Wall clock time and date at job start Tue Mar 31 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99864 * 2 1 4 4 H 1.48500 * 109.47067 * 264.75412 * 3 2 1 5 5 H 1.48502 * 109.47124 * 24.75668 * 3 2 1 6 6 H 1.48500 * 109.46789 * 144.75641 * 3 2 1 7 7 C 1.37874 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99918 * 4.83040 * 7 2 1 9 9 C 1.50696 * 119.99911 * 184.83656 * 7 2 1 10 10 H 1.09006 * 109.47241 * 334.98512 * 9 7 2 11 11 C 1.53005 * 109.47320 * 94.98195 * 9 7 2 12 12 Cl 1.80304 * 109.47413 * 184.63724 * 11 9 7 13 13 O 1.42899 * 109.47497 * 214.98155 * 9 7 2 14 14 C 1.35899 * 117.00301 * 141.65028 * 13 9 7 15 15 C 1.38755 * 120.11860 * 4.75261 * 14 13 9 16 16 C 1.37936 * 119.76296 * 180.02562 * 15 14 13 17 17 C 1.38715 * 120.41643 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.96688 * 359.96350 * 17 16 15 19 19 C 1.38504 * 120.12274 * 184.48094 * 14 13 9 20 20 C 1.50279 * 121.65302 * 180.15783 * 18 17 16 21 21 N 1.45266 * 112.00363 * 338.42646 * 20 18 17 22 22 C 1.33442 * 123.56138 * 22.02436 * 21 20 18 23 23 O 1.21280 * 118.58084 * 179.42239 * 22 21 20 24 24 C 1.49764 * 122.84345 * 359.41051 * 22 21 20 25 25 H 0.97003 * 120.00234 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46853 * 304.63935 * 11 9 7 27 27 H 1.09003 * 109.47141 * 64.63684 * 11 9 7 28 28 H 1.07999 * 120.11965 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.79322 * 179.97438 * 16 15 14 30 30 H 1.08009 * 119.82971 * 0.02562 * 19 14 13 31 31 H 1.09003 * 108.97440 * 99.07963 * 20 18 17 32 32 H 1.09001 * 108.97143 * 217.77762 * 20 18 17 33 33 H 0.97008 * 118.22257 * 202.00087 * 21 20 18 34 34 H 1.08993 * 109.15206 * 218.57528 * 24 22 21 35 35 H 1.09008 * 109.13616 * 99.43424 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6075 1.9825 -1.3942 5 1 1.3955 2.6822 0.5863 6 1 3.4869 1.4747 0.8079 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1276 -0.0797 9 6 3.5075 -1.1964 0.1095 10 1 3.9002 -0.2480 -0.2573 11 6 3.9114 -1.3836 1.5733 12 17 5.7032 -1.2504 1.7242 13 8 4.0407 -2.2671 -0.6724 14 6 5.1945 -2.0228 -1.3477 15 6 5.8546 -0.8135 -1.1836 16 6 7.0248 -0.5731 -1.8731 17 6 7.5457 -1.5327 -2.7286 18 6 6.8929 -2.7359 -2.8929 19 6 5.7186 -2.9823 -2.1979 20 6 7.4250 -3.8034 -3.8071 21 7 8.3282 -3.2623 -4.8079 22 6 8.9742 -2.1030 -4.6689 23 8 9.7159 -1.7418 -5.5579 24 6 8.8228 -1.2284 -3.4626 25 1 -0.4851 0.8401 0.0004 26 1 3.4373 -0.6139 2.1823 27 1 3.5901 -2.3672 1.9160 28 1 5.4532 -0.0627 -0.5190 29 1 7.5389 0.3683 -1.7460 30 1 5.2078 -3.9257 -2.3235 31 1 7.9581 -4.5456 -3.2128 32 1 6.5885 -4.2887 -4.3099 33 1 8.4697 -3.7716 -5.6214 34 1 8.8148 -0.1846 -3.7765 35 1 9.6676 -1.3930 -2.7936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229637128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:30 Heat of formation + Delta-G solvation = -83.246493 kcal Electronic energy + Delta-G solvation = -21252.723778 eV Core-core repulsion = 17854.544902 eV Total energy + Delta-G solvation = -3398.178875 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74078 -40.61686 -38.80313 -36.77789 -36.21548 -35.21335 -33.45172 -32.12574 -32.09696 -28.74714 -27.27761 -26.51382 -24.24756 -23.17122 -22.40287 -19.95419 -19.73877 -18.51481 -18.21621 -17.77542 -16.99608 -16.74841 -16.30517 -16.06856 -15.56745 -15.23434 -14.89381 -14.75989 -14.61349 -14.59624 -14.25860 -14.16210 -13.88595 -13.40005 -13.31453 -12.98295 -12.81149 -12.62178 -12.10158 -11.99670 -11.93131 -11.46532 -11.23442 -11.07233 -11.00870 -10.80966 -10.28279 -9.63941 -8.84747 -8.51305 -6.64982 0.34073 0.48852 1.23151 1.29604 1.36541 1.39854 1.54204 2.15961 2.25616 2.49618 2.78829 2.92242 3.54057 3.60317 3.79513 3.92572 4.00674 4.15664 4.22846 4.33826 4.40565 4.44501 4.61410 4.66381 4.73310 4.85940 4.89577 5.06018 5.19074 5.27586 5.49227 5.56246 5.80267 5.83430 5.99836 6.22566 6.47434 6.75232 7.05302 7.14671 8.63530 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.004554 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.646974 B = 6146.510766 C = 6369.940391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.041 3.959 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.235 1.235 7 C -0.537 4.537 8 H 0.047 0.953 9 C 0.183 3.817 10 H 0.054 0.946 11 C -0.034 4.034 12 Cl -0.206 7.206 13 O -0.322 6.322 14 C 0.126 3.874 15 C -0.209 4.209 16 C -0.074 4.074 17 C -0.133 4.133 18 C -0.063 4.063 19 C -0.158 4.158 20 C 0.156 3.844 21 N -0.707 5.707 22 C 0.523 3.477 23 O -0.600 6.600 24 C -0.082 4.082 25 H 0.278 0.722 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.412 0.588 34 H 0.116 0.884 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.303 -3.861 -2.942 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.162 4.162 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.158 1.158 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.127 3.873 10 H 0.071 0.929 11 C -0.097 4.097 12 Cl -0.180 7.180 13 O -0.236 6.236 14 C 0.080 3.920 15 C -0.227 4.227 16 C -0.092 4.092 17 C -0.134 4.134 18 C -0.064 4.064 19 C -0.177 4.177 20 C 0.032 3.968 21 N -0.357 5.357 22 C 0.311 3.689 23 O -0.483 6.483 24 C -0.121 4.121 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.250 0.750 34 H 0.134 0.866 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.457 -3.634 -3.144 16.186 hybrid contribution -0.485 0.711 0.100 0.866 sum 14.972 -2.923 -3.044 15.555 Atomic orbital electron populations 1.69956 1.08011 1.29204 1.48216 1.25720 0.95507 1.02333 0.92638 0.86180 0.80364 0.79215 0.80400 1.18782 1.19542 1.15772 1.20846 0.89008 0.94489 1.53080 0.93485 1.20605 0.92718 0.87259 0.86689 0.92871 1.25574 0.78118 1.05670 1.00340 1.98667 1.21941 1.98905 1.98478 1.86183 1.36059 1.41606 1.59744 1.19382 0.86296 0.94347 0.91996 1.21444 0.98836 0.97913 1.04524 1.20994 0.94293 0.99482 0.94403 1.19277 0.98115 0.94923 1.01094 1.19434 0.94070 0.95302 0.97585 1.20309 0.97601 1.00218 0.99593 1.20158 0.94017 0.93247 0.89329 1.45227 1.45268 1.22186 1.23064 1.20198 0.78434 0.81935 0.88334 1.90745 1.40611 1.73432 1.43471 1.20308 0.96846 1.00892 0.94073 0.91270 0.87846 0.88444 0.86083 0.83688 0.83922 0.87684 0.86662 0.75013 0.86580 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.14 13.96 21.45 0.30 -51.84 16 2 C 0.04 2.14 5.47 84.65 0.46 2.60 16 3 Si 0.92 38.71 26.99 68.60 1.85 40.56 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.23 -8.90 6.83 99.48 0.68 -8.22 16 7 C -0.54 -28.38 9.23 25.60 0.24 -28.14 16 8 H 0.05 2.81 8.06 -2.91 -0.02 2.79 16 9 C 0.18 7.96 1.81 29.85 0.05 8.01 16 10 H 0.05 2.28 2.60 -2.38 -0.01 2.27 16 11 C -0.03 -1.28 6.32 71.98 0.45 -0.82 16 12 Cl -0.21 -6.85 25.76 -2.72 -0.07 -6.92 16 13 O -0.32 -13.67 9.68 -92.41 -0.89 -14.57 16 14 C 0.13 4.48 6.18 22.46 0.14 4.62 16 15 C -0.21 -6.89 7.23 22.32 0.16 -6.73 16 16 C -0.07 -1.95 9.64 22.31 0.22 -1.74 16 17 C -0.13 -3.17 5.76 -19.93 -0.11 -3.29 16 18 C -0.06 -1.47 5.81 -19.98 -0.12 -1.58 16 19 C -0.16 -4.51 9.57 22.43 0.21 -4.30 16 20 C 0.16 2.36 6.98 85.73 0.60 2.96 16 21 N -0.71 -12.32 5.45 -473.01 -2.58 -14.90 16 22 C 0.52 12.14 7.77 87.57 0.68 12.82 16 23 O -0.60 -18.49 17.81 -3.03 -0.05 -18.54 16 24 C -0.08 -1.64 5.85 28.72 0.17 -1.47 16 25 H 0.28 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 27 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 28 H 0.12 4.25 4.92 -2.91 -0.01 4.24 16 29 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.12 1.30 8.10 -2.39 -0.02 1.28 16 33 H 0.41 5.80 8.82 -92.70 -0.82 4.98 16 34 H 0.12 2.17 8.11 -2.39 -0.02 2.15 16 35 H 0.13 2.05 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -65.50 305.93 2.01 -63.50 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.30 Total: 19.76 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 3.15 Total: -17.06 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -2.28 Total: -66.74 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.95 Total: -33.10 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.85 Total: 40.56 kcal Atomic # 17 Polarization: -6.85 SS G_CDS: -0.07 Total: -6.92 kcal Total: -65.50 2.01 -63.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229637128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.748 kcal (2) G-P(sol) polarization free energy of solvation -65.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds