Wall clock time and date at job start Tue Mar 31 2020 07:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48501 * 109.47097 * 264.80434 * 3 2 1 5 5 H 1.48506 * 109.46945 * 24.80144 * 3 2 1 6 6 H 1.48496 * 109.47545 * 144.80208 * 3 2 1 7 7 C 1.37877 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00342 * 4.83804 * 7 2 1 9 9 C 1.50699 * 119.99704 * 184.83191 * 7 2 1 10 10 H 1.09001 * 109.47739 * 334.99454 * 9 7 2 11 11 C 1.53007 * 109.47206 * 94.99191 * 9 7 2 12 12 Cl 1.80303 * 109.47297 * 185.71004 * 11 9 7 13 13 O 1.42897 * 109.47112 * 214.99349 * 9 7 2 14 14 C 1.35460 * 116.99899 * 150.00334 * 13 9 7 15 15 C 1.39225 * 119.37564 * 179.97438 * 14 13 9 16 16 C 1.36948 * 119.12104 * 180.10309 * 15 14 13 17 17 C 1.40357 * 118.33157 * 359.97438 * 16 15 14 18 18 C 1.39578 * 119.72442 * 359.82782 * 17 16 15 19 19 N 1.32170 * 119.61749 * 0.26902 * 18 17 16 20 20 C 1.50513 * 121.39836 * 180.32898 * 18 17 16 21 21 C 1.52618 * 111.25045 * 337.25853 * 20 18 17 22 22 C 1.53436 * 109.41709 * 54.65231 * 21 20 18 23 23 C 1.47176 * 119.90752 * 179.54398 * 17 16 15 24 24 O 1.21295 * 121.18111 * 348.92183 * 23 17 16 25 25 H 0.96999 * 119.99635 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47037 * 305.71423 * 11 9 7 27 27 H 1.09005 * 109.46351 * 65.71391 * 11 9 7 28 28 H 1.08005 * 120.44407 * 0.12588 * 15 14 13 29 29 H 1.07997 * 120.83788 * 179.97438 * 16 15 14 30 30 H 1.08996 * 109.12666 * 216.79721 * 20 18 17 31 31 H 1.09000 * 109.12082 * 97.70776 * 20 18 17 32 32 H 1.08995 * 109.48214 * 174.64525 * 21 20 18 33 33 H 1.08995 * 109.47472 * 294.66818 * 21 20 18 34 34 H 1.08998 * 109.87893 * 55.54275 * 22 21 20 35 35 H 1.09007 * 109.87808 * 176.61698 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3960 2.6819 0.5873 6 1 3.4875 1.4744 0.8070 7 6 2.0045 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0779 9 6 3.5075 -1.1964 0.1105 10 1 3.9002 -0.2483 -0.2571 11 6 3.9115 -1.3824 1.5744 12 17 5.7003 -1.2178 1.7299 13 8 4.0406 -2.2676 -0.6707 14 6 5.2734 -2.0869 -1.2021 15 6 5.8406 -3.0993 -1.9714 16 6 7.0881 -2.9119 -2.5044 17 6 7.7455 -1.6980 -2.2505 18 6 7.1197 -0.7213 -1.4741 19 7 5.9154 -0.9515 -0.9808 20 6 7.7869 0.5964 -1.1844 21 6 9.3029 0.4918 -1.3260 22 6 9.6487 -0.0576 -2.7163 23 6 9.0914 -1.4639 -2.7978 24 8 9.7319 -2.3650 -3.2970 25 1 -0.4849 0.8401 -0.0004 26 1 3.4223 -0.6240 2.1855 27 1 3.6071 -2.3731 1.9122 28 1 5.3037 -4.0201 -2.1459 29 1 7.5544 -3.6788 -3.1049 30 1 7.5436 0.9039 -0.1674 31 1 7.4141 1.3464 -1.8820 32 1 9.7483 1.4791 -1.2042 33 1 9.6937 -0.1801 -0.5620 34 1 9.1933 0.5664 -3.4852 35 1 10.7305 -0.0792 -2.8478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228749401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:28 Heat of formation + Delta-G solvation = -60.247690 kcal Electronic energy + Delta-G solvation = -21660.944391 eV Core-core repulsion = 18263.762819 eV Total energy + Delta-G solvation = -3397.181572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77312 -39.10995 -37.49567 -35.54554 -35.00853 -33.26547 -32.42657 -30.82800 -29.41800 -28.44371 -25.40225 -24.02878 -23.41166 -21.73336 -20.80948 -19.50269 -17.82381 -17.23890 -16.63889 -16.46108 -15.54002 -15.03811 -14.75364 -14.48148 -14.22838 -14.09307 -13.70356 -13.40038 -13.17997 -13.01616 -12.83377 -12.69752 -12.37674 -11.89482 -11.83852 -11.49670 -11.21522 -11.19066 -11.09856 -10.70546 -10.11296 -9.99836 -9.79106 -9.66376 -9.60213 -9.22490 -9.04428 -8.88664 -8.00230 -6.49599 -4.58449 0.82446 1.48781 2.52642 3.00068 3.12877 3.16656 3.21609 3.67114 4.00696 4.06511 4.07817 4.26883 4.61179 4.79233 4.85921 4.95912 4.97775 5.26844 5.32114 5.39741 5.46621 5.60945 5.71696 5.80749 5.84377 5.89965 5.95883 5.98841 6.05823 6.20565 6.35932 6.63750 6.69923 7.10631 7.53442 7.72720 8.15994 8.24939 8.61411 9.06961 10.60378 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.005433 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.445673 B = 5152.281770 C = 5362.843742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.088 3.912 3 Si 0.866 3.134 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.528 4.528 8 H 0.089 0.911 9 C 0.179 3.821 10 H 0.070 0.930 11 C -0.033 4.033 12 Cl -0.221 7.221 13 O -0.286 6.286 14 C 0.379 3.621 15 C -0.219 4.219 16 C 0.011 3.989 17 C -0.290 4.290 18 C 0.230 3.770 19 N -0.531 5.531 20 C -0.080 4.080 21 C -0.110 4.110 22 C -0.165 4.165 23 C 0.413 3.587 24 O -0.471 6.471 25 H 0.274 0.726 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.980 1.765 -2.048 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.119 4.119 3 Si 0.691 3.309 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.565 4.565 8 H 0.107 0.893 9 C 0.124 3.876 10 H 0.087 0.913 11 C -0.096 4.096 12 Cl -0.195 7.195 13 O -0.190 6.190 14 C 0.199 3.801 15 C -0.240 4.240 16 C -0.013 4.013 17 C -0.294 4.294 18 C 0.090 3.910 19 N -0.255 5.255 20 C -0.118 4.118 21 C -0.148 4.148 22 C -0.202 4.202 23 C 0.292 3.708 24 O -0.348 6.348 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.161 0.839 29 H 0.160 0.840 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.584 1.810 -1.764 14.802 hybrid contribution 0.521 0.392 -0.277 0.708 sum 15.105 2.201 -2.041 15.401 Atomic orbital electron populations 1.69843 1.06260 1.28120 1.46186 1.24953 0.94893 0.99019 0.93019 0.86980 0.80727 0.83145 0.80056 1.19243 1.20554 1.17686 1.20697 0.86532 0.95978 1.53260 0.89328 1.20846 0.94441 0.87318 0.84987 0.91264 1.25774 0.77344 1.04506 1.02024 1.98662 1.23694 1.98756 1.98424 1.86482 1.24847 1.45410 1.62284 1.20325 0.85643 0.88178 0.85942 1.20843 0.97422 1.01189 1.04565 1.21174 0.92280 0.94827 0.93016 1.20743 0.99547 0.98239 1.10850 1.21128 0.88506 0.93642 0.87687 1.67498 1.10300 1.22258 1.25474 1.20433 0.93889 0.92904 1.04535 1.21490 0.95108 1.02274 0.95918 1.22326 1.02750 0.95613 0.99530 1.22380 0.85049 0.89898 0.73473 1.90505 1.60616 1.47248 1.36433 0.91564 0.88454 0.89351 0.83921 0.84039 0.88618 0.88938 0.89795 0.91133 0.88035 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.29 13.96 55.43 0.77 -23.52 16 2 C 0.09 2.33 5.47 -17.82 -0.10 2.23 16 3 Si 0.87 19.64 26.99 -169.99 -4.59 15.05 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.25 -5.50 6.82 56.52 0.39 -5.11 16 7 C -0.53 -13.84 9.23 -34.44 -0.32 -14.16 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.18 4.08 1.91 -27.88 -0.05 4.03 16 10 H 0.07 1.62 4.12 -51.93 -0.21 1.41 16 11 C -0.03 -0.68 6.31 37.16 0.23 -0.44 16 12 Cl -0.22 -4.14 25.93 -51.86 -1.34 -5.49 16 13 O -0.29 -6.28 9.72 -18.07 -0.18 -6.45 16 14 C 0.38 7.34 6.67 -16.99 -0.11 7.23 16 15 C -0.22 -3.59 9.99 -39.68 -0.40 -3.98 16 16 C 0.01 0.17 9.66 -39.25 -0.38 -0.21 16 17 C -0.29 -4.32 5.82 -104.97 -0.61 -4.93 16 18 C 0.23 3.56 6.69 -82.04 -0.55 3.01 16 19 N -0.53 -9.88 6.18 -9.17 -0.06 -9.93 16 20 C -0.08 -0.94 5.91 -28.17 -0.17 -1.11 16 21 C -0.11 -0.99 5.89 -26.70 -0.16 -1.15 16 22 C -0.16 -1.56 6.19 -27.27 -0.17 -1.73 16 23 C 0.41 5.56 6.88 -30.29 -0.21 5.35 16 24 O -0.47 -7.51 17.30 5.54 0.10 -7.41 16 25 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 27 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 28 H 0.14 2.06 8.06 -52.48 -0.42 1.64 16 29 H 0.14 1.84 7.77 -52.49 -0.41 1.44 16 30 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -29.35 309.18 -7.62 -36.97 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.00 Total: 1.99 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.98 Total: -5.86 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.72 Total: -33.45 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.08 Total: -13.87 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.59 Total: 15.05 kcal Atomic # 17 Polarization: -4.14 SS G_CDS: -1.34 Total: -5.49 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.35 -7.62 -36.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228749401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.277 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds