Wall clock time and date at job start Tue Mar 31 2020 07:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48501 * 109.47097 * 264.80434 * 3 2 1 5 5 H 1.48506 * 109.46945 * 24.80144 * 3 2 1 6 6 H 1.48496 * 109.47545 * 144.80208 * 3 2 1 7 7 C 1.37877 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00342 * 4.83804 * 7 2 1 9 9 C 1.50699 * 119.99704 * 184.83191 * 7 2 1 10 10 H 1.09001 * 109.47739 * 334.99454 * 9 7 2 11 11 C 1.53007 * 109.47206 * 94.99191 * 9 7 2 12 12 Cl 1.80303 * 109.47297 * 185.71004 * 11 9 7 13 13 O 1.42897 * 109.47112 * 214.99349 * 9 7 2 14 14 C 1.35460 * 116.99899 * 150.00334 * 13 9 7 15 15 C 1.39225 * 119.37564 * 179.97438 * 14 13 9 16 16 C 1.36948 * 119.12104 * 180.10309 * 15 14 13 17 17 C 1.40357 * 118.33157 * 359.97438 * 16 15 14 18 18 C 1.39578 * 119.72442 * 359.82782 * 17 16 15 19 19 N 1.32170 * 119.61749 * 0.26902 * 18 17 16 20 20 C 1.50513 * 121.39836 * 180.32898 * 18 17 16 21 21 C 1.52618 * 111.25045 * 337.25853 * 20 18 17 22 22 C 1.53436 * 109.41709 * 54.65231 * 21 20 18 23 23 C 1.47176 * 119.90752 * 179.54398 * 17 16 15 24 24 O 1.21295 * 121.18111 * 348.92183 * 23 17 16 25 25 H 0.96999 * 119.99635 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47037 * 305.71423 * 11 9 7 27 27 H 1.09005 * 109.46351 * 65.71391 * 11 9 7 28 28 H 1.08005 * 120.44407 * 0.12588 * 15 14 13 29 29 H 1.07997 * 120.83788 * 179.97438 * 16 15 14 30 30 H 1.08996 * 109.12666 * 216.79721 * 20 18 17 31 31 H 1.09000 * 109.12082 * 97.70776 * 20 18 17 32 32 H 1.08995 * 109.48214 * 174.64525 * 21 20 18 33 33 H 1.08995 * 109.47472 * 294.66818 * 21 20 18 34 34 H 1.08998 * 109.87893 * 55.54275 * 22 21 20 35 35 H 1.09007 * 109.87808 * 176.61698 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3960 2.6819 0.5873 6 1 3.4875 1.4744 0.8070 7 6 2.0045 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0779 9 6 3.5075 -1.1964 0.1105 10 1 3.9002 -0.2483 -0.2571 11 6 3.9115 -1.3824 1.5744 12 17 5.7003 -1.2178 1.7299 13 8 4.0406 -2.2676 -0.6707 14 6 5.2734 -2.0869 -1.2021 15 6 5.8406 -3.0993 -1.9714 16 6 7.0881 -2.9119 -2.5044 17 6 7.7455 -1.6980 -2.2505 18 6 7.1197 -0.7213 -1.4741 19 7 5.9154 -0.9515 -0.9808 20 6 7.7869 0.5964 -1.1844 21 6 9.3029 0.4918 -1.3260 22 6 9.6487 -0.0576 -2.7163 23 6 9.0914 -1.4639 -2.7978 24 8 9.7319 -2.3650 -3.2970 25 1 -0.4849 0.8401 -0.0004 26 1 3.4223 -0.6240 2.1855 27 1 3.6071 -2.3731 1.9122 28 1 5.3037 -4.0201 -2.1459 29 1 7.5544 -3.6788 -3.1049 30 1 7.5436 0.9039 -0.1674 31 1 7.4141 1.3464 -1.8820 32 1 9.7483 1.4791 -1.2042 33 1 9.6937 -0.1801 -0.5620 34 1 9.1933 0.5664 -3.4852 35 1 10.7305 -0.0792 -2.8478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228749401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:27 Heat of formation + Delta-G solvation = -77.988230 kcal Electronic energy + Delta-G solvation = -21661.713679 eV Core-core repulsion = 18263.762819 eV Total energy + Delta-G solvation = -3397.950860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.01094 -40.40613 -38.88238 -36.78037 -36.35400 -35.17501 -33.66964 -32.51062 -30.69011 -29.41829 -27.27832 -25.32057 -24.51886 -22.93099 -22.32077 -20.59651 -19.49727 -18.89866 -17.95565 -17.56665 -17.03937 -16.52485 -15.93745 -15.76095 -15.42956 -15.25520 -14.98247 -14.91727 -14.74199 -14.34206 -14.29922 -13.79058 -13.75884 -13.40020 -13.13754 -12.89215 -12.78858 -12.43701 -11.99542 -11.94322 -11.91617 -11.57672 -11.30722 -11.26821 -10.93387 -10.73237 -10.65883 -10.30990 -9.37073 -8.51851 -6.66442 -0.40057 0.25327 1.26694 1.32276 1.38940 1.43324 1.45756 2.18076 2.19306 2.74968 2.88192 3.04745 3.16462 3.63340 3.88625 3.98774 4.03179 4.08345 4.16397 4.21102 4.25260 4.44188 4.46294 4.64892 4.76380 4.79698 4.89509 4.96283 5.01478 5.07241 5.19767 5.24848 5.27106 5.47014 5.88970 6.44369 6.47927 6.54985 6.88061 7.04241 8.62508 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.005433 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.445673 B = 5152.281770 C = 5362.843742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.042 3.958 3 Si 0.927 3.073 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.046 0.954 9 C 0.189 3.811 10 H 0.066 0.934 11 C -0.031 4.031 12 Cl -0.200 7.200 13 O -0.309 6.309 14 C 0.349 3.651 15 C -0.223 4.223 16 C 0.012 3.988 17 C -0.291 4.291 18 C 0.222 3.778 19 N -0.551 5.551 20 C -0.082 4.082 21 C -0.101 4.101 22 C -0.156 4.156 23 C 0.413 3.587 24 O -0.498 6.498 25 H 0.278 0.722 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.123 0.877 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.228 3.669 -2.366 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.161 4.161 3 Si 0.748 3.252 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.159 1.159 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.133 3.867 10 H 0.084 0.916 11 C -0.094 4.094 12 Cl -0.174 7.174 13 O -0.215 6.215 14 C 0.170 3.830 15 C -0.243 4.243 16 C -0.012 4.012 17 C -0.294 4.294 18 C 0.083 3.917 19 N -0.275 5.275 20 C -0.119 4.119 21 C -0.139 4.139 22 C -0.193 4.193 23 C 0.294 3.706 24 O -0.376 6.376 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.109 0.891 28 H 0.172 0.828 29 H 0.178 0.822 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.865 3.711 -2.080 18.364 hybrid contribution -0.359 -0.322 -0.261 0.548 sum 17.505 3.389 -2.340 17.983 Atomic orbital electron populations 1.69959 1.07985 1.29293 1.48000 1.25722 0.95533 1.02458 0.92416 0.86027 0.80091 0.78764 0.80301 1.19085 1.19595 1.15908 1.20805 0.88755 0.94556 1.53509 0.93574 1.20538 0.92187 0.87586 0.86341 0.91583 1.25440 0.78689 1.04912 1.00388 1.98656 1.21711 1.98732 1.98328 1.86381 1.26849 1.45043 1.63254 1.20545 0.85196 0.89724 0.87530 1.20990 0.98041 1.01122 1.04181 1.21454 0.91646 0.95527 0.92571 1.21147 1.00440 0.97849 1.09979 1.21788 0.87584 0.95242 0.87081 1.67461 1.11620 1.22080 1.26367 1.20620 0.95599 0.91055 1.04618 1.21500 0.92957 1.04117 0.95295 1.22374 1.03845 0.92614 1.00453 1.22886 0.83986 0.91557 0.72153 1.90506 1.60972 1.48637 1.37532 0.91201 0.88027 0.89066 0.82823 0.82221 0.89170 0.87160 0.86213 0.91793 0.85862 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.81 13.96 21.45 0.30 -52.51 16 2 C 0.04 2.24 5.47 84.65 0.46 2.70 16 3 Si 0.93 40.34 26.99 68.60 1.85 42.19 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.24 -9.54 6.82 99.48 0.68 -8.86 16 7 C -0.54 -29.40 9.23 25.60 0.24 -29.16 16 8 H 0.05 2.82 8.06 -2.92 -0.02 2.80 16 9 C 0.19 8.72 1.91 29.85 0.06 8.78 16 10 H 0.07 3.06 4.12 -2.39 -0.01 3.05 16 11 C -0.03 -1.25 6.31 71.98 0.45 -0.80 16 12 Cl -0.20 -7.23 25.93 -2.72 -0.07 -7.30 16 13 O -0.31 -13.93 9.72 -87.58 -0.85 -14.79 16 14 C 0.35 13.51 6.67 84.86 0.57 14.07 16 15 C -0.22 -7.21 9.99 22.20 0.22 -6.99 16 16 C 0.01 0.36 9.66 22.48 0.22 0.57 16 17 C -0.29 -8.04 5.82 -20.09 -0.12 -8.16 16 18 C 0.22 6.39 6.69 42.77 0.29 6.67 16 19 N -0.55 -19.87 6.18 -295.88 -1.83 -21.70 16 20 C -0.08 -1.63 5.91 29.66 0.18 -1.46 16 21 C -0.10 -1.36 5.89 30.61 0.18 -1.18 16 22 C -0.16 -2.25 6.19 30.24 0.19 -2.06 16 23 C 0.41 9.91 6.88 28.29 0.19 10.10 16 24 O -0.50 -14.70 17.30 -3.08 -0.05 -14.75 16 25 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 27 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 28 H 0.15 4.46 8.06 -2.91 -0.02 4.43 16 29 H 0.16 3.90 7.77 -2.91 -0.02 3.88 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -65.66 309.18 3.56 -62.10 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 1.09 Total: 13.67 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 3.12 Total: -6.92 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -1.53 Total: -74.21 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.90 Total: -29.53 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.85 Total: 42.19 kcal Atomic # 17 Polarization: -7.23 SS G_CDS: -0.07 Total: -7.30 kcal Total: -65.66 3.56 -62.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228749401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.885 kcal (2) G-P(sol) polarization free energy of solvation -65.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds