Wall clock time and date at job start Tue Mar 31 2020 07:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36212 * 120.05670 * 2 1 4 4 C 1.40011 * 120.11286 * 179.97438 * 3 2 1 5 5 C 1.47830 * 119.88738 * 180.02562 * 4 3 2 6 6 C 1.40170 * 120.12060 * 0.02562 * 5 4 3 7 7 C 1.35777 * 120.61411 * 179.97438 * 6 5 4 8 8 C 1.41257 * 120.63815 * 359.97438 * 7 6 5 9 9 N 1.34480 * 129.49285 * 180.02562 * 8 7 6 10 10 C 1.28028 * 117.90701 * 179.97438 * 9 8 7 11 11 S 1.70641 * 111.52294 * 359.97438 * 10 9 8 12 12 C 1.40140 * 118.73930 * 0.02562 * 8 7 6 13 13 C 1.38952 * 120.40636 * 359.74747 * 12 8 7 14 14 C 1.40038 * 120.22073 * 0.04423 * 4 3 2 15 15 C 1.36175 * 120.12015 * 359.97438 * 14 4 3 16 16 C 1.40945 * 120.05371 * 180.02562 * 2 1 3 17 17 C 1.40970 * 120.11010 * 0.27383 * 16 2 1 18 18 H 1.07992 * 120.00789 * 333.35588 * 17 16 2 19 19 C 1.39977 * 119.99493 * 153.35807 * 17 16 2 20 20 N 1.30822 * 119.99971 * 343.77884 * 19 17 16 21 21 Si 1.86800 * 119.99867 * 163.78203 * 19 17 16 22 22 H 1.48502 * 109.46971 * 90.00027 * 21 19 17 23 23 H 1.48496 * 109.47127 * 209.99496 * 21 19 17 24 24 H 1.48496 * 109.47392 * 329.99984 * 21 19 17 25 25 H 1.08994 * 109.47527 * 269.98044 * 1 2 3 26 26 H 1.09003 * 109.46631 * 29.98078 * 1 2 3 27 27 H 1.08996 * 109.46927 * 149.97416 * 1 2 3 28 28 H 1.07998 * 119.94707 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.69687 * 359.95406 * 6 5 4 30 30 H 1.08001 * 119.68433 * 179.97438 * 7 6 5 31 31 H 1.07992 * 124.23585 * 180.02562 * 10 9 8 32 32 H 1.08002 * 120.08145 * 180.25276 * 13 12 8 33 33 H 1.08003 * 119.94219 * 179.97438 * 14 4 3 34 34 H 1.07998 * 120.06557 * 179.97438 * 15 14 4 35 35 H 0.97001 * 119.99917 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5894 1.1803 0.0005 5 6 4.3248 2.4627 0.0011 6 6 3.6229 3.6761 0.0017 7 6 4.2882 4.8597 0.0027 8 6 5.7004 4.8918 0.0038 9 7 6.5319 5.9487 0.0054 10 6 7.7916 5.7201 0.0067 11 16 8.1241 4.0464 0.0067 12 6 6.4019 3.6786 0.0033 13 6 5.7166 2.4699 0.0069 14 6 4.2955 -0.0290 0.0002 15 6 3.6228 -1.2130 -0.0002 16 6 2.2129 -1.2200 -0.0005 17 6 1.5116 -2.4428 -0.0069 18 1 0.5161 -2.4966 0.4082 19 6 2.1057 -3.5874 -0.5513 20 7 3.1527 -3.4747 -1.3275 21 14 1.4032 -5.2757 -0.1697 22 1 0.3787 -5.6268 -1.1857 23 1 2.4936 -6.2833 -0.1976 24 1 0.7789 -5.2591 1.1776 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6494 2.1143 -0.0004 29 1 2.5430 3.6694 0.0009 30 1 3.7323 5.7857 0.0027 31 1 8.5488 6.4901 0.0084 32 1 6.2625 1.5380 0.0106 33 1 5.3755 -0.0227 0.0002 34 1 4.1682 -2.1452 -0.0009 35 1 3.5642 -4.2679 -1.7050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240346866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:39 Heat of formation + Delta-G solvation = 62.194439 kcal Electronic energy + Delta-G solvation = -19589.864742 eV Core-core repulsion = 16643.178379 eV Total energy + Delta-G solvation = -2946.686363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.00697 -38.24434 -36.42210 -33.95688 -32.11314 -30.78358 -30.44795 -28.51178 -26.41430 -25.47866 -23.91413 -22.71254 -21.73618 -20.39301 -19.40438 -18.12082 -17.53114 -16.12999 -15.66601 -15.53350 -15.01976 -14.45774 -14.11754 -13.92835 -13.45890 -13.18031 -13.09939 -12.79772 -12.47476 -12.25258 -11.88909 -11.80808 -11.58270 -11.31116 -11.23684 -11.05036 -10.74982 -10.58762 -10.48420 -9.88846 -9.77369 -9.55852 -9.48874 -9.38500 -8.54808 -7.96987 -7.61070 -7.14719 -6.97736 -4.55772 0.61478 1.51541 1.55548 1.96498 2.23068 2.78330 2.91035 2.93101 2.95996 3.17269 3.70154 4.05546 4.24597 4.51989 4.93941 5.26967 5.39880 5.44480 5.59854 5.64984 5.83209 6.03494 6.16194 6.22511 6.25975 6.45852 6.49065 6.53685 6.63391 6.69369 6.79859 6.86813 7.03114 7.11063 7.23015 7.42052 7.68687 7.80965 7.83285 7.91128 8.02281 8.34516 8.57375 8.70156 9.84519 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.003442 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.210939 B = 8133.450520 C = 9018.556215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.201 4.201 3 C -0.054 4.054 4 C -0.210 4.210 5 C 0.056 3.944 6 C -0.127 4.127 7 C -0.051 4.051 8 C 0.023 3.977 9 N -0.454 5.454 10 C 0.034 3.966 11 S 0.059 5.941 12 C -0.142 4.142 13 C -0.120 4.120 14 C -0.073 4.073 15 C -0.169 4.169 16 C 0.125 3.875 17 C -0.434 4.434 18 H 0.087 0.913 19 C 0.072 3.928 20 N -0.772 5.772 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.258 1.258 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.195 0.805 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.152 7.274 1.604 8.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.202 4.202 3 C -0.072 4.072 4 C -0.211 4.211 5 C 0.052 3.948 6 C -0.147 4.147 7 C -0.072 4.072 8 C -0.095 4.095 9 N -0.166 5.166 10 C -0.271 4.271 11 S 0.311 5.689 12 C -0.261 4.261 13 C -0.144 4.144 14 C -0.091 4.091 15 C -0.188 4.188 16 C 0.122 3.878 17 C -0.461 4.461 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.395 5.395 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.181 1.181 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.212 0.788 32 H 0.146 0.854 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.104 7.213 1.446 8.953 hybrid contribution -0.888 -0.650 -0.005 1.101 sum 4.215 6.562 1.441 7.931 Atomic orbital electron populations 1.20430 0.93216 1.00828 0.99888 1.19453 0.94625 0.92952 1.13157 1.20287 0.92634 0.96272 0.97996 1.17953 0.92506 0.90147 1.20504 1.18966 0.91490 0.93349 0.90962 1.20846 1.00414 0.91160 1.02316 1.20185 0.89816 0.98472 0.98692 1.19062 0.94882 0.85756 1.09839 1.66031 1.02741 1.33840 1.13985 1.27737 0.95642 0.98809 1.04877 1.83793 1.04566 1.04746 1.75747 1.23608 0.95469 0.98839 1.08136 1.20303 0.93495 0.94802 1.05795 1.20524 0.97432 0.92405 0.98770 1.20970 0.94427 0.96660 1.06759 1.17638 0.91953 0.91744 0.86457 1.19779 1.02070 0.92625 1.31645 0.89507 1.26087 0.94161 1.02006 0.92691 1.69814 1.17188 1.32680 1.19796 0.86225 0.79622 0.80133 0.80452 1.19143 1.19784 1.18120 0.93802 0.94099 0.91969 0.88658 0.84922 0.85581 0.78835 0.85394 0.88930 0.86320 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.40 36.01 0.34 -1.30 16 2 C -0.20 -4.45 5.90 -104.32 -0.62 -5.06 16 3 C -0.05 -1.12 9.00 -39.65 -0.36 -1.47 16 4 C -0.21 -4.42 5.90 -104.63 -0.62 -5.04 16 5 C 0.06 1.06 5.88 -104.90 -0.62 0.45 16 6 C -0.13 -2.14 9.33 -39.74 -0.37 -2.51 16 7 C -0.05 -0.82 10.03 -39.32 -0.39 -1.21 16 8 C 0.02 0.40 7.00 -84.85 -0.59 -0.19 16 9 N -0.45 -7.32 10.56 -12.83 -0.14 -7.45 16 10 C 0.03 0.44 12.10 51.18 0.62 1.06 16 11 S 0.06 0.80 23.17 -107.50 -2.49 -1.69 16 12 C -0.14 -2.44 6.54 -38.60 -0.25 -2.69 16 13 C -0.12 -2.18 9.45 -38.97 -0.37 -2.55 16 14 C -0.07 -1.60 9.35 -39.65 -0.37 -1.98 16 15 C -0.17 -4.06 8.61 -39.28 -0.34 -4.40 16 16 C 0.13 3.04 5.56 -106.80 -0.59 2.44 16 17 C -0.43 -10.29 8.09 -37.90 -0.31 -10.60 16 18 H 0.09 1.95 6.88 -52.49 -0.36 1.59 16 19 C 0.07 1.62 5.15 -17.33 -0.09 1.53 16 20 N -0.77 -18.18 10.97 55.55 0.61 -17.57 16 21 Si 0.91 16.86 29.59 -169.99 -5.03 11.83 16 22 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 24 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.06 1.19 6.77 -51.93 -0.35 0.84 16 28 H 0.10 1.72 6.16 -52.49 -0.32 1.40 16 29 H 0.13 1.98 6.16 -52.49 -0.32 1.66 16 30 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.13 2.22 6.17 -52.49 -0.32 1.90 16 33 H 0.09 1.85 6.17 -52.48 -0.32 1.53 16 34 H 0.12 2.93 6.23 -52.49 -0.33 2.60 16 35 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 LS Contribution 308.08 15.07 4.64 4.64 Total: -1.00 -26.19 308.08 -10.49 -36.68 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -3.16 Total: 7.07 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: -4.93 Total: -33.51 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.47 Total: -25.02 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.19 -10.49 -36.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240346866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.870 kcal (2) G-P(sol) polarization free energy of solvation -26.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds