Wall clock time and date at job start Tue Mar 31 2020 07:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31220 * 119.79027 * 2 1 4 4 C 1.33237 * 121.68826 * 179.97438 * 3 2 1 5 5 C 1.47357 * 119.47427 * 179.72090 * 4 3 2 6 6 C 1.33965 * 122.86170 * 180.02562 * 5 4 3 7 7 S 1.75232 * 111.22279 * 179.97438 * 6 5 4 8 8 C 1.75901 * 92.46301 * 0.02562 * 7 6 5 9 9 C 1.39875 * 130.15605 * 180.02562 * 8 7 6 10 10 C 1.37509 * 120.37607 * 179.25632 * 9 8 7 11 11 C 1.38755 * 120.13798 * 0.66595 * 10 9 8 12 12 C 1.37221 * 120.35159 * 359.56916 * 11 10 9 13 13 C 1.39431 * 110.07545 * 359.74999 * 8 7 6 14 14 C 1.40227 * 121.04686 * 359.97438 * 4 3 2 15 15 C 1.36394 * 119.45646 * 359.97438 * 14 4 3 16 16 C 1.40974 * 119.78630 * 179.97438 * 2 1 3 17 17 C 1.40949 * 120.53124 * 359.97438 * 16 2 1 18 18 H 1.07998 * 120.00219 * 24.97548 * 17 16 2 19 19 C 1.39875 * 120.00074 * 204.96920 * 17 16 2 20 20 N 1.30893 * 119.99843 * 14.87470 * 19 17 16 21 21 Si 1.86794 * 120.00092 * 194.86277 * 19 17 16 22 22 H 1.48504 * 109.47003 * 60.00476 * 21 19 17 23 23 H 1.48501 * 109.47173 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47448 * 300.00786 * 21 19 17 25 25 H 1.08999 * 109.46797 * 89.99930 * 1 2 3 26 26 H 1.09000 * 109.46697 * 210.00053 * 1 2 3 27 27 H 1.08999 * 109.46920 * 329.99805 * 1 2 3 28 28 H 1.07998 * 124.38608 * 359.94863 * 6 5 4 29 29 H 1.08002 * 119.81357 * 0.02562 * 9 8 7 30 30 H 1.08004 * 119.92679 * 180.23820 * 10 9 8 31 31 H 1.08002 * 119.82276 * 179.54747 * 11 10 9 32 32 H 1.08001 * 119.80245 * 179.97438 * 12 11 10 33 33 H 1.07997 * 120.27285 * 179.97438 * 14 4 3 34 34 H 1.07997 * 120.77628 * 180.02562 * 15 14 4 35 35 H 0.96996 * 120.00116 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1388 0.0000 4 6 3.4906 1.1829 0.0005 5 6 4.1728 2.4891 -0.0058 6 6 5.5067 2.6125 -0.0062 7 16 5.9879 4.2974 -0.0151 8 6 4.3188 4.8527 -0.0175 9 6 3.8004 6.1518 -0.0247 10 6 2.4409 6.3578 -0.0407 11 6 1.5722 5.2759 -0.0360 12 6 2.0614 3.9939 -0.0243 13 6 3.4513 3.7611 -0.0174 14 6 4.2532 0.0061 0.0016 15 6 3.6213 -1.2026 0.0027 16 6 2.2074 -1.2235 0.0005 17 6 1.5094 -2.4480 0.0016 18 1 0.5053 -2.4976 -0.3928 19 6 2.1173 -3.5991 0.5135 20 7 3.1965 -3.4981 1.2473 21 14 1.3889 -5.2803 0.1502 22 1 1.3723 -5.5059 -1.3175 23 1 2.2133 -6.3287 0.8033 24 1 0.0016 -5.3430 0.6762 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 6.1962 1.7812 -0.0012 29 1 4.4717 6.9978 -0.0301 30 1 2.0485 7.3640 -0.0500 31 1 0.5053 5.4437 -0.0413 32 1 1.3772 3.1583 -0.0203 33 1 5.3320 0.0565 0.0016 34 1 4.1876 -2.1222 0.0040 35 1 3.6178 -4.2962 1.6026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238886119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:23 Heat of formation + Delta-G solvation = 57.846000 kcal Electronic energy + Delta-G solvation = -19959.223801 eV Core-core repulsion = 17012.348876 eV Total energy + Delta-G solvation = -2946.874925 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.32398 -38.33902 -35.18231 -34.00806 -31.68053 -30.89698 -30.27659 -28.90798 -27.02870 -25.45933 -23.22984 -22.28335 -21.79436 -20.48524 -19.11074 -17.60622 -17.44972 -15.95160 -15.35577 -15.17592 -14.81825 -14.34730 -14.04224 -13.64392 -13.56495 -13.17605 -13.01331 -12.78787 -12.07797 -11.93084 -11.75051 -11.63256 -11.50946 -11.36356 -11.33501 -11.01054 -10.93212 -10.70706 -10.59554 -10.25499 -9.90149 -9.60400 -9.20059 -8.38063 -8.18272 -8.12271 -7.82296 -7.12294 -6.90911 -4.61906 1.09886 1.57095 1.97024 2.11313 2.44906 2.80388 2.86856 2.90334 2.92592 3.33414 3.68101 4.10845 4.50476 5.03101 5.12228 5.24431 5.47502 5.52894 5.55927 5.76568 5.92716 6.07428 6.12581 6.21183 6.29809 6.45879 6.51244 6.55927 6.63608 6.71388 6.75490 6.78533 6.86747 6.97609 7.09152 7.22201 7.27945 7.59146 7.71091 7.81451 8.23479 8.43894 8.54245 9.47169 9.81517 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.026585 B = 0.004077 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.976337 B = 6866.204624 C = 7841.201629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.009 3.991 3 N -0.443 5.443 4 C 0.009 3.991 5 C 0.027 3.973 6 C -0.238 4.238 7 S 0.047 5.953 8 C -0.136 4.136 9 C -0.101 4.101 10 C -0.108 4.108 11 C -0.140 4.140 12 C -0.055 4.055 13 C -0.054 4.054 14 C -0.119 4.119 15 C -0.142 4.142 16 C 0.075 3.925 17 C -0.426 4.426 18 H 0.090 0.910 19 C 0.070 3.930 20 N -0.776 5.776 21 Si 0.917 3.083 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.261 1.261 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.162 0.838 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.154 0.846 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 8.465 -1.559 8.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.138 4.138 3 N -0.151 5.151 4 C -0.126 4.126 5 C 0.016 3.984 6 C -0.372 4.372 7 S 0.310 5.690 8 C -0.251 4.251 9 C -0.124 4.124 10 C -0.128 4.128 11 C -0.161 4.161 12 C -0.074 4.074 13 C -0.062 4.062 14 C -0.140 4.140 15 C -0.166 4.166 16 C 0.070 3.930 17 C -0.455 4.455 18 H 0.108 0.892 19 C -0.151 4.151 20 N -0.399 5.399 21 Si 0.740 3.260 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.185 1.185 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.180 0.820 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.171 0.829 33 H 0.118 0.882 34 H 0.147 0.853 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.547 9.749 -1.408 9.971 hybrid contribution -0.811 -2.363 -0.010 2.498 sum 0.736 7.386 -1.418 7.557 Atomic orbital electron populations 1.20276 0.90914 1.01339 1.00472 1.21006 0.95140 0.88006 1.09602 1.66698 1.08487 1.30102 1.09827 1.18275 0.88943 0.89466 1.15931 1.18432 0.91043 0.91506 0.97428 1.24878 0.98149 0.98356 1.15834 1.83572 1.04360 0.99895 1.81215 1.22596 0.97009 0.97290 1.08161 1.20330 0.95349 0.93619 1.03060 1.20946 0.92713 0.98809 1.00380 1.20997 0.99601 0.92509 1.02969 1.21661 0.94096 0.97744 0.93920 1.19189 0.94040 0.90719 1.02284 1.21238 0.98447 0.93289 1.01057 1.21323 0.94699 0.96700 1.03929 1.18429 0.92550 0.93164 0.88898 1.19663 1.01462 0.91969 1.32356 0.89241 1.26105 0.94313 1.02143 0.92504 1.69806 1.16302 1.32563 1.21246 0.86197 0.80061 0.79549 0.80152 1.18459 1.20021 1.18535 0.93205 0.91404 0.93114 0.82016 0.86320 0.85987 0.85956 0.82873 0.88234 0.85282 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 9.57 36.01 0.34 -1.08 16 2 C 0.01 0.21 6.86 -81.82 -0.56 -0.35 16 3 N -0.44 -10.43 7.54 -5.44 -0.04 -10.48 16 4 C 0.01 0.22 6.75 -82.80 -0.56 -0.34 16 5 C 0.03 0.56 5.95 -104.48 -0.62 -0.06 16 6 C -0.24 -4.36 10.36 29.23 0.30 -4.06 16 7 S 0.05 0.74 23.21 -107.50 -2.50 -1.75 16 8 C -0.14 -2.35 6.45 -38.53 -0.25 -2.60 16 9 C -0.10 -1.47 10.06 -39.24 -0.39 -1.86 16 10 C -0.11 -1.45 10.03 -39.66 -0.40 -1.84 16 11 C -0.14 -2.08 10.01 -39.76 -0.40 -2.47 16 12 C -0.05 -1.00 9.53 -38.93 -0.37 -1.37 16 13 C -0.05 -1.06 6.01 -105.22 -0.63 -1.69 16 14 C -0.12 -2.75 9.43 -39.50 -0.37 -3.13 16 15 C -0.14 -3.49 8.72 -39.04 -0.34 -3.83 16 16 C 0.07 1.86 5.59 -106.63 -0.60 1.26 16 17 C -0.43 -10.12 8.14 -37.94 -0.31 -10.43 16 18 H 0.09 1.99 6.83 -52.49 -0.36 1.63 16 19 C 0.07 1.58 5.22 -17.34 -0.09 1.49 16 20 N -0.78 -18.27 10.83 55.54 0.60 -17.66 16 21 Si 0.92 16.81 29.58 -169.99 -5.03 11.78 16 22 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 23 H -0.28 -4.96 7.11 56.52 0.40 -4.56 16 24 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 1.30 6.75 -51.93 -0.35 0.95 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.16 2.71 6.67 -52.49 -0.35 2.36 16 29 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.15 2.98 6.01 -52.49 -0.32 2.66 16 33 H 0.10 2.03 6.52 -52.49 -0.34 1.68 16 34 H 0.13 3.20 6.17 -52.49 -0.32 2.88 16 35 H 0.29 6.14 8.30 -40.82 -0.34 5.81 16 LS Contribution 308.87 15.07 4.65 4.65 Total: -1.00 -26.42 308.87 -10.84 -37.26 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.29 Total: 8.56 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -5.25 Total: -32.36 kcal Atomic # 7 Polarization: -28.70 SS G_CDS: 0.56 Total: -28.14 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.50 Total: -1.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.42 -10.84 -37.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238886119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.109 kcal (2) G-P(sol) polarization free energy of solvation -26.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds