Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00060 * 2 1 4 4 H 1.48498 * 109.47097 * 240.00062 * 3 2 1 5 5 H 1.48495 * 109.47079 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47209 * 120.00179 * 3 2 1 7 7 C 1.37876 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99937 * 176.98587 * 7 2 1 9 9 C 1.50696 * 120.00118 * 356.98370 * 7 2 1 10 10 H 1.08997 * 109.47581 * 32.72917 * 9 7 2 11 11 C 1.52999 * 109.47459 * 152.73286 * 9 7 2 12 12 Cl 1.80292 * 109.47398 * 185.72073 * 11 9 7 13 13 O 1.42908 * 109.47031 * 272.72858 * 9 7 2 14 14 C 1.35917 * 116.99837 * 141.34934 * 13 9 7 15 15 C 1.38852 * 119.97186 * 5.38897 * 14 13 9 16 16 C 1.38327 * 120.38549 * 179.79011 * 15 14 13 17 17 C 1.37816 * 120.01955 * 0.49506 * 16 15 14 18 18 C 1.39720 * 119.92421 * 359.74142 * 17 16 15 19 19 C 1.38591 * 119.96987 * 185.66578 * 14 13 9 20 20 C 1.47911 * 118.78434 * 180.02562 * 18 17 16 21 21 O 1.21557 * 120.44988 * 197.70506 * 20 18 17 22 22 N 1.34818 * 119.09736 * 17.67429 * 20 18 17 23 23 C 1.46042 * 121.16488 * 2.71965 * 22 20 18 24 24 C 1.50559 * 120.89252 * 179.66386 * 17 16 15 25 25 H 0.97005 * 120.00431 * 186.40348 * 1 2 3 26 26 H 1.09001 * 109.46784 * 305.72386 * 11 9 7 27 27 H 1.09000 * 109.47408 * 65.71853 * 11 9 7 28 28 H 1.08008 * 119.80578 * 0.03239 * 15 14 13 29 29 H 1.08004 * 119.98682 * 180.24445 * 16 15 14 30 30 H 1.08001 * 120.24151 * 359.97438 * 19 14 13 31 31 H 0.96999 * 119.41341 * 182.73608 * 22 20 18 32 32 H 1.09004 * 109.16019 * 82.67198 * 23 22 20 33 33 H 1.09000 * 109.16024 * 201.91987 * 23 22 20 34 34 H 1.08995 * 109.39051 * 25.89580 * 24 17 16 35 35 H 1.08998 * 109.32245 * 266.12162 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0833 -1.1947 -0.0497 9 6 1.2525 -2.4982 0.0676 10 1 0.2977 -2.3946 -0.4479 11 6 2.0775 -3.5983 -0.6034 12 17 1.1099 -5.1180 -0.6719 13 8 1.0207 -2.8436 1.4348 14 6 -0.1812 -3.4030 1.7346 15 6 -1.0729 -3.7175 0.7178 16 6 -2.2966 -4.2910 1.0129 17 6 -2.6414 -4.5443 2.3229 18 6 -1.7514 -4.2260 3.3519 19 6 -0.5180 -3.6536 3.0554 20 6 -2.1470 -4.5091 4.7487 21 8 -1.5690 -3.9723 5.6736 22 7 -3.1578 -5.3702 4.9822 23 6 -3.8245 -6.0681 3.8861 24 6 -3.9712 -5.1609 2.6670 25 1 -0.4851 -0.8348 0.0937 26 1 2.3408 -3.2892 -1.6149 27 1 2.9870 -3.7723 -0.0284 28 1 -0.8079 -3.5168 -0.3099 29 1 -2.9837 -4.5367 0.2166 30 1 0.1717 -3.4064 3.8489 31 1 -3.4474 -5.5288 5.8942 32 1 -3.2381 -6.9448 3.6110 33 1 -4.8135 -6.3877 4.2145 34 1 -4.3281 -5.7471 1.8202 35 1 -4.6886 -4.3708 2.8885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227955363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -90.304332 kcal Electronic energy + Delta-G solvation = -21508.118082 eV Core-core repulsion = 18109.633156 eV Total energy + Delta-G solvation = -3398.484926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.76788 -40.44023 -38.49871 -37.01107 -36.65054 -35.29546 -32.82614 -32.02641 -31.63883 -29.34740 -26.79496 -25.45000 -24.77423 -23.25398 -22.64967 -20.49055 -19.20635 -19.16825 -18.34820 -17.33435 -16.95284 -16.52680 -16.28824 -16.05327 -15.62173 -15.41410 -15.22378 -14.85570 -14.67182 -14.25206 -14.08783 -13.97949 -13.77059 -13.35048 -13.10467 -12.73276 -12.42212 -12.34545 -12.15788 -11.98600 -11.94881 -11.41712 -11.16996 -11.05468 -10.89090 -10.63155 -10.20076 -9.96799 -8.87985 -8.85882 -6.70975 -0.19881 0.44494 1.29538 1.51874 1.59517 1.72335 1.79184 2.14708 2.41007 2.61022 2.81572 3.22683 3.53875 3.75816 3.77390 3.94440 4.01244 4.08791 4.18790 4.26523 4.39647 4.46411 4.55020 4.70493 4.79961 4.89527 4.93325 5.08998 5.19963 5.38410 5.41808 5.62867 5.72129 5.92824 5.93348 6.08375 6.29973 6.79447 7.10862 7.17028 8.51209 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.005209 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.038659 B = 5373.827706 C = 6230.130048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.010 4.010 3 Si 1.118 2.882 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.615 4.615 8 H 0.067 0.933 9 C 0.172 3.828 10 H 0.045 0.955 11 C -0.022 4.022 12 Cl -0.202 7.202 13 O -0.340 6.340 14 C 0.118 3.882 15 C -0.176 4.176 16 C -0.083 4.083 17 C -0.096 4.096 18 C -0.121 4.121 19 C -0.133 4.133 20 C 0.564 3.436 21 O -0.586 6.586 22 N -0.709 5.709 23 C 0.109 3.891 24 C -0.091 4.091 25 H 0.262 0.738 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.163 0.837 30 H 0.109 0.891 31 H 0.414 0.586 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 -12.863 0.769 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.213 4.213 3 Si 0.938 3.062 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.651 4.651 8 H 0.085 0.915 9 C 0.119 3.881 10 H 0.063 0.937 11 C -0.085 4.085 12 Cl -0.176 7.176 13 O -0.255 6.255 14 C 0.072 3.928 15 C -0.195 4.195 16 C -0.100 4.100 17 C -0.097 4.097 18 C -0.124 4.124 19 C -0.152 4.152 20 C 0.352 3.648 21 O -0.468 6.468 22 N -0.361 5.361 23 C -0.013 4.013 24 C -0.128 4.128 25 H 0.073 0.927 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.145 0.855 29 H 0.181 0.819 30 H 0.127 0.873 31 H 0.252 0.748 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.096 -11.064 1.047 14.361 hybrid contribution 0.510 -1.520 0.398 1.652 sum -8.586 -12.584 1.445 15.302 Atomic orbital electron populations 1.70914 1.08013 1.31042 1.44304 1.27526 0.96351 1.06766 0.90630 0.82931 0.74266 0.70654 0.78346 1.18042 1.20797 1.20086 1.22276 0.95605 0.91094 1.56142 0.91499 1.20703 0.96562 0.92385 0.78459 0.93718 1.25031 0.96194 0.82994 1.04279 1.98663 1.76653 1.43058 1.99193 1.86505 1.31280 1.73870 1.33871 1.19303 0.87141 0.92878 0.93484 1.21668 0.95934 1.02854 0.99017 1.21041 0.95134 0.97169 0.96681 1.20196 0.97341 1.00390 0.91755 1.19500 0.95296 1.03889 0.93736 1.20338 0.97730 1.03059 0.94118 1.18352 0.79685 0.78756 0.88011 1.90766 1.55734 1.53330 1.46933 1.45647 1.34347 1.43848 1.12280 1.21673 0.99906 0.94071 0.85697 1.20890 0.91807 1.00077 1.00023 0.92686 0.86757 0.89000 0.85489 0.81905 0.87272 0.74798 0.90734 0.84820 0.85309 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.94 13.61 21.45 0.29 -52.65 16 2 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 3 Si 1.12 47.55 29.90 68.60 2.05 49.60 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.61 -32.63 8.69 25.60 0.22 -32.41 16 8 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.17 8.34 1.89 29.85 0.06 8.40 16 10 H 0.05 2.27 3.94 -2.39 -0.01 2.26 16 11 C -0.02 -0.88 6.31 71.98 0.45 -0.42 16 12 Cl -0.20 -7.18 25.76 -2.72 -0.07 -7.25 16 13 O -0.34 -17.41 9.69 -92.62 -0.90 -18.30 16 14 C 0.12 5.39 6.23 22.50 0.14 5.53 16 15 C -0.18 -6.88 7.24 22.44 0.16 -6.72 16 16 C -0.08 -2.49 9.72 22.19 0.22 -2.27 16 17 C -0.10 -2.71 5.68 -19.65 -0.11 -2.82 16 18 C -0.12 -4.39 5.78 -20.13 -0.12 -4.51 16 19 C -0.13 -5.85 9.58 22.58 0.22 -5.64 16 20 C 0.56 19.14 7.79 86.80 0.68 19.82 16 21 O -0.59 -24.97 17.46 -3.90 -0.07 -25.04 16 22 N -0.71 -15.04 5.58 -467.37 -2.61 -17.65 16 23 C 0.11 1.39 7.03 86.36 0.61 2.00 16 24 C -0.09 -1.43 6.04 29.69 0.18 -1.25 16 25 H 0.26 15.45 6.66 -92.70 -0.62 14.83 16 26 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 27 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 28 H 0.13 5.13 4.80 -2.91 -0.01 5.12 16 29 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 30 H 0.11 5.18 7.84 -2.91 -0.02 5.15 16 31 H 0.41 6.94 8.92 -92.71 -0.83 6.11 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.13 0.55 8.14 -2.39 -0.02 0.54 16 34 H 0.13 1.18 8.07 -2.39 -0.02 1.16 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.13 307.57 2.33 -70.80 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.47 Total: 20.86 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 3.16 Total: -20.37 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -2.32 Total: -70.30 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.97 Total: -43.34 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.05 Total: 49.60 kcal Atomic # 17 Polarization: -7.18 SS G_CDS: -0.07 Total: -7.25 kcal Total: -73.13 2.33 -70.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227955363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.503 kcal (2) G-P(sol) polarization free energy of solvation -73.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds