Wall clock time and date at job start Tue Mar 31 2020 07:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36212 * 120.05670 * 2 1 4 4 C 1.40011 * 120.11286 * 179.97438 * 3 2 1 5 5 C 1.47830 * 119.88738 * 180.02562 * 4 3 2 6 6 C 1.40170 * 120.12060 * 0.02562 * 5 4 3 7 7 C 1.35777 * 120.61411 * 179.97438 * 6 5 4 8 8 C 1.41257 * 120.63815 * 359.97438 * 7 6 5 9 9 N 1.34480 * 129.49285 * 180.02562 * 8 7 6 10 10 C 1.28028 * 117.90701 * 179.97438 * 9 8 7 11 11 S 1.70641 * 111.52294 * 359.97438 * 10 9 8 12 12 C 1.40140 * 118.73930 * 0.02562 * 8 7 6 13 13 C 1.38952 * 120.40636 * 359.74747 * 12 8 7 14 14 C 1.40038 * 120.22073 * 0.04423 * 4 3 2 15 15 C 1.36175 * 120.12015 * 359.97438 * 14 4 3 16 16 C 1.40945 * 120.05371 * 180.02562 * 2 1 3 17 17 C 1.40970 * 120.11010 * 0.27383 * 16 2 1 18 18 H 1.07992 * 120.00789 * 333.35588 * 17 16 2 19 19 C 1.39977 * 119.99493 * 153.35807 * 17 16 2 20 20 N 1.30822 * 119.99971 * 343.77884 * 19 17 16 21 21 Si 1.86800 * 119.99867 * 163.78203 * 19 17 16 22 22 H 1.48502 * 109.46971 * 90.00027 * 21 19 17 23 23 H 1.48496 * 109.47127 * 209.99496 * 21 19 17 24 24 H 1.48496 * 109.47392 * 329.99984 * 21 19 17 25 25 H 1.08994 * 109.47527 * 269.98044 * 1 2 3 26 26 H 1.09003 * 109.46631 * 29.98078 * 1 2 3 27 27 H 1.08996 * 109.46927 * 149.97416 * 1 2 3 28 28 H 1.07998 * 119.94707 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.69687 * 359.95406 * 6 5 4 30 30 H 1.08001 * 119.68433 * 179.97438 * 7 6 5 31 31 H 1.07992 * 124.23585 * 180.02562 * 10 9 8 32 32 H 1.08002 * 120.08145 * 180.25276 * 13 12 8 33 33 H 1.08003 * 119.94219 * 179.97438 * 14 4 3 34 34 H 1.07998 * 120.06557 * 179.97438 * 15 14 4 35 35 H 0.97001 * 119.99917 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5894 1.1803 0.0005 5 6 4.3248 2.4627 0.0011 6 6 3.6229 3.6761 0.0017 7 6 4.2882 4.8597 0.0027 8 6 5.7004 4.8918 0.0038 9 7 6.5319 5.9487 0.0054 10 6 7.7916 5.7201 0.0067 11 16 8.1241 4.0464 0.0067 12 6 6.4019 3.6786 0.0033 13 6 5.7166 2.4699 0.0069 14 6 4.2955 -0.0290 0.0002 15 6 3.6228 -1.2130 -0.0002 16 6 2.2129 -1.2200 -0.0005 17 6 1.5116 -2.4428 -0.0069 18 1 0.5161 -2.4966 0.4082 19 6 2.1057 -3.5874 -0.5513 20 7 3.1527 -3.4747 -1.3275 21 14 1.4032 -5.2757 -0.1697 22 1 0.3787 -5.6268 -1.1857 23 1 2.4936 -6.2833 -0.1976 24 1 0.7789 -5.2591 1.1776 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6494 2.1143 -0.0004 29 1 2.5430 3.6694 0.0009 30 1 3.7323 5.7857 0.0027 31 1 8.5488 6.4901 0.0084 32 1 6.2625 1.5380 0.0106 33 1 5.3755 -0.0227 0.0002 34 1 4.1682 -2.1452 -0.0009 35 1 3.5642 -4.2679 -1.7050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240346866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:38 Heat of formation + Delta-G solvation = 50.868136 kcal Electronic energy + Delta-G solvation = -19590.355887 eV Core-core repulsion = 16643.178379 eV Total energy + Delta-G solvation = -2947.177508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29694 -39.82503 -37.79171 -35.57846 -33.67610 -32.20611 -31.94595 -29.99728 -27.98662 -26.92055 -25.34199 -24.06645 -23.22062 -21.86633 -20.97314 -19.37304 -19.19824 -17.46337 -17.22090 -16.88626 -16.41397 -15.70199 -15.57211 -15.44728 -14.84473 -14.74578 -14.38281 -14.35785 -13.88375 -13.74184 -13.29966 -13.26310 -13.11205 -12.85618 -12.77025 -12.56808 -12.23302 -12.05465 -11.86330 -11.39558 -11.14975 -11.11701 -11.07970 -10.63374 -10.00968 -9.29528 -9.22206 -8.76728 -8.56860 -6.30312 -0.64303 0.23192 0.33809 0.76913 0.80334 1.18370 1.36537 1.40193 1.52541 1.72083 2.17255 2.58328 2.95558 3.14237 3.67360 3.73333 3.95585 4.14952 4.29495 4.34077 4.39204 4.49643 4.73087 4.75267 4.87601 4.93577 5.05779 5.09689 5.15966 5.20011 5.28419 5.36302 5.39690 5.59065 5.74091 5.74713 6.02502 6.12468 6.22612 6.32671 6.63270 6.63752 6.86681 6.99833 8.23527 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.003442 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.210939 B = 8133.450520 C = 9018.556215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.215 4.215 3 C -0.064 4.064 4 C -0.203 4.203 5 C 0.025 3.975 6 C -0.120 4.120 7 C -0.057 4.057 8 C 0.025 3.975 9 N -0.485 5.485 10 C 0.060 3.940 11 S 0.104 5.896 12 C -0.180 4.180 13 C -0.119 4.119 14 C -0.086 4.086 15 C -0.193 4.193 16 C 0.093 3.907 17 C -0.470 4.470 18 H 0.088 0.912 19 C 0.034 3.966 20 N -0.813 5.813 21 Si 0.981 3.019 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.256 1.256 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.126 0.874 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.242 0.758 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 9.995 1.882 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.216 4.216 3 C -0.082 4.082 4 C -0.204 4.204 5 C 0.021 3.979 6 C -0.140 4.140 7 C -0.078 4.078 8 C -0.094 4.094 9 N -0.198 5.198 10 C -0.245 4.245 11 S 0.357 5.643 12 C -0.298 4.298 13 C -0.142 4.142 14 C -0.104 4.104 15 C -0.212 4.212 16 C 0.090 3.910 17 C -0.498 4.498 18 H 0.106 0.894 19 C -0.183 4.183 20 N -0.437 5.437 21 Si 0.802 3.198 22 H -0.185 1.185 23 H -0.193 1.193 24 H -0.180 1.180 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.258 0.742 32 H 0.143 0.857 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.960 9.933 1.726 11.712 hybrid contribution -0.783 -1.025 -0.076 1.292 sum 5.177 8.908 1.650 10.435 Atomic orbital electron populations 1.20412 0.91106 1.01451 1.00844 1.19891 0.96459 0.92736 1.12508 1.20608 0.92732 0.97118 0.97733 1.18253 0.93069 0.90784 1.18325 1.18949 0.92001 0.93146 0.93778 1.21000 1.01289 0.90499 1.01195 1.20472 0.89845 0.99202 0.98234 1.19483 0.95749 0.86183 1.07980 1.66153 1.03718 1.33333 1.16607 1.28684 0.95673 0.99768 1.00334 1.83735 1.01444 1.04713 1.74396 1.23887 0.98082 0.98534 1.09315 1.20360 0.93531 0.95367 1.04922 1.20708 0.98150 0.92515 0.99069 1.20938 0.94912 0.96637 1.08740 1.17984 0.92273 0.93100 0.87658 1.19944 1.02620 0.93534 1.33710 0.89358 1.26865 0.94294 1.05218 0.91940 1.69876 1.18856 1.33692 1.21291 0.85202 0.78887 0.75611 0.80132 1.18525 1.19326 1.17966 0.92559 0.91750 0.92977 0.85656 0.83156 0.83034 0.74162 0.85700 0.87878 0.88167 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.06 9.40 71.24 0.67 -2.39 16 2 C -0.21 -9.70 5.90 -19.67 -0.12 -9.82 16 3 C -0.06 -2.65 9.00 22.23 0.20 -2.45 16 4 C -0.20 -8.66 5.90 -19.87 -0.12 -8.78 16 5 C 0.02 0.93 5.88 -20.04 -0.12 0.81 16 6 C -0.12 -3.79 9.33 22.17 0.21 -3.58 16 7 C -0.06 -1.69 10.03 22.44 0.23 -1.46 16 8 C 0.02 0.79 7.00 39.94 0.28 1.07 16 9 N -0.49 -13.85 10.56 -194.42 -2.05 -15.91 16 10 C 0.06 1.27 12.10 130.80 1.58 2.85 16 11 S 0.10 2.47 23.17 -56.49 -1.31 1.17 16 12 C -0.18 -5.81 6.54 22.90 0.15 -5.66 16 13 C -0.12 -4.22 9.45 22.67 0.21 -4.01 16 14 C -0.09 -3.97 9.35 22.23 0.21 -3.76 16 15 C -0.19 -9.87 8.61 22.46 0.19 -9.68 16 16 C 0.09 4.73 5.56 -21.27 -0.12 4.61 16 17 C -0.47 -23.51 8.09 23.36 0.19 -23.32 16 18 H 0.09 4.18 6.88 -2.91 -0.02 4.16 16 19 C 0.03 1.60 5.15 85.26 0.44 2.04 16 20 N -0.81 -40.58 10.97 21.83 0.24 -40.34 16 21 Si 0.98 35.83 29.59 68.60 2.03 37.86 16 22 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 23 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 27 H 0.05 2.03 6.77 -2.39 -0.02 2.02 16 28 H 0.13 4.30 6.16 -2.91 -0.02 4.29 16 29 H 0.15 4.10 6.16 -2.91 -0.02 4.08 16 30 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.24 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.13 4.37 6.17 -2.91 -0.02 4.36 16 33 H 0.10 4.34 6.17 -2.91 -0.02 4.32 16 34 H 0.10 5.36 6.23 -2.91 -0.02 5.35 16 35 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 Total: -1.00 -59.39 308.08 4.14 -55.26 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 1.14 Total: 25.48 kcal Atomic # 6 Polarization: -67.61 SS G_CDS: 4.09 Total: -63.52 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -1.81 Total: -56.25 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.31 Total: 1.17 kcal Total: -59.39 4.14 -55.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240346866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.128 kcal (2) G-P(sol) polarization free energy of solvation -59.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds