Wall clock time and date at job start Tue Mar 31 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99864 * 2 1 4 4 H 1.48500 * 109.47067 * 264.75412 * 3 2 1 5 5 H 1.48502 * 109.47124 * 24.75668 * 3 2 1 6 6 H 1.48500 * 109.46789 * 144.75641 * 3 2 1 7 7 C 1.37874 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99918 * 4.83040 * 7 2 1 9 9 C 1.50696 * 119.99911 * 184.83656 * 7 2 1 10 10 H 1.09006 * 109.47241 * 334.98512 * 9 7 2 11 11 C 1.53005 * 109.47320 * 94.98195 * 9 7 2 12 12 Cl 1.80304 * 109.47413 * 184.63724 * 11 9 7 13 13 O 1.42899 * 109.47497 * 214.98155 * 9 7 2 14 14 C 1.35899 * 117.00301 * 141.65028 * 13 9 7 15 15 C 1.38755 * 120.11860 * 4.75261 * 14 13 9 16 16 C 1.37936 * 119.76296 * 180.02562 * 15 14 13 17 17 C 1.38715 * 120.41643 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.96688 * 359.96350 * 17 16 15 19 19 C 1.38504 * 120.12274 * 184.48094 * 14 13 9 20 20 C 1.50279 * 121.65302 * 180.15783 * 18 17 16 21 21 N 1.45266 * 112.00363 * 338.42646 * 20 18 17 22 22 C 1.33442 * 123.56138 * 22.02436 * 21 20 18 23 23 O 1.21280 * 118.58084 * 179.42239 * 22 21 20 24 24 C 1.49764 * 122.84345 * 359.41051 * 22 21 20 25 25 H 0.97003 * 120.00234 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46853 * 304.63935 * 11 9 7 27 27 H 1.09003 * 109.47141 * 64.63684 * 11 9 7 28 28 H 1.07999 * 120.11965 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.79322 * 179.97438 * 16 15 14 30 30 H 1.08009 * 119.82971 * 0.02562 * 19 14 13 31 31 H 1.09003 * 108.97440 * 99.07963 * 20 18 17 32 32 H 1.09001 * 108.97143 * 217.77762 * 20 18 17 33 33 H 0.97008 * 118.22257 * 202.00087 * 21 20 18 34 34 H 1.08993 * 109.15206 * 218.57528 * 24 22 21 35 35 H 1.09008 * 109.13616 * 99.43424 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6075 1.9825 -1.3942 5 1 1.3955 2.6822 0.5863 6 1 3.4869 1.4747 0.8079 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1276 -0.0797 9 6 3.5075 -1.1964 0.1095 10 1 3.9002 -0.2480 -0.2573 11 6 3.9114 -1.3836 1.5733 12 17 5.7032 -1.2504 1.7242 13 8 4.0407 -2.2671 -0.6724 14 6 5.1945 -2.0228 -1.3477 15 6 5.8546 -0.8135 -1.1836 16 6 7.0248 -0.5731 -1.8731 17 6 7.5457 -1.5327 -2.7286 18 6 6.8929 -2.7359 -2.8929 19 6 5.7186 -2.9823 -2.1979 20 6 7.4250 -3.8034 -3.8071 21 7 8.3282 -3.2623 -4.8079 22 6 8.9742 -2.1030 -4.6689 23 8 9.7159 -1.7418 -5.5579 24 6 8.8228 -1.2284 -3.4626 25 1 -0.4851 0.8401 0.0004 26 1 3.4373 -0.6139 2.1823 27 1 3.5901 -2.3672 1.9160 28 1 5.4532 -0.0627 -0.5190 29 1 7.5389 0.3683 -1.7460 30 1 5.2078 -3.9257 -2.3235 31 1 7.9581 -4.5456 -3.2128 32 1 6.5885 -4.2887 -4.3099 33 1 8.4697 -3.7716 -5.6214 34 1 8.8148 -0.1846 -3.7765 35 1 9.6676 -1.3930 -2.7936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229637128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:31 Heat of formation + Delta-G solvation = -64.129824 kcal Electronic energy + Delta-G solvation = -21251.894817 eV Core-core repulsion = 17854.544902 eV Total energy + Delta-G solvation = -3397.349914 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.67010 -39.34619 -37.52511 -35.38080 -35.10705 -33.41624 -32.21680 -31.01047 -30.51888 -27.63120 -25.56056 -25.42226 -22.99708 -21.97022 -21.04044 -18.74975 -18.15811 -17.31352 -16.89529 -16.56371 -16.00380 -15.18999 -15.07730 -14.71932 -14.05859 -13.99403 -13.80189 -13.61812 -13.33448 -13.11098 -13.01580 -12.86729 -12.77576 -12.04361 -11.81122 -11.57586 -11.28781 -11.17199 -10.74731 -10.70747 -10.18332 -10.05078 -9.88789 -9.64053 -9.43657 -9.31013 -8.98610 -8.55298 -7.56594 -6.54628 -4.62837 1.48708 1.67470 2.52512 2.85790 3.01914 3.05916 3.10615 3.16270 3.89908 3.96599 3.99339 4.50440 4.57484 4.78136 4.87380 4.99675 5.15983 5.28985 5.42197 5.46109 5.49661 5.66276 5.74200 5.79705 5.88749 6.04804 6.20420 6.41026 6.44301 6.55398 6.71714 6.76722 7.00243 7.09236 7.13818 7.81584 8.06952 8.26021 8.58706 9.01671 10.55852 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.004554 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.646974 B = 6146.510766 C = 6369.940391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.088 3.912 3 Si 0.860 3.140 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.091 0.909 9 C 0.175 3.825 10 H 0.051 0.949 11 C -0.037 4.037 12 Cl -0.229 7.229 13 O -0.300 6.300 14 C 0.163 3.837 15 C -0.192 4.192 16 C -0.073 4.073 17 C -0.139 4.139 18 C -0.067 4.067 19 C -0.157 4.157 20 C 0.156 3.844 21 N -0.717 5.717 22 C 0.527 3.473 23 O -0.561 6.561 24 C -0.086 4.086 25 H 0.275 0.725 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.402 0.598 34 H 0.107 0.893 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.534 -4.011 -2.517 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.119 4.119 3 Si 0.685 3.315 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.564 4.564 8 H 0.109 0.891 9 C 0.120 3.880 10 H 0.069 0.931 11 C -0.100 4.100 12 Cl -0.203 7.203 13 O -0.212 6.212 14 C 0.115 3.885 15 C -0.211 4.211 16 C -0.091 4.091 17 C -0.140 4.140 18 C -0.068 4.068 19 C -0.176 4.176 20 C 0.032 3.968 21 N -0.368 5.368 22 C 0.315 3.685 23 O -0.440 6.440 24 C -0.125 4.125 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.152 0.848 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.238 0.762 34 H 0.126 0.874 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.676 -3.743 -2.723 13.495 hybrid contribution 0.267 0.908 0.049 0.948 sum 12.943 -2.835 -2.674 13.517 Atomic orbital electron populations 1.69830 1.06196 1.28112 1.46097 1.24958 0.94897 0.98847 0.93203 0.87093 0.80695 0.83710 0.80008 1.18944 1.20128 1.18313 1.20716 0.86571 0.96029 1.53045 0.89104 1.20876 0.95165 0.86701 0.85260 0.93112 1.25950 0.76684 1.05277 1.02046 1.98672 1.24096 1.98924 1.98579 1.86282 1.34160 1.42038 1.58741 1.19041 0.86428 0.92649 0.90364 1.21477 0.97647 0.98408 1.03542 1.20729 0.95180 0.98229 0.94999 1.18992 0.97773 0.95212 1.02004 1.19080 0.95163 0.94512 0.98022 1.20085 0.97016 1.00245 1.00241 1.19968 0.93106 0.94229 0.89526 1.45262 1.46188 1.22849 1.22548 1.19985 0.78733 0.81348 0.88480 1.90752 1.38715 1.72375 1.42185 1.20273 0.97233 1.00589 0.94420 0.91495 0.88325 0.88661 0.84804 0.86071 0.85152 0.90316 0.89099 0.76213 0.87442 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.78 13.96 55.43 0.77 -23.01 16 2 C 0.09 2.26 5.47 -17.82 -0.10 2.17 16 3 Si 0.86 18.83 26.99 -169.99 -4.59 14.24 16 4 H -0.26 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.30 6.83 56.52 0.39 -4.91 16 7 C -0.53 -13.39 9.23 -34.44 -0.32 -13.70 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.18 3.78 1.81 -27.88 -0.05 3.73 16 10 H 0.05 1.10 2.60 -51.93 -0.14 0.97 16 11 C -0.04 -0.70 6.32 37.16 0.23 -0.46 16 12 Cl -0.23 -3.99 25.76 -51.86 -1.34 -5.32 16 13 O -0.30 -6.28 9.68 -19.42 -0.19 -6.47 16 14 C 0.16 2.96 6.18 -39.29 -0.24 2.72 16 15 C -0.19 -3.32 7.23 -39.50 -0.29 -3.60 16 16 C -0.07 -1.07 9.64 -39.52 -0.38 -1.45 16 17 C -0.14 -1.88 5.76 -104.72 -0.60 -2.48 16 18 C -0.07 -0.88 5.81 -104.80 -0.61 -1.49 16 19 C -0.16 -2.38 9.57 -39.33 -0.38 -2.76 16 20 C 0.16 1.50 6.98 -6.06 -0.04 1.45 16 21 N -0.72 -7.51 5.45 -63.20 -0.34 -7.85 16 22 C 0.53 6.90 7.77 -12.03 -0.09 6.80 16 23 O -0.56 -9.21 17.81 5.56 0.10 -9.11 16 24 C -0.09 -1.01 5.85 -29.62 -0.17 -1.18 16 25 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 27 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.13 2.44 4.92 -52.49 -0.26 2.18 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.40 3.49 8.82 -40.82 -0.36 3.13 16 34 H 0.11 1.18 8.11 -51.93 -0.42 0.76 16 35 H 0.11 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -29.24 305.93 -7.72 -36.96 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -3.71 Total: 6.20 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.04 Total: -10.26 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.43 Total: -30.86 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.09 Total: -15.58 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.59 Total: 14.24 kcal Atomic # 17 Polarization: -3.99 SS G_CDS: -1.34 Total: -5.32 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.24 -7.72 -36.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229637128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.173 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds