Wall clock time and date at job start Tue Mar 31 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48498 * 109.47097 * 240.00062 * 3 2 1 5 5 H 1.48495 * 109.47079 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47209 * 120.00179 * 3 2 1 7 7 C 1.37876 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99937 * 176.98587 * 7 2 1 9 9 C 1.50696 * 120.00118 * 356.98370 * 7 2 1 10 10 H 1.08997 * 109.47581 * 32.72917 * 9 7 2 11 11 C 1.52999 * 109.47459 * 152.73286 * 9 7 2 12 12 Cl 1.80292 * 109.47398 * 185.72073 * 11 9 7 13 13 O 1.42908 * 109.47031 * 272.72858 * 9 7 2 14 14 C 1.35917 * 116.99837 * 141.34934 * 13 9 7 15 15 C 1.38852 * 119.97186 * 5.38897 * 14 13 9 16 16 C 1.38327 * 120.38549 * 179.79011 * 15 14 13 17 17 C 1.37816 * 120.01955 * 0.49506 * 16 15 14 18 18 C 1.39720 * 119.92421 * 359.74142 * 17 16 15 19 19 C 1.38591 * 119.96987 * 185.66578 * 14 13 9 20 20 C 1.47911 * 118.78434 * 180.02562 * 18 17 16 21 21 O 1.21557 * 120.44988 * 197.70506 * 20 18 17 22 22 N 1.34818 * 119.09736 * 17.67429 * 20 18 17 23 23 C 1.46042 * 121.16488 * 2.71965 * 22 20 18 24 24 C 1.50559 * 120.89252 * 179.66386 * 17 16 15 25 25 H 0.97005 * 120.00431 * 186.40348 * 1 2 3 26 26 H 1.09001 * 109.46784 * 305.72386 * 11 9 7 27 27 H 1.09000 * 109.47408 * 65.71853 * 11 9 7 28 28 H 1.08008 * 119.80578 * 0.03239 * 15 14 13 29 29 H 1.08004 * 119.98682 * 180.24445 * 16 15 14 30 30 H 1.08001 * 120.24151 * 359.97438 * 19 14 13 31 31 H 0.96999 * 119.41341 * 182.73608 * 22 20 18 32 32 H 1.09004 * 109.16019 * 82.67198 * 23 22 20 33 33 H 1.09000 * 109.16024 * 201.91987 * 23 22 20 34 34 H 1.08995 * 109.39051 * 25.89580 * 24 17 16 35 35 H 1.08998 * 109.32245 * 266.12162 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0833 -1.1947 -0.0497 9 6 1.2525 -2.4982 0.0676 10 1 0.2977 -2.3946 -0.4479 11 6 2.0775 -3.5983 -0.6034 12 17 1.1099 -5.1180 -0.6719 13 8 1.0207 -2.8436 1.4348 14 6 -0.1812 -3.4030 1.7346 15 6 -1.0729 -3.7175 0.7178 16 6 -2.2966 -4.2910 1.0129 17 6 -2.6414 -4.5443 2.3229 18 6 -1.7514 -4.2260 3.3519 19 6 -0.5180 -3.6536 3.0554 20 6 -2.1470 -4.5091 4.7487 21 8 -1.5690 -3.9723 5.6736 22 7 -3.1578 -5.3702 4.9822 23 6 -3.8245 -6.0681 3.8861 24 6 -3.9712 -5.1609 2.6670 25 1 -0.4851 -0.8348 0.0937 26 1 2.3408 -3.2892 -1.6149 27 1 2.9870 -3.7723 -0.0284 28 1 -0.8079 -3.5168 -0.3099 29 1 -2.9837 -4.5367 0.2166 30 1 0.1717 -3.4064 3.8489 31 1 -3.4474 -5.5288 5.8942 32 1 -3.2381 -6.9448 3.6110 33 1 -4.8135 -6.3877 4.2145 34 1 -4.3281 -5.7471 1.8202 35 1 -4.6886 -4.3708 2.8885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227955363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:33 Heat of formation + Delta-G solvation = -69.513522 kcal Electronic energy + Delta-G solvation = -21507.216525 eV Core-core repulsion = 18109.633156 eV Total energy + Delta-G solvation = -3397.583369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43395 -38.88723 -37.04661 -35.71298 -35.19934 -33.42027 -31.46225 -30.65434 -30.01130 -28.08668 -24.88987 -24.02828 -23.61152 -21.62909 -21.30913 -19.08122 -17.72096 -17.39591 -17.14802 -15.99186 -15.70145 -14.97129 -14.80312 -14.43964 -14.08828 -13.90386 -13.69306 -13.50570 -13.31520 -13.01654 -12.84312 -12.46192 -12.23310 -11.87968 -11.77680 -11.19175 -10.99875 -10.89551 -10.72881 -10.41865 -10.26332 -9.91876 -9.74523 -9.43310 -9.16425 -9.07349 -8.70303 -8.55159 -7.34433 -6.79458 -4.64473 1.24134 1.87906 2.85931 3.09310 3.24632 3.27684 3.32827 3.49401 4.08997 4.26059 4.32597 4.65639 4.77307 4.82224 5.10403 5.17441 5.25505 5.36725 5.52512 5.61636 5.68542 5.72130 5.81304 5.91496 5.97951 6.15309 6.39204 6.44332 6.60650 6.79888 6.83034 6.92773 7.15556 7.26571 7.51178 7.97169 8.30410 8.35724 8.49632 9.15277 10.57151 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.005209 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.038659 B = 5373.827706 C = 6230.130048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.036 3.964 3 Si 1.076 2.924 4 H -0.282 1.282 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.598 4.598 8 H 0.065 0.935 9 C 0.173 3.827 10 H 0.058 0.942 11 C -0.028 4.028 12 Cl -0.219 7.219 13 O -0.312 6.312 14 C 0.151 3.849 15 C -0.171 4.171 16 C -0.086 4.086 17 C -0.116 4.116 18 C -0.108 4.108 19 C -0.106 4.106 20 C 0.570 3.430 21 O -0.537 6.537 22 N -0.730 5.730 23 C 0.117 3.883 24 C -0.090 4.090 25 H 0.274 0.726 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.401 0.599 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 -10.941 1.351 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.173 4.173 3 Si 0.902 3.098 4 H -0.208 1.208 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.634 4.634 8 H 0.084 0.916 9 C 0.119 3.881 10 H 0.076 0.924 11 C -0.091 4.091 12 Cl -0.193 7.193 13 O -0.225 6.225 14 C 0.103 3.897 15 C -0.190 4.190 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.125 4.125 20 C 0.359 3.641 21 O -0.415 6.415 22 N -0.383 5.383 23 C -0.008 4.008 24 C -0.128 4.128 25 H 0.086 0.914 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.153 0.847 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.236 0.764 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.751 -9.074 1.640 11.428 hybrid contribution -0.065 -1.932 0.174 1.941 sum -6.817 -11.006 1.814 13.072 Atomic orbital electron populations 1.70811 1.07033 1.31688 1.41343 1.26193 0.96281 1.03344 0.91498 0.83443 0.75007 0.74295 0.77093 1.20847 1.20279 1.20716 1.21894 0.95244 0.89651 1.56636 0.91648 1.20800 0.96911 0.91723 0.78637 0.92407 1.25273 0.96804 0.83104 1.03913 1.98671 1.76909 1.44513 1.99219 1.86667 1.29543 1.72392 1.33918 1.19148 0.87217 0.90800 0.92553 1.21609 0.94851 1.02403 1.00092 1.20559 0.96012 0.98773 0.95030 1.19563 0.95952 1.03193 0.92974 1.19226 0.95782 1.04126 0.91969 1.20363 0.96301 1.00924 0.94936 1.18364 0.78750 0.77975 0.89042 1.90794 1.53673 1.50971 1.46015 1.45682 1.36432 1.45926 1.10306 1.21273 0.97513 0.94786 0.87214 1.20653 0.95107 0.99158 0.97851 0.91426 0.88236 0.89308 0.84683 0.86001 0.84784 0.76354 0.91705 0.89824 0.89192 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 13.61 55.43 0.75 -23.90 16 2 C 0.04 0.96 5.46 -17.82 -0.10 0.87 16 3 Si 1.08 23.30 29.90 -169.99 -5.08 18.22 16 4 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.60 -15.41 8.69 -34.44 -0.30 -15.71 16 8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.17 4.02 1.89 -27.89 -0.05 3.97 16 10 H 0.06 1.40 3.94 -51.93 -0.20 1.20 16 11 C -0.03 -0.55 6.31 37.16 0.23 -0.31 16 12 Cl -0.22 -3.94 25.76 -51.86 -1.34 -5.28 16 13 O -0.31 -7.54 9.69 -19.48 -0.19 -7.73 16 14 C 0.15 3.28 6.23 -39.22 -0.24 3.03 16 15 C -0.17 -3.32 7.24 -39.32 -0.28 -3.60 16 16 C -0.09 -1.39 9.72 -39.70 -0.39 -1.77 16 17 C -0.12 -1.79 5.68 -104.29 -0.59 -2.39 16 18 C -0.11 -1.96 5.78 -105.04 -0.61 -2.57 16 19 C -0.11 -2.20 9.58 -39.11 -0.37 -2.57 16 20 C 0.57 9.80 7.79 -12.28 -0.10 9.70 16 21 O -0.54 -11.07 17.46 5.32 0.09 -10.98 16 22 N -0.73 -8.85 5.58 -61.70 -0.34 -9.19 16 23 C 0.12 1.06 7.03 -4.46 -0.03 1.03 16 24 C -0.09 -0.95 6.04 -28.12 -0.17 -1.12 16 25 H 0.27 7.69 6.66 -40.82 -0.27 7.42 16 26 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 27 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 28 H 0.14 2.68 4.80 -52.48 -0.25 2.43 16 29 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.13 2.87 7.84 -52.49 -0.41 2.46 16 31 H 0.40 3.98 8.92 -40.82 -0.36 3.61 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 307.57 15.07 4.64 4.64 Total: -1.00 -31.00 307.57 -8.14 -39.13 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.67 Total: 6.55 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.00 Total: -11.46 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.41 Total: -33.09 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.10 Total: -18.71 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.08 Total: 18.22 kcal Atomic # 17 Polarization: -3.94 SS G_CDS: -1.34 Total: -5.28 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.00 -8.14 -39.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227955363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.381 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds