555 5.555 12 Si 0.739 3.261 13 H -0.188 1.188 14 H -0.196 1.196 15 H -0.154 1.154 16 C -0.099 4.099 17 Cl -0.181 7.181 18 C -0.185 4.185 19 C -0.104 4.104 20 C -0.017 4.017 21 N -0.283 5.283 22 C 0.320 3.680 23 O -0.428 6.428 24 C -0.153 4.153 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.163 0.837 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.261 0.739 34 H 0.153 0.847 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.333 -11.116 5.055 15.997 hybrid contribution 0.544 -0.195 -0.216 0.617 sum -9.789 -11.312 4.839 15.722 Atomic orbital electron populations 1.20812 0.87993 1.04161 1.03667 1.19142 0.97390 0.88426 1.00699 1.20215 0.90380 0.98742 1.06613 1.19223 0.92608 0.85158 0.95794 1.86239 1.22182 1.27731 1.87153 1.20668 0.76772 0.98236 0.91829 0.92511 1.20789 1.06674 0.97318 1.32294 0.93567 1.25733 0.96856 1.00701 0.93030 1.69960 1.18915 1.32929 1.33716 0.86162 0.78839 0.80073 0.81069 1.18800 1.19578 1.15378 1.25620 1.01997 0.88643 0.93640 1.98670 1.90626 1.49131 1.79631 1.20362 1.00370 0.90666 1.07101 1.19524 0.93132 0.94242 1.03515 1.17783 0.92638 0.84654 1.06582 1.43430 1.10578 1.04217 1.70099 1.20613 0.87522 0.85834 0.74033 1.90778 1.86582 1.13293 1.52171 1.21127 0.96976 0.89655 1.07588 0.89662 0.90525 0.89774 0.83709 0.91322 0.88549 0.87887 0.85684 0.73949 0.84692 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.96 71.24 0.71 -0.96 16 2 C -0.05 -1.27 5.90 -19.68 -0.12 -1.38 16 3 C -0.14 -4.06 9.61 22.31 0.21 -3.85 16 4 C 0.12 4.18 5.94 22.53 0.13 4.32 16 5 O -0.32 -13.42 9.73 -93.29 -0.91 -14.32 16 6 C 0.18 7.75 1.80 29.85 0.05 7.80 16 7 H 0.06 2.38 2.38 -2.39 -0.01 2.38 16 8 C -0.53 -27.91 9.24 25.60 0.24 -27.68 16 9 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 10 C 0.04 2.04 5.47 84.65 0.46 2.51 16 11 N -0.92 -51.93 13.96 21.45 0.30 -51.63 16 12 Si 0.92 38.03 27.26 68.60 1.87 39.90 16 13 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 14 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 15 H -0.23 -8.53 6.44 99.48 0.64 -7.89 16 16 C -0.04 -1.34 6.32 71.98 0.45 -0.89 16 17 Cl -0.21 -6.85 25.66 -2.72 -0.07 -6.92 16 18 C -0.17 -5.44 7.06 22.28 0.16 -5.28 16 19 C -0.10 -2.80 6.34 -19.70 -0.12 -2.93 16 20 C 0.08 1.95 6.81 38.30 0.26 2.22 16 21 N -0.64 -13.69 5.81 -303.09 -1.76 -15.45 16 22 C 0.53 13.37 8.71 87.94 0.77 14.14 16 23 O -0.55 -17.12 18.03 -3.05 -0.05 -17.17 16 24 C -0.11 -2.64 6.87 29.46 0.20 -2.44 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 0.92 7.58 -2.38 -0.02 0.90 16 27 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 28 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 29 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 32 H 0.13 4.31 5.19 -2.91 -0.02 4.30 16 33 H 0.42 6.83 8.47 -92.70 -0.79 6.05 16 34 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.14 2.75 8.14 -2.38 -0.02 2.73 16 Total: -1.00 -62.58 307.97 3.08 -59.50 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.30 Total: 20.50 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 3.41 Total: -14.42 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -1.46 Total: -67.08 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.96 Total: -31.50 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.87 Total: 39.90 kcal Atomic # 17 Polarization: -6.85 SS G_CDS: -0.07 Total: -6.92 kcal Total: -62.58 3.08 -59.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225413887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.836 kcal (2) G-P(sol) polarization free energy of solvation -62.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds