Wall clock time and date at job start Tue Mar 31 2020 07:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31220 * 119.79027 * 2 1 4 4 C 1.33237 * 121.68826 * 179.97438 * 3 2 1 5 5 C 1.47357 * 119.47427 * 179.72090 * 4 3 2 6 6 C 1.33965 * 122.86170 * 180.02562 * 5 4 3 7 7 S 1.75232 * 111.22279 * 179.97438 * 6 5 4 8 8 C 1.75901 * 92.46301 * 0.02562 * 7 6 5 9 9 C 1.39875 * 130.15605 * 180.02562 * 8 7 6 10 10 C 1.37509 * 120.37607 * 179.25632 * 9 8 7 11 11 C 1.38755 * 120.13798 * 0.66595 * 10 9 8 12 12 C 1.37221 * 120.35159 * 359.56916 * 11 10 9 13 13 C 1.39431 * 110.07545 * 359.74999 * 8 7 6 14 14 C 1.40227 * 121.04686 * 359.97438 * 4 3 2 15 15 C 1.36394 * 119.45646 * 359.97438 * 14 4 3 16 16 C 1.40974 * 119.78630 * 179.97438 * 2 1 3 17 17 C 1.40949 * 120.53124 * 359.97438 * 16 2 1 18 18 H 1.07998 * 120.00219 * 24.97548 * 17 16 2 19 19 C 1.39875 * 120.00074 * 204.96920 * 17 16 2 20 20 N 1.30893 * 119.99843 * 14.87470 * 19 17 16 21 21 Si 1.86794 * 120.00092 * 194.86277 * 19 17 16 22 22 H 1.48504 * 109.47003 * 60.00476 * 21 19 17 23 23 H 1.48501 * 109.47173 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47448 * 300.00786 * 21 19 17 25 25 H 1.08999 * 109.46797 * 89.99930 * 1 2 3 26 26 H 1.09000 * 109.46697 * 210.00053 * 1 2 3 27 27 H 1.08999 * 109.46920 * 329.99805 * 1 2 3 28 28 H 1.07998 * 124.38608 * 359.94863 * 6 5 4 29 29 H 1.08002 * 119.81357 * 0.02562 * 9 8 7 30 30 H 1.08004 * 119.92679 * 180.23820 * 10 9 8 31 31 H 1.08002 * 119.82276 * 179.54747 * 11 10 9 32 32 H 1.08001 * 119.80245 * 179.97438 * 12 11 10 33 33 H 1.07997 * 120.27285 * 179.97438 * 14 4 3 34 34 H 1.07997 * 120.77628 * 180.02562 * 15 14 4 35 35 H 0.96996 * 120.00116 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1388 0.0000 4 6 3.4906 1.1829 0.0005 5 6 4.1728 2.4891 -0.0058 6 6 5.5067 2.6125 -0.0062 7 16 5.9879 4.2974 -0.0151 8 6 4.3188 4.8527 -0.0175 9 6 3.8004 6.1518 -0.0247 10 6 2.4409 6.3578 -0.0407 11 6 1.5722 5.2759 -0.0360 12 6 2.0614 3.9939 -0.0243 13 6 3.4513 3.7611 -0.0174 14 6 4.2532 0.0061 0.0016 15 6 3.6213 -1.2026 0.0027 16 6 2.2074 -1.2235 0.0005 17 6 1.5094 -2.4480 0.0016 18 1 0.5053 -2.4976 -0.3928 19 6 2.1173 -3.5991 0.5135 20 7 3.1965 -3.4981 1.2473 21 14 1.3889 -5.2803 0.1502 22 1 1.3723 -5.5059 -1.3175 23 1 2.2133 -6.3287 0.8033 24 1 0.0016 -5.3430 0.6762 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 6.1962 1.7812 -0.0012 29 1 4.4717 6.9978 -0.0301 30 1 2.0485 7.3640 -0.0500 31 1 0.5053 5.4437 -0.0413 32 1 1.3772 3.1583 -0.0203 33 1 5.3320 0.0565 0.0016 34 1 4.1876 -2.1222 0.0040 35 1 3.6178 -4.2962 1.6026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238886119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:22 Heat of formation + Delta-G solvation = 46.902330 kcal Electronic energy + Delta-G solvation = -19959.698354 eV Core-core repulsion = 17012.348876 eV Total energy + Delta-G solvation = -2947.349478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81208 -39.85630 -36.68051 -35.64251 -33.35434 -32.52711 -31.61852 -30.25346 -28.73886 -27.10949 -24.71593 -23.62451 -23.28697 -22.16104 -20.63317 -19.27021 -18.83662 -17.51798 -16.85487 -16.66698 -16.13006 -15.78733 -15.52612 -15.16588 -15.13658 -14.48841 -14.46715 -14.36526 -13.63926 -13.47948 -13.42545 -13.14748 -13.04652 -12.84557 -12.67048 -12.56062 -12.35535 -12.08641 -12.00989 -11.62270 -11.54476 -11.24740 -10.56750 -10.18196 -9.89867 -9.55017 -9.34233 -8.78237 -8.38050 -6.40976 -0.26862 0.31745 0.57354 0.68272 1.03477 1.05225 1.36445 1.40422 1.51293 1.77443 2.14793 2.69038 2.92966 3.67885 3.71613 3.81512 4.00721 4.17648 4.37681 4.44849 4.48137 4.56357 4.61903 4.75229 4.88199 4.92079 4.98135 5.01892 5.09608 5.17407 5.26469 5.31431 5.40059 5.48888 5.57359 5.71832 5.80512 5.94686 5.99132 6.09761 6.44488 6.66975 6.74997 7.68039 8.15029 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.026585 B = 0.004077 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.976337 B = 6866.204624 C = 7841.201629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.012 4.012 3 N -0.449 5.449 4 C 0.000 4.000 5 C -0.013 4.013 6 C -0.235 4.235 7 S 0.103 5.897 8 C -0.158 4.158 9 C -0.099 4.099 10 C -0.096 4.096 11 C -0.131 4.131 12 C -0.087 4.087 13 C -0.086 4.086 14 C -0.130 4.130 15 C -0.163 4.163 16 C 0.044 3.956 17 C -0.451 4.451 18 H 0.098 0.902 19 C 0.032 3.968 20 N -0.810 5.810 21 Si 0.990 3.010 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.253 1.253 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.171 0.829 29 H 0.152 0.848 30 H 0.167 0.833 31 H 0.150 0.850 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 10.607 -1.785 10.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.158 4.158 3 N -0.158 5.158 4 C -0.136 4.136 5 C -0.024 4.024 6 C -0.369 4.369 7 S 0.367 5.633 8 C -0.272 4.272 9 C -0.122 4.122 10 C -0.116 4.116 11 C -0.151 4.151 12 C -0.107 4.107 13 C -0.094 4.094 14 C -0.151 4.151 15 C -0.188 4.188 16 C 0.039 3.961 17 C -0.479 4.479 18 H 0.116 0.884 19 C -0.185 4.185 20 N -0.434 5.434 21 Si 0.809 3.191 22 H -0.182 1.182 23 H -0.193 1.193 24 H -0.177 1.177 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.188 0.812 29 H 0.169 0.831 30 H 0.185 0.815 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.283 11.915 -1.633 12.095 hybrid contribution -0.634 -2.777 0.068 2.849 sum 0.649 9.139 -1.564 9.294 Atomic orbital electron populations 1.20261 0.88510 1.01900 1.01524 1.21626 0.97032 0.87824 1.09331 1.66849 1.08794 1.29954 1.10180 1.18807 0.89202 0.90849 1.14717 1.18574 0.92161 0.91338 1.00346 1.25235 0.97722 1.00939 1.13050 1.83264 1.03096 0.96814 1.80139 1.22937 0.97430 0.97998 1.08870 1.20818 0.96591 0.93273 1.01505 1.21456 0.92043 1.00323 0.97823 1.21360 1.01452 0.91479 1.00838 1.21637 0.93556 0.98839 0.96635 1.19294 0.95058 0.90768 1.04290 1.21467 0.99551 0.93016 1.01032 1.21356 0.95111 0.96855 1.05475 1.18794 0.92966 0.94345 0.89946 1.19928 1.02140 0.92463 1.33413 0.88404 1.26973 0.94427 1.05526 0.91588 1.69862 1.17573 1.33902 1.22027 0.85113 0.79456 0.74640 0.79857 1.18227 1.19345 1.17695 0.91788 0.91233 0.91991 0.81162 0.83074 0.81530 0.83215 0.85139 0.86337 0.86307 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.59 9.57 71.24 0.68 -1.90 16 2 C -0.01 -0.61 6.86 43.32 0.30 -0.31 16 3 N -0.45 -22.14 7.54 -171.14 -1.29 -23.43 16 4 C 0.00 0.01 6.75 41.82 0.28 0.29 16 5 C -0.01 -0.54 5.95 -19.77 -0.12 -0.65 16 6 C -0.23 -8.58 10.36 66.85 0.69 -7.89 16 7 S 0.10 3.08 23.21 -56.49 -1.31 1.77 16 8 C -0.16 -5.16 6.45 22.95 0.15 -5.02 16 9 C -0.10 -2.52 10.06 22.49 0.23 -2.29 16 10 C -0.10 -2.17 10.03 22.22 0.22 -1.94 16 11 C -0.13 -3.57 10.01 22.15 0.22 -3.35 16 12 C -0.09 -3.18 9.53 22.69 0.22 -2.96 16 13 C -0.09 -3.39 6.01 -20.25 -0.12 -3.52 16 14 C -0.13 -6.30 9.43 22.32 0.21 -6.09 16 15 C -0.16 -8.48 8.72 22.62 0.20 -8.28 16 16 C 0.04 2.32 5.59 -21.16 -0.12 2.20 16 17 C -0.45 -22.17 8.14 23.33 0.19 -21.98 16 18 H 0.10 4.45 6.83 -2.91 -0.02 4.43 16 19 C 0.03 1.50 5.22 85.23 0.44 1.94 16 20 N -0.81 -39.43 10.83 21.82 0.24 -39.20 16 21 Si 0.99 34.57 29.58 68.60 2.03 36.60 16 22 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 23 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 24 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 26 H 0.07 2.71 6.75 -2.39 -0.02 2.70 16 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.17 5.69 6.67 -2.91 -0.02 5.67 16 29 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 30 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.13 5.28 6.01 -2.91 -0.02 5.26 16 33 H 0.12 5.04 6.52 -2.91 -0.02 5.02 16 34 H 0.12 6.28 6.17 -2.91 -0.02 6.26 16 35 H 0.29 12.92 8.30 -92.71 -0.77 12.15 16 Total: -1.00 -60.41 308.87 4.47 -55.94 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 1.13 Total: 30.05 kcal Atomic # 6 Polarization: -65.41 SS G_CDS: 3.67 Total: -61.74 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -1.05 Total: -62.62 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.31 Total: 1.77 kcal Total: -60.41 4.47 -55.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238886119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.841 kcal (2) G-P(sol) polarization free energy of solvation -60.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds