Wall clock time and date at job start Tue Mar 31 2020 06:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47240 * 270.00339 * 3 2 1 5 5 H 1.48502 * 109.46860 * 30.00199 * 3 2 1 6 6 H 1.48500 * 109.47279 * 150.00120 * 3 2 1 7 7 C 1.37882 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99811 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47139 * 300.00828 * 9 7 2 11 11 C 1.53003 * 109.46863 * 60.00332 * 9 7 2 12 12 Cl 1.80306 * 109.47087 * 184.99900 * 11 9 7 13 13 O 1.42903 * 109.47159 * 180.02562 * 9 7 2 14 14 C 1.35896 * 116.99689 * 147.02130 * 13 9 7 15 15 C 1.38806 * 120.01995 * 356.50425 * 14 13 9 16 16 C 1.38175 * 120.09002 * 180.02562 * 15 14 13 17 17 C 1.38132 * 120.10546 * 359.97438 * 16 15 14 18 18 C 1.38750 * 120.09833 * 0.26366 * 17 16 15 19 19 C 1.38599 * 120.01157 * 176.52796 * 14 13 9 20 20 N 1.39828 * 120.05145 * 180.26209 * 18 17 16 21 21 C 1.34554 * 120.45950 * 17.97411 * 20 18 17 22 22 O 1.21293 * 119.61786 * 181.12415 * 21 20 18 23 23 C 1.50496 * 120.76477 * 1.10392 * 21 20 18 24 24 C 1.50675 * 120.12643 * 180.02562 * 17 16 15 25 25 H 0.96994 * 120.00368 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47327 * 304.99635 * 11 9 7 27 27 H 1.08997 * 109.47417 * 65.00003 * 11 9 7 28 28 H 1.07999 * 119.95463 * 0.02562 * 15 14 13 29 29 H 1.08001 * 119.94773 * 180.02562 * 16 15 14 30 30 H 1.07997 * 120.07067 * 359.97044 * 19 14 13 31 31 H 0.96996 * 119.76551 * 198.25428 * 20 18 17 32 32 H 1.09001 * 109.39997 * 84.91293 * 23 21 20 33 33 H 1.09005 * 109.39798 * 204.64707 * 23 21 20 34 34 H 1.09003 * 109.46450 * 26.04122 * 24 17 16 35 35 H 1.09003 * 109.45458 * 266.07148 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8896 11 6 0.3712 -2.5799 -1.2495 12 17 -0.6393 -4.0715 -1.1773 13 8 2.1799 -3.5853 -0.0005 14 6 1.8088 -4.7143 0.6586 15 6 0.6076 -4.7497 1.3533 16 6 0.2290 -5.8967 2.0244 17 6 1.0445 -7.0115 2.0056 18 6 2.2488 -6.9812 1.3172 19 6 2.6298 -5.8307 0.6378 20 7 3.0709 -8.1120 1.2942 21 6 2.5748 -9.3224 1.6092 22 8 3.3064 -10.2899 1.6042 23 6 1.1229 -9.4897 1.9683 24 6 0.6319 -8.2627 2.7367 25 1 -0.4850 0.8400 0.0004 26 1 -0.2764 -1.7043 -1.2950 27 1 1.0025 -2.6114 -2.1375 28 1 -0.0320 -3.8796 1.3693 29 1 -0.7062 -5.9219 2.5639 30 1 3.5646 -5.8050 0.0978 31 1 4.0062 -8.0226 1.0534 32 1 0.5356 -9.6049 1.0573 33 1 1.0035 -10.3776 2.5892 34 1 -0.4547 -8.2951 2.8166 35 1 1.0694 -8.2608 3.7351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226864038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:37 Heat of formation + Delta-G solvation = -70.118568 kcal Electronic energy + Delta-G solvation = -21198.899592 eV Core-core repulsion = 17801.289986 eV Total energy + Delta-G solvation = -3397.609606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83596 -39.20767 -37.50586 -35.01129 -34.54497 -33.85579 -33.27521 -30.19958 -29.12939 -28.47585 -25.41641 -24.30911 -23.10634 -22.41465 -21.18350 -18.84855 -17.97433 -17.37770 -16.81295 -16.05002 -15.91568 -15.25348 -15.06315 -14.58862 -14.30228 -14.05576 -13.47978 -13.47458 -13.21062 -12.99073 -12.66725 -12.49888 -12.07618 -11.90384 -11.55279 -11.23602 -11.14159 -11.07001 -10.86436 -10.71464 -10.38401 -10.29800 -10.05147 -9.64811 -9.43200 -9.13922 -8.74581 -8.10152 -7.34318 -6.50694 -4.58512 1.47251 1.76404 2.61481 3.04589 3.08098 3.16823 3.20352 3.33323 3.95201 4.11272 4.25378 4.52631 4.73034 4.84647 4.86146 5.06809 5.20256 5.44321 5.59101 5.68068 5.68960 5.81931 5.89156 6.07369 6.12558 6.19333 6.38009 6.52970 6.69832 6.85030 6.86871 6.95548 7.10356 7.33513 7.47730 7.68148 7.98075 8.22580 8.58999 9.09703 10.56410 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.004051 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.423795 B = 6910.418403 C = 7336.503803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.077 0.923 9 C 0.205 3.795 10 H 0.054 0.946 11 C -0.037 4.037 12 Cl -0.239 7.239 13 O -0.308 6.308 14 C 0.188 3.812 15 C -0.206 4.206 16 C -0.049 4.049 17 C -0.180 4.180 18 C 0.183 3.817 19 C -0.200 4.200 20 N -0.659 5.659 21 C 0.523 3.477 22 O -0.542 6.542 23 C -0.138 4.138 24 C -0.066 4.066 25 H 0.273 0.727 26 H 0.134 0.866 27 H 0.074 0.926 28 H 0.142 0.858 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.409 0.591 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -9.997 3.088 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.561 4.561 8 H 0.095 0.905 9 C 0.151 3.849 10 H 0.072 0.928 11 C -0.099 4.099 12 Cl -0.214 7.214 13 O -0.221 6.221 14 C 0.139 3.861 15 C -0.225 4.225 16 C -0.068 4.068 17 C -0.183 4.183 18 C 0.088 3.912 19 C -0.221 4.221 20 N -0.303 5.303 21 C 0.312 3.688 22 O -0.419 6.419 23 C -0.177 4.177 24 C -0.103 4.103 25 H 0.083 0.917 26 H 0.152 0.848 27 H 0.093 0.907 28 H 0.159 0.841 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.246 0.754 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.962 -10.528 3.029 10.998 hybrid contribution 0.497 1.099 -0.257 1.233 sum -0.465 -9.429 2.772 9.839 Atomic orbital electron populations 1.69782 1.05999 1.28186 1.48566 1.24971 0.95185 0.99844 0.93852 0.86174 0.79700 0.81283 0.78576 1.20127 1.20721 1.19369 1.21015 0.94387 0.87859 1.52846 0.90520 1.20586 0.87431 0.82788 0.94140 0.92847 1.25774 0.95456 0.86761 1.01929 1.98645 1.75778 1.47953 1.98988 1.86140 1.46408 1.21385 1.68121 1.18765 0.91464 0.86849 0.89000 1.21508 0.98251 1.00470 1.02273 1.20509 0.98116 0.91292 0.96833 1.19121 0.96131 0.97301 1.05728 1.17112 0.91068 0.86273 0.96721 1.19831 1.03074 0.91713 1.07528 1.43545 1.13389 1.06328 1.66992 1.20750 0.91113 0.81758 0.75141 1.90751 1.60830 1.38123 1.52189 1.21676 0.92066 1.00709 1.03282 1.20260 1.01845 0.90118 0.98087 0.91729 0.84807 0.90710 0.84076 0.85817 0.85322 0.75355 0.88007 0.87812 0.89622 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.16 11.29 55.43 0.63 -21.53 16 2 C 0.06 1.59 5.29 -17.82 -0.09 1.49 16 3 Si 0.92 19.21 29.54 -169.99 -5.02 14.19 16 4 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.52 -13.05 8.89 -34.44 -0.31 -13.35 16 8 H 0.08 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.21 4.71 2.19 -27.88 -0.06 4.64 16 10 H 0.05 1.28 5.39 -51.93 -0.28 1.00 16 11 C -0.04 -0.79 6.17 37.16 0.23 -0.56 16 12 Cl -0.24 -4.65 25.60 -51.86 -1.33 -5.98 16 13 O -0.31 -6.70 9.73 -19.41 -0.19 -6.89 16 14 C 0.19 3.54 5.96 -39.24 -0.23 3.31 16 15 C -0.21 -3.63 7.04 -39.39 -0.28 -3.90 16 16 C -0.05 -0.71 9.68 -39.64 -0.38 -1.09 16 17 C -0.18 -2.45 5.65 -104.48 -0.59 -3.04 16 18 C 0.18 2.66 6.50 -83.76 -0.54 2.12 16 19 C -0.20 -3.28 9.87 -39.19 -0.39 -3.67 16 20 N -0.66 -8.62 5.36 -10.02 -0.05 -8.68 16 21 C 0.52 7.04 7.72 -11.18 -0.09 6.95 16 22 O -0.54 -8.89 17.91 5.55 0.10 -8.79 16 23 C -0.14 -1.41 6.08 -28.05 -0.17 -1.58 16 24 C -0.07 -0.67 5.99 -27.96 -0.17 -0.84 16 25 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 26 H 0.13 3.12 5.95 -51.93 -0.31 2.81 16 27 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.14 2.69 5.10 -52.49 -0.27 2.43 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.41 4.79 8.83 -40.82 -0.36 4.42 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -26.92 305.93 -8.05 -34.96 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -3.72 Total: 7.62 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.07 Total: -9.52 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.57 Total: -30.21 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.09 Total: -15.68 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 17 Polarization: -4.65 SS G_CDS: -1.33 Total: -5.98 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.92 -8.05 -34.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226864038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.156 kcal (2) G-P(sol) polarization free energy of solvation -26.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds