Wall clock time and date at job start Tue Mar 31 2020 07:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36214 * 119.93922 * 2 1 4 4 C 1.40950 * 119.88539 * 180.02562 * 3 2 1 5 5 C 1.40970 * 120.11223 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00251 * 24.70401 * 5 4 3 7 7 C 1.39978 * 119.99938 * 204.71595 * 5 4 3 8 8 N 1.30820 * 120.00026 * 17.96837 * 7 5 4 9 9 Si 1.86804 * 119.99796 * 197.98099 * 7 5 4 10 10 H 1.48501 * 109.47071 * 89.99562 * 9 7 5 11 11 H 1.48496 * 109.46798 * 209.99384 * 9 7 5 12 12 H 1.48495 * 109.47218 * 329.99176 * 9 7 5 13 13 C 1.40980 * 119.77638 * 359.97438 * 4 3 2 14 14 C 1.36187 * 119.88057 * 359.69415 * 13 4 3 15 15 C 1.40001 * 119.94498 * 179.97438 * 2 1 3 16 16 C 1.47827 * 119.88803 * 0.02562 * 15 2 1 17 17 C 1.40164 * 120.12544 * 309.99929 * 16 15 2 18 18 C 1.35777 * 120.62199 * 179.97438 * 17 16 15 19 19 C 1.41255 * 120.63379 * 0.02562 * 18 17 16 20 20 N 1.34477 * 129.48965 * 179.97438 * 19 18 17 21 21 C 1.28026 * 117.90539 * 179.97438 * 20 19 18 22 22 S 1.70639 * 111.52695 * 0.02562 * 21 20 19 23 23 C 1.40138 * 118.73984 * 359.97438 * 19 18 17 24 24 C 1.38959 * 120.40793 * 359.97438 * 23 19 18 25 25 H 1.08997 * 109.46948 * 270.02085 * 1 2 3 26 26 H 1.09005 * 109.47056 * 30.02327 * 1 2 3 27 27 H 1.09007 * 109.46853 * 150.02348 * 1 2 3 28 28 H 1.08007 * 120.06083 * 359.97438 * 3 2 1 29 29 H 0.97000 * 119.99819 * 180.02562 * 8 7 5 30 30 H 1.07996 * 120.05949 * 180.02562 * 13 4 3 31 31 H 1.07998 * 119.93954 * 180.31857 * 14 13 4 32 32 H 1.08000 * 119.69317 * 359.95581 * 17 16 15 33 33 H 1.07997 * 119.68266 * 180.02562 * 18 17 16 34 34 H 1.07998 * 124.23893 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.07339 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1804 0.0000 4 6 3.5963 1.1790 -0.0005 5 6 4.3047 2.3978 -0.0011 6 1 3.8416 3.2918 0.3898 7 6 5.6083 2.4495 -0.5085 8 7 6.0451 1.4940 -1.2881 9 14 6.7243 3.8825 -0.0721 10 1 7.4834 3.5605 1.1630 11 1 7.6740 4.1276 -1.1870 12 1 5.9027 5.0985 0.1547 13 6 4.2953 -0.0453 -0.0005 14 6 3.6062 -1.2199 0.0063 15 6 2.2059 -1.2131 0.0005 16 6 1.4630 -2.4912 0.0005 17 6 0.4354 -2.7076 0.9289 18 6 -0.2538 -3.8774 0.9376 19 6 0.0516 -4.8995 0.0116 20 7 -0.5083 -6.1130 -0.1381 21 6 -0.0531 -6.8731 -1.0623 22 16 1.2168 -6.1233 -1.9207 23 6 1.0790 -4.6831 -0.9165 24 6 1.7807 -3.4837 -0.9220 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6468 2.1157 -0.0004 29 1 6.9485 1.5296 -1.6393 30 1 5.3753 -0.0516 -0.0005 31 1 4.1408 -2.1584 0.0115 32 1 0.1896 -1.9367 1.6443 33 1 -1.0429 -4.0279 1.6593 34 1 -0.4261 -7.8646 -1.2723 35 1 2.5717 -3.3228 -1.6394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240347245.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:27 Heat of formation + Delta-G solvation = 62.089391 kcal Electronic energy + Delta-G solvation = -19723.324159 eV Core-core repulsion = 16776.633241 eV Total energy + Delta-G solvation = -2946.690918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.11766 -38.25120 -36.35382 -34.07108 -31.63079 -31.17840 -30.44151 -28.64130 -25.98286 -25.73735 -23.99801 -22.75274 -21.32271 -20.41122 -19.98753 -18.15447 -17.07213 -16.34387 -15.72789 -15.45620 -14.99440 -14.57514 -14.00816 -13.87787 -13.58681 -13.47797 -13.18541 -12.74113 -12.45165 -12.30843 -12.04710 -11.70052 -11.57814 -11.40217 -11.17245 -11.00456 -10.75412 -10.60819 -10.34436 -9.94629 -9.81178 -9.55911 -9.54842 -9.34564 -8.40633 -7.95799 -7.56043 -7.20123 -6.96825 -4.50933 0.59155 1.43147 1.48093 1.88374 2.33887 2.76143 2.96214 2.97799 3.00204 3.10793 3.77946 3.99811 4.15971 4.44644 4.88518 5.20537 5.35555 5.47330 5.57887 5.62947 5.85186 5.89957 5.98793 6.14352 6.24094 6.26660 6.40044 6.49669 6.52195 6.78726 6.82051 6.90802 6.99803 7.14810 7.20809 7.47856 7.71215 7.77759 7.89456 7.97024 8.10461 8.45102 8.68396 8.79571 9.95393 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.029520 B = 0.003485 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.282417 B = 8032.924849 C = 8726.982492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.031 4.031 3 C -0.227 4.227 4 C 0.122 3.878 5 C -0.448 4.448 6 H 0.082 0.918 7 C 0.074 3.926 8 N -0.778 5.778 9 Si 0.912 3.088 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.260 1.260 13 C -0.173 4.173 14 C -0.070 4.070 15 C -0.212 4.212 16 C 0.050 3.950 17 C -0.108 4.108 18 C -0.062 4.062 19 C 0.041 3.959 20 N -0.458 5.458 21 C 0.042 3.958 22 S 0.068 5.932 23 C -0.155 4.155 24 C -0.097 4.097 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.285 0.715 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.197 0.803 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -8.981 0.162 10.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.031 4.031 3 C -0.247 4.247 4 C 0.119 3.881 5 C -0.476 4.476 6 H 0.100 0.900 7 C -0.146 4.146 8 N -0.402 5.402 9 Si 0.735 3.265 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.184 1.184 13 C -0.192 4.192 14 C -0.089 4.089 15 C -0.214 4.214 16 C 0.046 3.954 17 C -0.128 4.128 18 C -0.083 4.083 19 C -0.078 4.078 20 N -0.170 5.170 21 C -0.263 4.263 22 S 0.320 5.680 23 C -0.274 4.274 24 C -0.120 4.120 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.213 0.787 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.767 -9.654 -0.492 11.256 hybrid contribution 0.383 1.052 0.596 1.268 sum -5.384 -8.603 0.104 10.149 Atomic orbital electron populations 1.20845 0.93717 1.01348 1.00820 1.19063 0.93508 0.92609 0.97903 1.20526 0.94169 0.95428 1.14529 1.17702 0.90950 0.93216 0.86244 1.19694 0.97550 0.96206 1.34137 0.89989 1.26020 0.98543 0.97503 0.92522 1.69824 1.17951 1.31620 1.20769 0.86246 0.79678 0.81322 0.79211 1.19035 1.20115 1.18403 1.20968 0.99744 0.91359 1.07172 1.20437 0.92263 0.97082 0.99111 1.17799 0.92483 0.89307 1.21805 1.18953 0.92473 0.92897 0.91065 1.21023 0.96191 0.96605 0.99005 1.20228 0.99833 0.91235 0.97025 1.19138 0.96422 0.92431 0.99786 1.66076 1.28199 1.03698 1.19057 1.27834 0.98673 1.03847 0.95956 1.83867 1.37922 1.08643 1.37558 1.23684 1.02889 0.99674 1.01103 1.20519 1.00557 0.90701 1.00202 0.92354 0.92712 0.92532 0.88663 0.90438 0.86360 0.89225 0.84809 0.85453 0.78674 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 8.43 36.01 0.30 -1.57 16 2 C -0.03 -0.64 5.83 -104.69 -0.61 -1.25 16 3 C -0.23 -5.23 9.36 -39.28 -0.37 -5.60 16 4 C 0.12 3.06 5.57 -106.80 -0.60 2.46 16 5 C -0.45 -11.15 9.03 -37.90 -0.34 -11.49 16 6 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 7 C 0.07 1.75 5.13 -17.33 -0.09 1.66 16 8 N -0.78 -18.93 10.96 55.55 0.61 -18.32 16 9 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 10 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 11 H -0.28 -5.21 7.11 56.52 0.40 -4.80 16 12 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 13 C -0.17 -4.25 8.63 -39.28 -0.34 -4.59 16 14 C -0.07 -1.57 9.43 -39.64 -0.37 -1.94 16 15 C -0.21 -4.45 5.50 -104.64 -0.58 -5.02 16 16 C 0.05 0.92 4.71 -104.90 -0.49 0.42 16 17 C -0.11 -1.74 7.79 -39.74 -0.31 -2.05 16 18 C -0.06 -0.96 10.03 -39.32 -0.39 -1.35 16 19 C 0.04 0.68 7.00 -84.85 -0.59 0.08 16 20 N -0.46 -7.04 10.56 -12.83 -0.14 -7.18 16 21 C 0.04 0.51 12.10 51.18 0.62 1.13 16 22 S 0.07 0.87 23.17 -107.50 -2.49 -1.62 16 23 C -0.16 -2.55 6.54 -38.60 -0.25 -2.80 16 24 C -0.10 -1.70 9.53 -38.97 -0.37 -2.07 16 25 H 0.06 0.87 7.47 -51.93 -0.39 0.49 16 26 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 27 H 0.06 0.93 6.44 -51.93 -0.33 0.60 16 28 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 29 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 30 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 31 H 0.09 1.84 8.04 -52.49 -0.42 1.42 16 32 H 0.13 1.97 6.82 -52.49 -0.36 1.62 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.13 2.23 8.04 -52.49 -0.42 1.80 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -26.76 311.63 -10.62 -37.38 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -3.48 Total: 6.53 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: -4.78 Total: -33.98 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.47 Total: -25.50 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.49 Total: -1.62 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.76 -10.62 -37.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240347245.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.469 kcal (2) G-P(sol) polarization free energy of solvation -26.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds