Wall clock time and date at job start Tue Mar 31 2020 07:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37960 * 119.83893 * 2 1 4 4 C 1.39304 * 120.20096 * 180.02562 * 3 2 1 5 5 C 1.38925 * 119.04483 * 359.97438 * 4 3 2 6 6 C 1.37622 * 120.85905 * 0.02562 * 5 4 3 7 7 C 1.38694 * 119.84885 * 180.02562 * 2 1 3 8 8 O 1.35971 * 120.13916 * 359.95944 * 7 2 1 9 9 C 1.42904 * 116.99718 * 176.76797 * 8 7 2 10 10 H 1.08999 * 109.47286 * 26.68267 * 9 8 7 11 11 C 1.50699 * 109.46889 * 146.68027 * 9 8 7 12 12 H 1.07997 * 120.00280 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99711 * 180.02562 * 11 9 8 14 14 N 1.31516 * 120.00627 * 0.02562 * 13 11 9 15 15 Si 1.86812 * 119.99836 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46772 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47028 * 119.99934 * 15 13 11 18 18 H 1.48489 * 109.47056 * 240.00248 * 15 13 11 19 19 C 1.53000 * 109.47433 * 266.68272 * 9 8 7 20 20 Cl 1.80302 * 109.47125 * 64.99952 * 19 9 8 21 21 C 1.51146 * 106.35310 * 180.02562 * 5 4 3 22 22 C 1.51382 * 104.10673 * 359.97438 * 21 5 4 23 23 O 1.21291 * 126.43112 * 179.97438 * 22 21 5 24 24 N 1.34366 * 107.13468 * 359.75320 * 22 21 5 25 25 H 1.09000 * 109.46727 * 90.00273 * 1 2 3 26 26 H 1.09005 * 109.46718 * 209.99821 * 1 2 3 27 27 H 1.08992 * 109.47097 * 330.00127 * 1 2 3 28 28 H 1.08001 * 119.89365 * 0.02562 * 3 2 1 29 29 H 1.07991 * 120.06739 * 180.02562 * 6 5 4 30 30 H 0.96993 * 120.00416 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.47423 * 185.00234 * 19 9 8 32 32 H 1.08997 * 109.46695 * 305.00081 * 19 9 8 33 33 H 1.09002 * 110.50549 * 118.65890 * 21 5 4 34 34 H 1.09003 * 110.50065 * 241.34676 * 21 5 4 35 35 H 0.96999 * 123.89259 * 180.26315 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1935 1.1967 0.0000 4 6 3.5865 1.2055 -0.0005 5 6 4.2686 -0.0048 -0.0005 6 6 3.5861 -1.1998 -0.0005 7 6 2.1974 -1.2030 -0.0005 8 8 1.5173 -2.3804 -0.0002 9 6 2.2936 -3.5780 -0.0726 10 1 3.2833 -3.3952 0.3458 11 6 1.6100 -4.6679 0.7121 12 1 0.6759 -4.4664 1.2153 13 6 2.1770 -5.9224 0.7875 14 7 3.3148 -6.1678 0.1751 15 14 1.3300 -7.2733 1.7608 16 1 0.0738 -6.7449 2.3509 17 1 1.0129 -8.4092 0.8584 18 1 2.2295 -7.7396 2.8464 19 6 2.4295 -4.0102 -1.5340 20 17 3.3762 -2.7725 -2.4412 21 6 5.7410 0.3366 -0.0005 22 6 5.7689 1.8502 -0.0012 23 8 6.7578 2.5524 -0.0010 24 7 4.4923 2.2696 -0.0070 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6491 2.1295 0.0004 29 1 4.1293 -2.1331 -0.0001 30 1 3.7138 -7.0502 0.2285 31 1 2.9448 -4.9694 -1.5828 32 1 1.4387 -4.1070 -1.9778 33 1 6.2236 -0.0541 0.8954 34 1 6.2235 -0.0541 -0.8965 35 1 4.2298 3.2034 -0.0124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225516817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:59 Heat of formation + Delta-G solvation = -57.411637 kcal Electronic energy + Delta-G solvation = -21438.451161 eV Core-core repulsion = 18041.392569 eV Total energy + Delta-G solvation = -3397.058592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18554 -39.16847 -37.36691 -35.38436 -34.72993 -33.38446 -32.59592 -29.89548 -29.51269 -28.31824 -25.41408 -25.16544 -23.02325 -21.28979 -20.80843 -20.34642 -17.71770 -17.11921 -16.69535 -16.10356 -15.86776 -15.12279 -14.84763 -14.56230 -14.08944 -13.99478 -13.39362 -13.10811 -12.91969 -12.73109 -12.67036 -12.27894 -12.09107 -11.93493 -11.76689 -11.60618 -11.26036 -11.06849 -10.94597 -10.69464 -10.29166 -10.13225 -10.06746 -9.61451 -9.41785 -9.05618 -8.73131 -8.36220 -7.06455 -6.49680 -4.57388 1.54369 1.61441 2.63284 3.07346 3.16180 3.17536 3.22144 3.34088 3.96309 4.06731 4.26958 4.37890 4.61852 4.87182 5.10324 5.29962 5.42765 5.50412 5.56899 5.80198 5.87342 5.99472 6.05883 6.15958 6.20557 6.29770 6.33284 6.57203 6.66322 6.75143 6.92002 6.93534 7.08655 7.22237 7.48779 7.69558 8.07969 8.24826 8.60934 9.10982 10.57395 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.004810 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.501254 B = 5820.396140 C = 6197.820221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.104 4.104 3 C -0.101 4.101 4 C 0.077 3.923 5 C -0.105 4.105 6 C -0.140 4.140 7 C 0.148 3.852 8 O -0.303 6.303 9 C 0.204 3.796 10 H 0.051 0.949 11 C -0.521 4.521 12 H 0.077 0.923 13 C 0.064 3.936 14 N -0.888 5.888 15 Si 0.915 3.085 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.036 4.036 20 Cl -0.241 7.241 21 C -0.115 4.115 22 C 0.528 3.472 23 O -0.523 6.523 24 N -0.655 5.655 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.145 0.855 30 H 0.272 0.728 31 H 0.133 0.867 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 9.156 -0.915 9.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.122 4.122 4 C -0.018 4.018 5 C -0.108 4.108 6 C -0.159 4.159 7 C 0.100 3.900 8 O -0.216 6.216 9 C 0.150 3.850 10 H 0.069 0.931 11 C -0.559 4.559 12 H 0.095 0.905 13 C -0.139 4.139 14 N -0.525 5.525 15 Si 0.741 3.259 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.098 4.098 20 Cl -0.215 7.215 21 C -0.154 4.154 22 C 0.317 3.683 23 O -0.400 6.400 24 N -0.298 5.298 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.162 0.838 30 H 0.082 0.918 31 H 0.151 0.849 32 H 0.093 0.907 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.244 9.322 -1.006 9.459 hybrid contribution -0.202 -0.379 0.257 0.501 sum -1.446 8.944 -0.748 9.091 Atomic orbital electron populations 1.20552 0.90422 1.02575 1.02072 1.18861 0.96269 0.89694 1.05708 1.19834 0.89908 0.97487 1.04990 1.17859 0.90694 0.86687 1.06601 1.19405 0.93961 0.92428 1.04977 1.20587 0.93468 0.97858 1.03954 1.18715 0.89741 0.87143 0.94431 1.86156 1.36852 1.12381 1.86234 1.20554 0.93460 0.79909 0.91117 0.93121 1.21048 1.09448 0.93951 1.31448 0.90456 1.24975 0.94812 0.98668 0.95440 1.69794 1.17266 1.23288 1.42199 0.86142 0.79603 0.80593 0.79517 1.19254 1.20524 1.20495 1.25771 0.96563 0.94038 0.93464 1.98646 1.78682 1.63964 1.80198 1.21026 0.95271 0.93010 1.06072 1.20590 0.82026 0.91218 0.74507 1.90776 1.35015 1.63424 1.50769 1.43581 1.06436 1.08687 1.71141 0.91651 0.90595 0.92337 0.85888 0.83780 0.91804 0.84893 0.90689 0.86159 0.86166 0.75579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.78 36.01 0.35 -0.99 16 2 C -0.10 -1.64 5.88 -104.55 -0.62 -2.25 16 3 C -0.10 -1.40 9.71 -39.29 -0.38 -1.78 16 4 C 0.08 1.10 7.11 -83.60 -0.59 0.51 16 5 C -0.11 -1.65 6.34 -104.37 -0.66 -2.31 16 6 C -0.14 -2.49 7.06 -39.57 -0.28 -2.77 16 7 C 0.15 2.74 5.95 -39.18 -0.23 2.50 16 8 O -0.30 -6.38 8.77 -19.65 -0.17 -6.55 16 9 C 0.20 4.61 2.19 -27.88 -0.06 4.55 16 10 H 0.05 1.21 5.39 -51.93 -0.28 0.93 16 11 C -0.52 -12.79 8.89 -34.44 -0.31 -13.10 16 12 H 0.08 1.92 7.81 -52.49 -0.41 1.51 16 13 C 0.06 1.56 5.29 -17.82 -0.09 1.47 16 14 N -0.89 -22.09 11.30 55.43 0.63 -21.46 16 15 Si 0.91 19.09 29.54 -169.99 -5.02 14.07 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 19 C -0.04 -0.76 6.17 37.16 0.23 -0.54 16 20 Cl -0.24 -4.67 25.65 -51.86 -1.33 -6.00 16 21 C -0.11 -1.56 6.87 -28.48 -0.20 -1.76 16 22 C 0.53 7.71 8.71 -10.83 -0.09 7.61 16 23 O -0.52 -9.05 18.03 5.55 0.10 -8.95 16 24 N -0.65 -8.42 5.89 -9.66 -0.06 -8.47 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.08 1.13 7.52 -51.93 -0.39 0.74 16 27 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.14 2.77 5.14 -52.49 -0.27 2.50 16 30 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 31 H 0.13 3.08 5.96 -51.93 -0.31 2.77 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.41 4.18 8.96 -40.82 -0.37 3.81 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -26.56 308.25 -7.84 -34.40 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.69 Total: 7.17 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.94 Total: -8.86 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.57 Total: -29.94 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.07 Total: -15.49 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 17 Polarization: -4.67 SS G_CDS: -1.33 Total: -6.00 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.56 -7.84 -34.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225516817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.009 kcal (2) G-P(sol) polarization free energy of solvation -26.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds