Wall clock time and date at job start Tue Mar 31 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47240 * 270.00339 * 3 2 1 5 5 H 1.48502 * 109.46860 * 30.00199 * 3 2 1 6 6 H 1.48500 * 109.47279 * 150.00120 * 3 2 1 7 7 C 1.37882 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99811 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47139 * 300.00828 * 9 7 2 11 11 C 1.53003 * 109.46863 * 60.00332 * 9 7 2 12 12 Cl 1.80306 * 109.47087 * 184.99900 * 11 9 7 13 13 O 1.42903 * 109.47159 * 180.02562 * 9 7 2 14 14 C 1.35896 * 116.99689 * 147.02130 * 13 9 7 15 15 C 1.38806 * 120.01995 * 356.50425 * 14 13 9 16 16 C 1.38175 * 120.09002 * 180.02562 * 15 14 13 17 17 C 1.38132 * 120.10546 * 359.97438 * 16 15 14 18 18 C 1.38750 * 120.09833 * 0.26366 * 17 16 15 19 19 C 1.38599 * 120.01157 * 176.52796 * 14 13 9 20 20 N 1.39828 * 120.05145 * 180.26209 * 18 17 16 21 21 C 1.34554 * 120.45950 * 17.97411 * 20 18 17 22 22 O 1.21293 * 119.61786 * 181.12415 * 21 20 18 23 23 C 1.50496 * 120.76477 * 1.10392 * 21 20 18 24 24 C 1.50675 * 120.12643 * 180.02562 * 17 16 15 25 25 H 0.96994 * 120.00368 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47327 * 304.99635 * 11 9 7 27 27 H 1.08997 * 109.47417 * 65.00003 * 11 9 7 28 28 H 1.07999 * 119.95463 * 0.02562 * 15 14 13 29 29 H 1.08001 * 119.94773 * 180.02562 * 16 15 14 30 30 H 1.07997 * 120.07067 * 359.97044 * 19 14 13 31 31 H 0.96996 * 119.76551 * 198.25428 * 20 18 17 32 32 H 1.09001 * 109.39997 * 84.91293 * 23 21 20 33 33 H 1.09005 * 109.39798 * 204.64707 * 23 21 20 34 34 H 1.09003 * 109.46450 * 26.04122 * 24 17 16 35 35 H 1.09003 * 109.45458 * 266.07148 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8896 11 6 0.3712 -2.5799 -1.2495 12 17 -0.6393 -4.0715 -1.1773 13 8 2.1799 -3.5853 -0.0005 14 6 1.8088 -4.7143 0.6586 15 6 0.6076 -4.7497 1.3533 16 6 0.2290 -5.8967 2.0244 17 6 1.0445 -7.0115 2.0056 18 6 2.2488 -6.9812 1.3172 19 6 2.6298 -5.8307 0.6378 20 7 3.0709 -8.1120 1.2942 21 6 2.5748 -9.3224 1.6092 22 8 3.3064 -10.2899 1.6042 23 6 1.1229 -9.4897 1.9683 24 6 0.6319 -8.2627 2.7367 25 1 -0.4850 0.8400 0.0004 26 1 -0.2764 -1.7043 -1.2950 27 1 1.0025 -2.6114 -2.1375 28 1 -0.0320 -3.8796 1.3693 29 1 -0.7062 -5.9219 2.5639 30 1 3.5646 -5.8050 0.0978 31 1 4.0062 -8.0226 1.0534 32 1 0.5356 -9.6049 1.0573 33 1 1.0035 -10.3776 2.5892 34 1 -0.4547 -8.2951 2.8166 35 1 1.0694 -8.2608 3.7351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226864038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:36 Heat of formation + Delta-G solvation = -85.282870 kcal Electronic energy + Delta-G solvation = -21199.557165 eV Core-core repulsion = 17801.289986 eV Total energy + Delta-G solvation = -3398.267179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.96459 -40.57766 -38.83705 -36.62041 -35.86611 -35.29523 -34.56801 -31.72292 -30.50255 -29.71778 -27.26636 -25.35190 -24.42299 -23.58940 -22.69281 -20.03546 -19.28676 -18.94109 -18.12079 -17.41436 -17.12308 -16.65960 -16.36373 -16.13480 -15.79360 -15.15776 -14.91517 -14.70078 -14.52770 -14.18623 -13.93671 -13.81631 -13.67774 -13.20648 -13.01538 -12.85816 -12.64573 -12.36585 -12.32991 -11.94344 -11.90742 -11.70200 -11.33801 -11.12900 -11.08987 -10.70221 -10.52748 -9.35710 -8.65165 -8.36457 -6.51765 0.25841 0.52441 1.40899 1.44618 1.52009 1.54903 1.62842 1.95996 2.30366 2.74039 2.89488 2.99091 3.45956 3.82224 3.87976 4.06254 4.24267 4.31402 4.36639 4.43214 4.44711 4.54451 4.68770 4.89401 4.96238 4.97863 5.10572 5.16286 5.25958 5.51097 5.52858 5.61960 5.66576 5.80462 5.87352 6.20762 6.48958 6.84247 6.93087 7.20976 8.69867 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.004051 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.423795 B = 6910.418403 C = 7336.503803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.030 3.970 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.213 3.787 10 H 0.038 0.962 11 C -0.028 4.028 12 Cl -0.218 7.218 13 O -0.329 6.329 14 C 0.153 3.847 15 C -0.219 4.219 16 C -0.044 4.044 17 C -0.168 4.168 18 C 0.185 3.815 19 C -0.205 4.205 20 N -0.656 5.656 21 C 0.520 3.480 22 O -0.574 6.574 23 C -0.133 4.133 24 C -0.063 4.063 25 H 0.276 0.724 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.155 0.845 30 H 0.133 0.867 31 H 0.412 0.588 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -11.398 4.011 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.172 4.172 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.083 0.917 9 C 0.157 3.843 10 H 0.056 0.944 11 C -0.091 4.091 12 Cl -0.192 7.192 13 O -0.243 6.243 14 C 0.106 3.894 15 C -0.239 4.239 16 C -0.063 4.063 17 C -0.170 4.170 18 C 0.090 3.910 19 C -0.226 4.226 20 N -0.299 5.299 21 C 0.311 3.689 22 O -0.454 6.454 23 C -0.172 4.172 24 C -0.100 4.100 25 H 0.086 0.914 26 H 0.135 0.865 27 H 0.091 0.909 28 H 0.139 0.861 29 H 0.172 0.828 30 H 0.151 0.849 31 H 0.250 0.750 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.798 -11.946 3.953 12.711 hybrid contribution 0.748 1.367 -0.493 1.634 sum -1.050 -10.580 3.461 11.181 Atomic orbital electron populations 1.69861 1.06937 1.28987 1.48621 1.25654 0.95914 1.02413 0.93190 0.85293 0.78440 0.77750 0.78712 1.19510 1.20079 1.19510 1.21244 0.94117 0.89494 1.53874 0.91731 1.20294 0.87324 0.82812 0.93830 0.94407 1.25407 0.95215 0.87123 1.01315 1.98633 1.75065 1.46506 1.98994 1.86064 1.46525 1.22176 1.69511 1.19030 0.93011 0.86673 0.90697 1.21434 0.97805 1.01105 1.03519 1.20822 0.99248 0.90239 0.95944 1.19569 0.94913 0.98382 1.04180 1.17162 0.91612 0.85935 0.96322 1.19939 1.03051 0.91766 1.07869 1.43580 1.13597 1.06092 1.66637 1.21418 0.92373 0.80990 0.74143 1.90744 1.62018 1.38957 1.53653 1.21766 0.89448 1.01676 1.04327 1.20386 1.03867 0.87809 0.97901 0.91443 0.86452 0.90917 0.86106 0.82755 0.84935 0.74950 0.86764 0.85515 0.86557 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.93 11.29 21.45 0.24 -45.68 16 2 C 0.03 1.48 5.29 84.66 0.45 1.93 16 3 Si 0.97 39.59 29.54 68.60 2.03 41.62 16 4 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.55 -28.33 8.89 25.60 0.23 -28.10 16 8 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 9 C 0.21 10.13 2.19 29.85 0.07 10.19 16 10 H 0.04 1.91 5.39 -2.38 -0.01 1.90 16 11 C -0.03 -1.23 6.17 71.98 0.44 -0.79 16 12 Cl -0.22 -8.47 25.60 -2.72 -0.07 -8.54 16 13 O -0.33 -14.88 9.73 -92.38 -0.90 -15.78 16 14 C 0.15 5.87 5.96 22.49 0.13 6.00 16 15 C -0.22 -7.71 7.04 22.39 0.16 -7.55 16 16 C -0.04 -1.18 9.68 22.23 0.22 -0.96 16 17 C -0.17 -4.05 5.65 -19.77 -0.11 -4.17 16 18 C 0.19 5.08 6.50 38.15 0.25 5.32 16 19 C -0.20 -6.69 9.87 22.52 0.22 -6.47 16 20 N -0.66 -16.06 5.36 -304.11 -1.63 -17.69 16 21 C 0.52 12.73 7.72 87.63 0.68 13.41 16 22 O -0.57 -17.89 17.91 -3.07 -0.06 -17.95 16 23 C -0.13 -2.19 6.08 29.74 0.18 -2.01 16 24 C -0.06 -0.99 5.99 29.80 0.18 -0.81 16 25 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 26 H 0.12 5.63 5.95 -2.39 -0.01 5.62 16 27 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.12 4.74 5.10 -2.91 -0.01 4.72 16 29 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 31 H 0.41 9.28 8.83 -92.71 -0.82 8.46 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.12 1.25 8.06 -2.39 -0.02 1.23 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -58.95 305.93 3.03 -55.93 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.32 Total: 22.11 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 3.09 Total: -14.01 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -1.39 Total: -63.38 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.95 Total: -33.73 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Atomic # 17 Polarization: -8.47 SS G_CDS: -0.07 Total: -8.54 kcal Total: -58.95 3.03 -55.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226864038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.356 kcal (2) G-P(sol) polarization free energy of solvation -58.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds