Wall clock time and date at job start Tue Mar 31 2020 07:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37960 * 119.83893 * 2 1 4 4 C 1.39304 * 120.20096 * 180.02562 * 3 2 1 5 5 C 1.38925 * 119.04483 * 359.97438 * 4 3 2 6 6 C 1.37622 * 120.85905 * 0.02562 * 5 4 3 7 7 C 1.38694 * 119.84885 * 180.02562 * 2 1 3 8 8 O 1.35971 * 120.13916 * 359.95944 * 7 2 1 9 9 C 1.42904 * 116.99718 * 176.76797 * 8 7 2 10 10 H 1.08999 * 109.47286 * 26.68267 * 9 8 7 11 11 C 1.50699 * 109.46889 * 146.68027 * 9 8 7 12 12 H 1.07997 * 120.00280 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99711 * 180.02562 * 11 9 8 14 14 N 1.31516 * 120.00627 * 0.02562 * 13 11 9 15 15 Si 1.86812 * 119.99836 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46772 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47028 * 119.99934 * 15 13 11 18 18 H 1.48489 * 109.47056 * 240.00248 * 15 13 11 19 19 C 1.53000 * 109.47433 * 266.68272 * 9 8 7 20 20 Cl 1.80302 * 109.47125 * 64.99952 * 19 9 8 21 21 C 1.51146 * 106.35310 * 180.02562 * 5 4 3 22 22 C 1.51382 * 104.10673 * 359.97438 * 21 5 4 23 23 O 1.21291 * 126.43112 * 179.97438 * 22 21 5 24 24 N 1.34366 * 107.13468 * 359.75320 * 22 21 5 25 25 H 1.09000 * 109.46727 * 90.00273 * 1 2 3 26 26 H 1.09005 * 109.46718 * 209.99821 * 1 2 3 27 27 H 1.08992 * 109.47097 * 330.00127 * 1 2 3 28 28 H 1.08001 * 119.89365 * 0.02562 * 3 2 1 29 29 H 1.07991 * 120.06739 * 180.02562 * 6 5 4 30 30 H 0.96993 * 120.00416 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.47423 * 185.00234 * 19 9 8 32 32 H 1.08997 * 109.46695 * 305.00081 * 19 9 8 33 33 H 1.09002 * 110.50549 * 118.65890 * 21 5 4 34 34 H 1.09003 * 110.50065 * 241.34676 * 21 5 4 35 35 H 0.96999 * 123.89259 * 180.26315 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1935 1.1967 0.0000 4 6 3.5865 1.2055 -0.0005 5 6 4.2686 -0.0048 -0.0005 6 6 3.5861 -1.1998 -0.0005 7 6 2.1974 -1.2030 -0.0005 8 8 1.5173 -2.3804 -0.0002 9 6 2.2936 -3.5780 -0.0726 10 1 3.2833 -3.3952 0.3458 11 6 1.6100 -4.6679 0.7121 12 1 0.6759 -4.4664 1.2153 13 6 2.1770 -5.9224 0.7875 14 7 3.3148 -6.1678 0.1751 15 14 1.3300 -7.2733 1.7608 16 1 0.0738 -6.7449 2.3509 17 1 1.0129 -8.4092 0.8584 18 1 2.2295 -7.7396 2.8464 19 6 2.4295 -4.0102 -1.5340 20 17 3.3762 -2.7725 -2.4412 21 6 5.7410 0.3366 -0.0005 22 6 5.7689 1.8502 -0.0012 23 8 6.7578 2.5524 -0.0010 24 7 4.4923 2.2696 -0.0070 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6491 2.1295 0.0004 29 1 4.1293 -2.1331 -0.0001 30 1 3.7138 -7.0502 0.2285 31 1 2.9448 -4.9694 -1.5828 32 1 1.4387 -4.1070 -1.9778 33 1 6.2236 -0.0541 0.8954 34 1 6.2235 -0.0541 -0.8965 35 1 4.2298 3.2034 -0.0124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225516817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:59 Heat of formation + Delta-G solvation = -72.068870 kcal Electronic energy + Delta-G solvation = -21439.086746 eV Core-core repulsion = 18041.392569 eV Total energy + Delta-G solvation = -3397.694177 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.38430 -40.55420 -38.72578 -36.81903 -36.24403 -35.14419 -33.78773 -31.44570 -30.79330 -29.61438 -27.23804 -26.36193 -24.45437 -22.48834 -22.28358 -21.60605 -19.07861 -18.61022 -18.30550 -17.38885 -17.03505 -16.73342 -16.26460 -16.06137 -15.40560 -15.37037 -14.81424 -14.47596 -14.35040 -13.94801 -13.85661 -13.79138 -13.58008 -13.21464 -13.06850 -12.96289 -12.82174 -12.67589 -12.51125 -12.23860 -11.79363 -11.57755 -11.35627 -11.24605 -11.07889 -10.60615 -10.47284 -9.58560 -8.40657 -8.32169 -6.49019 0.29770 0.38614 1.40935 1.43937 1.46308 1.57843 1.64802 2.05295 2.30166 2.73821 2.84826 3.01512 3.14769 3.44450 3.89159 4.15145 4.26765 4.34382 4.43605 4.45188 4.48045 4.65780 4.71982 4.92939 4.94824 4.98017 5.13386 5.18659 5.30656 5.34711 5.52591 5.61006 5.70571 5.82529 5.89894 5.99803 6.52944 6.88709 6.98461 7.23945 8.72220 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.004810 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.501254 B = 5820.396140 C = 6197.820221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.106 4.106 3 C -0.088 4.088 4 C 0.085 3.915 5 C -0.115 4.115 6 C -0.151 4.151 7 C 0.113 3.887 8 O -0.317 6.317 9 C 0.212 3.788 10 H 0.033 0.967 11 C -0.543 4.543 12 H 0.067 0.933 13 C 0.028 3.972 14 N -0.909 5.909 15 Si 0.973 3.027 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.277 1.277 19 C -0.026 4.026 20 Cl -0.222 7.222 21 C -0.114 4.114 22 C 0.532 3.468 23 O -0.550 6.550 24 N -0.640 5.640 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.164 0.836 29 H 0.123 0.877 30 H 0.275 0.725 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 10.752 -0.824 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.011 4.011 5 C -0.118 4.118 6 C -0.170 4.170 7 C 0.066 3.934 8 O -0.231 6.231 9 C 0.156 3.844 10 H 0.050 0.950 11 C -0.581 4.581 12 H 0.086 0.914 13 C -0.173 4.173 14 N -0.547 5.547 15 Si 0.797 3.203 16 H -0.191 1.191 17 H -0.199 1.199 18 H -0.203 1.203 19 C -0.089 4.089 20 Cl -0.196 7.196 21 C -0.153 4.153 22 C 0.321 3.679 23 O -0.429 6.429 24 N -0.284 5.284 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.182 0.818 29 H 0.140 0.860 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -1.961 10.953 -0.921 11.165 hybrid contribution 0.052 -0.733 0.209 0.764 sum -1.908 10.220 -0.713 10.421 Atomic orbital electron populations 1.20587 0.88849 1.03197 1.02754 1.19221 0.97574 0.89223 1.04707 1.20180 0.89656 0.98255 1.02791 1.17969 0.91195 0.86510 1.05442 1.19518 0.95185 0.92295 1.04788 1.20401 0.93379 0.97806 1.05454 1.19069 0.90312 0.87091 0.96906 1.86094 1.36960 1.12765 1.87271 1.20248 0.92494 0.80404 0.91245 0.94953 1.21273 1.09414 0.95137 1.32280 0.91441 1.25662 0.95262 1.00319 0.96078 1.69881 1.18137 1.23796 1.42862 0.85260 0.78611 0.78123 0.78289 1.19131 1.19909 1.20266 1.25413 0.96477 0.93636 0.93383 1.98637 1.78228 1.63109 1.79611 1.21086 0.94325 0.92658 1.07205 1.20595 0.82073 0.91287 0.73980 1.90772 1.35925 1.63994 1.52207 1.43425 1.05587 1.09263 1.70102 0.90866 0.92604 0.89080 0.81845 0.85979 0.91591 0.86718 0.90653 0.84807 0.85255 0.73750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.42 9.78 71.24 0.70 -1.72 16 2 C -0.11 -3.15 5.88 -19.82 -0.12 -3.26 16 3 C -0.09 -2.13 9.71 22.46 0.22 -1.91 16 4 C 0.08 2.20 7.11 38.30 0.27 2.48 16 5 C -0.12 -3.48 6.34 -19.70 -0.12 -3.60 16 6 C -0.15 -5.45 7.06 22.28 0.16 -5.29 16 7 C 0.11 4.19 5.95 22.53 0.13 4.32 16 8 O -0.32 -13.68 8.77 -93.23 -0.82 -14.50 16 9 C 0.21 9.88 2.19 29.85 0.07 9.95 16 10 H 0.03 1.63 5.39 -2.39 -0.01 1.62 16 11 C -0.54 -27.44 8.89 25.60 0.23 -27.22 16 12 H 0.07 3.45 7.81 -2.91 -0.02 3.42 16 13 C 0.03 1.38 5.29 84.65 0.45 1.83 16 14 N -0.91 -46.09 11.30 21.45 0.24 -45.85 16 15 Si 0.97 39.32 29.54 68.60 2.03 41.34 16 16 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 17 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 18 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 19 C -0.03 -1.15 6.17 71.98 0.44 -0.70 16 20 Cl -0.22 -8.66 25.65 -2.72 -0.07 -8.73 16 21 C -0.11 -2.95 6.87 29.46 0.20 -2.75 16 22 C 0.53 14.44 8.71 87.94 0.77 15.21 16 23 O -0.55 -18.14 18.03 -3.06 -0.06 -18.20 16 24 N -0.64 -14.56 5.89 -303.09 -1.79 -16.35 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.62 7.52 -2.38 -0.02 1.60 16 27 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16 28 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.12 4.90 5.14 -2.91 -0.01 4.88 16 30 H 0.27 13.14 8.31 -92.71 -0.77 12.36 16 31 H 0.11 5.49 5.96 -2.39 -0.01 5.48 16 32 H 0.07 3.23 8.14 -2.39 -0.02 3.22 16 33 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.42 7.17 8.96 -92.71 -0.83 6.34 16 Total: -1.00 -57.47 308.25 3.25 -54.22 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.32 Total: 20.73 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 3.39 Total: -12.68 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -1.54 Total: -62.20 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.87 Total: -32.69 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 17 Polarization: -8.66 SS G_CDS: -0.07 Total: -8.73 kcal Total: -57.47 3.25 -54.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225516817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.845 kcal (2) G-P(sol) polarization free energy of solvation -57.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds