Wall clock time and date at job start Tue Mar 31 2020 07:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.70633 * 124.76090 * 2 1 4 4 C 1.75719 * 91.74234 * 179.97438 * 3 2 1 5 5 C 1.33027 * 109.85821 * 359.97438 * 4 3 2 6 6 C 1.34928 * 124.76624 * 179.97438 * 2 1 3 7 7 C 1.47636 * 122.92131 * 0.29258 * 6 2 1 8 8 N 1.31713 * 119.45941 * 311.05881 * 7 6 2 9 9 C 1.33678 * 121.72646 * 179.97438 * 8 7 6 10 10 C 1.40472 * 120.98060 * 180.02562 * 9 8 7 11 11 C 1.36247 * 119.70711 * 179.97438 * 10 9 8 12 12 C 1.39162 * 121.75187 * 359.97438 * 11 10 9 13 13 C 1.36119 * 121.46608 * 0.02562 * 12 11 10 14 14 C 1.40785 * 119.47298 * 0.02562 * 13 12 11 15 15 C 1.40023 * 121.38538 * 180.02562 * 14 13 12 16 16 C 1.40345 * 117.99078 * 179.67770 * 15 14 13 17 17 C 1.40788 * 120.41273 * 180.27972 * 16 15 14 18 18 H 1.07998 * 119.99751 * 149.03764 * 17 16 15 19 19 C 1.40064 * 120.00322 * 329.02861 * 17 16 15 20 20 N 1.30778 * 120.00371 * 348.30047 * 19 17 16 21 21 Si 1.86803 * 120.00003 * 168.28997 * 19 17 16 22 22 H 1.48504 * 109.47257 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47148 * 120.00365 * 21 19 17 24 24 H 1.48498 * 109.47250 * 240.00504 * 21 19 17 25 25 H 1.08996 * 109.47129 * 270.02330 * 1 2 3 26 26 H 1.09000 * 109.47206 * 30.02273 * 1 2 3 27 27 H 1.08998 * 109.47029 * 150.02218 * 1 2 3 28 28 H 1.07999 * 125.06513 * 180.02562 * 4 3 2 29 29 H 1.08006 * 123.11342 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.14712 * 0.02562 * 10 9 8 31 31 H 1.08004 * 119.12094 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.26577 * 179.97438 * 12 11 10 33 33 H 1.08000 * 120.26233 * 179.97438 * 13 12 11 34 34 H 1.08001 * 121.00610 * 359.96239 * 15 14 13 35 35 H 0.96998 * 120.00663 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4798 1.4018 0.0000 4 6 3.9532 0.4443 0.0008 5 6 3.6504 -0.8510 0.0016 6 6 2.2764 -1.1084 0.0005 7 6 1.7159 -2.4742 -0.0052 8 7 0.7694 -2.7896 0.8548 9 6 0.2297 -4.0121 0.8891 10 6 -0.7794 -4.3314 1.8127 11 6 -1.3117 -5.5855 1.8245 12 6 -0.8833 -6.5713 0.9405 13 6 0.0904 -6.3269 0.0213 14 6 0.6806 -5.0502 -0.0399 15 6 1.6849 -4.7549 -0.9697 16 6 2.2188 -3.4569 -0.9728 17 6 3.2265 -3.1029 -1.8900 18 1 3.2939 -2.0880 -2.2530 19 6 4.1418 -4.0668 -2.3314 20 7 4.2109 -5.2265 -1.7309 21 14 5.2638 -3.6961 -3.7782 22 1 4.9905 -2.3245 -4.2778 23 1 6.6804 -3.7908 -3.3431 24 1 5.0126 -4.6778 -4.8637 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 4.9552 0.8474 0.0014 29 1 4.3969 -1.6315 0.0017 30 1 -1.1323 -3.5858 2.5098 31 1 -2.0868 -5.8208 2.5389 32 1 -1.3329 -7.5522 0.9854 33 1 0.4084 -7.1065 -0.6551 34 1 2.0349 -5.5020 -1.6667 35 1 4.8445 -5.8942 -2.0368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240500990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:39 Heat of formation + Delta-G solvation = 64.042559 kcal Electronic energy + Delta-G solvation = -20486.403073 eV Core-core repulsion = 17539.796850 eV Total energy + Delta-G solvation = -2946.606222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.15766 -37.64459 -35.45704 -34.17375 -31.77835 -31.38564 -29.73856 -28.96668 -26.21302 -25.49201 -23.38583 -21.86768 -21.59019 -20.53485 -18.74938 -17.76357 -16.63121 -16.16674 -16.07485 -15.34793 -14.82972 -14.00644 -13.69629 -13.38009 -13.32422 -13.06311 -12.65952 -12.59567 -12.36307 -11.93616 -11.85467 -11.68424 -11.55959 -11.36453 -11.13481 -11.01751 -10.80876 -10.66102 -10.46149 -10.31528 -9.89988 -9.58786 -9.01804 -8.36458 -8.09352 -7.94214 -7.29249 -7.12770 -6.96483 -4.57720 1.34694 1.73906 2.02811 2.17492 2.54460 2.85245 2.93909 2.99342 3.20940 3.52462 3.73105 3.94808 4.64695 5.21239 5.43341 5.49948 5.62907 5.66962 5.71916 5.76990 6.01031 6.06069 6.17704 6.24570 6.30941 6.33626 6.48913 6.54454 6.71080 6.83905 6.87682 6.90807 7.02922 7.15982 7.27131 7.34342 7.39271 7.69400 7.75199 7.88693 8.27125 8.45782 8.52844 9.21813 9.89294 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.008045 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.339227 B = 3479.632889 C = 5857.572447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.196 4.196 3 S 0.105 5.895 4 C -0.246 4.246 5 C -0.081 4.081 6 C -0.027 4.027 7 C 0.140 3.860 8 N -0.456 5.456 9 C 0.028 3.972 10 C -0.061 4.061 11 C -0.177 4.177 12 C -0.119 4.119 13 C -0.129 4.129 14 C -0.047 4.047 15 C -0.168 4.168 16 C 0.079 3.921 17 C -0.425 4.425 18 H 0.089 0.911 19 C 0.071 3.929 20 N -0.778 5.778 21 Si 0.911 3.089 22 H -0.256 1.256 23 H -0.271 1.271 24 H -0.270 1.270 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.158 0.842 29 H 0.148 0.852 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 5.110 0.673 5.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.315 4.315 3 S 0.369 5.631 4 C -0.381 4.381 5 C -0.112 4.112 6 C -0.040 4.040 7 C -0.017 4.017 8 N -0.163 5.163 9 C -0.095 4.095 10 C -0.080 4.080 11 C -0.198 4.198 12 C -0.137 4.137 13 C -0.148 4.148 14 C -0.050 4.050 15 C -0.194 4.194 16 C 0.074 3.926 17 C -0.454 4.454 18 H 0.107 0.893 19 C -0.149 4.149 20 N -0.401 5.401 21 Si 0.735 3.265 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.195 1.195 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.175 0.825 29 H 0.166 0.834 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.192 6.974 1.319 7.428 hybrid contribution 1.286 -2.351 -1.189 2.932 sum -0.906 4.622 0.130 4.712 Atomic orbital electron populations 1.20146 0.88085 1.01853 1.02361 1.23887 1.00735 0.96202 1.10650 1.82588 0.96892 1.09486 1.74122 1.25269 1.01035 0.96781 1.15001 1.20322 0.95963 0.96010 0.98878 1.17415 0.91990 0.91523 1.03107 1.20678 0.95367 0.92205 0.93447 1.67511 1.08726 1.18424 1.21613 1.19322 1.00887 0.89421 0.99825 1.20480 0.94823 0.95911 0.96743 1.20261 1.03371 0.94050 1.02107 1.20465 0.98223 0.98264 0.96748 1.20856 0.98175 0.95946 0.99827 1.19717 0.96017 0.93305 0.95913 1.21449 0.98001 0.98386 1.01537 1.19200 0.91505 0.91188 0.90750 1.19599 1.08957 0.97269 1.19550 0.89308 1.26012 0.97845 0.94204 0.96857 1.69767 1.30472 1.05240 1.34632 0.86179 0.79381 0.80309 0.80667 1.17953 1.19599 1.19452 0.91011 0.92710 0.90824 0.82460 0.83431 0.86987 0.87747 0.87893 0.87148 0.85306 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 9.52 36.00 0.34 -0.77 16 2 C -0.20 -3.65 6.31 -35.48 -0.22 -3.87 16 3 S 0.10 1.61 23.04 -107.50 -2.48 -0.86 16 4 C -0.25 -3.99 11.19 28.92 0.32 -3.66 16 5 C -0.08 -1.57 8.41 -40.81 -0.34 -1.91 16 6 C -0.03 -0.57 4.97 -106.66 -0.53 -1.10 16 7 C 0.14 3.34 5.98 -80.63 -0.48 2.86 16 8 N -0.46 -10.84 9.24 -4.86 -0.04 -10.89 16 9 C 0.03 0.66 6.75 -82.93 -0.56 0.10 16 10 C -0.06 -1.23 9.98 -39.46 -0.39 -1.63 16 11 C -0.18 -3.24 9.90 -39.95 -0.40 -3.63 16 12 C -0.12 -2.18 9.91 -40.00 -0.40 -2.58 16 13 C -0.13 -2.68 9.80 -39.38 -0.39 -3.06 16 14 C -0.05 -1.12 5.87 -104.98 -0.62 -1.73 16 15 C -0.17 -4.21 8.49 -38.12 -0.32 -4.54 16 16 C 0.08 1.97 5.66 -104.69 -0.59 1.38 16 17 C -0.42 -10.17 7.23 -37.93 -0.27 -10.44 16 18 H 0.09 2.08 6.91 -52.49 -0.36 1.72 16 19 C 0.07 1.62 5.23 -17.32 -0.09 1.53 16 20 N -0.78 -18.47 11.06 55.55 0.61 -17.85 16 21 Si 0.91 17.19 29.58 -169.99 -5.03 12.16 16 22 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 23 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 24 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.39 7.31 -51.93 -0.38 1.01 16 28 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.15 2.95 7.56 -52.48 -0.40 2.55 16 30 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 32 H 0.10 1.57 8.06 -52.48 -0.42 1.14 16 33 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.13 3.28 6.50 -52.49 -0.34 2.93 16 35 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -26.35 312.60 -10.74 -37.09 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.57 Total: 8.71 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: -4.94 Total: -33.07 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: 0.57 Total: -28.74 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.48 Total: -0.86 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.35 -10.74 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240500990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.134 kcal (2) G-P(sol) polarization free energy of solvation -26.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds