Wall clock time and date at job start Tue Mar 31 2020 07:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.70633 * 124.76090 * 2 1 4 4 C 1.75719 * 91.74234 * 179.97438 * 3 2 1 5 5 C 1.33027 * 109.85821 * 359.97438 * 4 3 2 6 6 C 1.34928 * 124.76624 * 179.97438 * 2 1 3 7 7 C 1.47636 * 122.92131 * 0.29258 * 6 2 1 8 8 N 1.31713 * 119.45941 * 311.05881 * 7 6 2 9 9 C 1.33678 * 121.72646 * 179.97438 * 8 7 6 10 10 C 1.40472 * 120.98060 * 180.02562 * 9 8 7 11 11 C 1.36247 * 119.70711 * 179.97438 * 10 9 8 12 12 C 1.39162 * 121.75187 * 359.97438 * 11 10 9 13 13 C 1.36119 * 121.46608 * 0.02562 * 12 11 10 14 14 C 1.40785 * 119.47298 * 0.02562 * 13 12 11 15 15 C 1.40023 * 121.38538 * 180.02562 * 14 13 12 16 16 C 1.40345 * 117.99078 * 179.67770 * 15 14 13 17 17 C 1.40788 * 120.41273 * 180.27972 * 16 15 14 18 18 H 1.07998 * 119.99751 * 149.03764 * 17 16 15 19 19 C 1.40064 * 120.00322 * 329.02861 * 17 16 15 20 20 N 1.30778 * 120.00371 * 348.30047 * 19 17 16 21 21 Si 1.86803 * 120.00003 * 168.28997 * 19 17 16 22 22 H 1.48504 * 109.47257 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47148 * 120.00365 * 21 19 17 24 24 H 1.48498 * 109.47250 * 240.00504 * 21 19 17 25 25 H 1.08996 * 109.47129 * 270.02330 * 1 2 3 26 26 H 1.09000 * 109.47206 * 30.02273 * 1 2 3 27 27 H 1.08998 * 109.47029 * 150.02218 * 1 2 3 28 28 H 1.07999 * 125.06513 * 180.02562 * 4 3 2 29 29 H 1.08006 * 123.11342 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.14712 * 0.02562 * 10 9 8 31 31 H 1.08004 * 119.12094 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.26577 * 179.97438 * 12 11 10 33 33 H 1.08000 * 120.26233 * 179.97438 * 13 12 11 34 34 H 1.08001 * 121.00610 * 359.96239 * 15 14 13 35 35 H 0.96998 * 120.00663 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4798 1.4018 0.0000 4 6 3.9532 0.4443 0.0008 5 6 3.6504 -0.8510 0.0016 6 6 2.2764 -1.1084 0.0005 7 6 1.7159 -2.4742 -0.0052 8 7 0.7694 -2.7896 0.8548 9 6 0.2297 -4.0121 0.8891 10 6 -0.7794 -4.3314 1.8127 11 6 -1.3117 -5.5855 1.8245 12 6 -0.8833 -6.5713 0.9405 13 6 0.0904 -6.3269 0.0213 14 6 0.6806 -5.0502 -0.0399 15 6 1.6849 -4.7549 -0.9697 16 6 2.2188 -3.4569 -0.9728 17 6 3.2265 -3.1029 -1.8900 18 1 3.2939 -2.0880 -2.2530 19 6 4.1418 -4.0668 -2.3314 20 7 4.2109 -5.2265 -1.7309 21 14 5.2638 -3.6961 -3.7782 22 1 4.9905 -2.3245 -4.2778 23 1 6.6804 -3.7908 -3.3431 24 1 5.0126 -4.6778 -4.8637 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 4.9552 0.8474 0.0014 29 1 4.3969 -1.6315 0.0017 30 1 -1.1323 -3.5858 2.5098 31 1 -2.0868 -5.8208 2.5389 32 1 -1.3329 -7.5522 0.9854 33 1 0.4084 -7.1065 -0.6551 34 1 2.0349 -5.5020 -1.6667 35 1 4.8445 -5.8942 -2.0368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240500990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:38 Heat of formation + Delta-G solvation = 52.515369 kcal Electronic energy + Delta-G solvation = -20486.902929 eV Core-core repulsion = 17539.796850 eV Total energy + Delta-G solvation = -2947.106079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81689 -39.14092 -37.07104 -35.89085 -33.46234 -32.80333 -31.41933 -30.59855 -27.76029 -27.14517 -24.90974 -23.56965 -23.07403 -22.22331 -20.29847 -19.44144 -18.12549 -17.79315 -17.57100 -16.96346 -16.39774 -15.55261 -15.21909 -14.97128 -14.88638 -14.57551 -14.27816 -14.08263 -13.85482 -13.54914 -13.42926 -13.23967 -13.03363 -12.91637 -12.74023 -12.44976 -12.30805 -12.19424 -12.02743 -11.76622 -11.53132 -11.28846 -10.74294 -10.10334 -9.55627 -9.33729 -8.99097 -8.78203 -8.60490 -6.38294 -0.23880 0.20080 0.40026 0.85588 1.16026 1.32456 1.36873 1.51325 1.59359 1.88385 2.14622 2.32665 2.93986 3.60831 3.76349 4.01103 4.07053 4.26249 4.29097 4.41091 4.55534 4.60021 4.62104 4.67792 4.73688 4.85170 4.95481 5.09043 5.15471 5.18178 5.31450 5.36733 5.47320 5.57470 5.66448 5.74566 5.80048 5.93768 5.98673 6.24200 6.49093 6.68493 6.75017 7.44564 8.21125 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.008045 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.339227 B = 3479.632889 C = 5857.572447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.215 4.215 3 S 0.194 5.806 4 C -0.234 4.234 5 C -0.113 4.113 6 C -0.062 4.062 7 C 0.130 3.870 8 N -0.466 5.466 9 C 0.000 4.000 10 C -0.076 4.076 11 C -0.160 4.160 12 C -0.104 4.104 13 C -0.151 4.151 14 C -0.071 4.071 15 C -0.197 4.197 16 C 0.051 3.949 17 C -0.442 4.442 18 H 0.085 0.915 19 C 0.035 3.965 20 N -0.812 5.812 21 Si 0.980 3.020 22 H -0.254 1.254 23 H -0.262 1.262 24 H -0.265 1.265 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.044 0.956 28 H 0.192 0.808 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 6.446 1.222 6.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.334 4.334 3 S 0.459 5.541 4 C -0.368 4.368 5 C -0.143 4.143 6 C -0.076 4.076 7 C -0.028 4.028 8 N -0.173 5.173 9 C -0.122 4.122 10 C -0.095 4.095 11 C -0.180 4.180 12 C -0.122 4.122 13 C -0.170 4.170 14 C -0.073 4.073 15 C -0.223 4.223 16 C 0.046 3.954 17 C -0.470 4.470 18 H 0.104 0.896 19 C -0.182 4.182 20 N -0.437 5.437 21 Si 0.801 3.199 22 H -0.177 1.177 23 H -0.187 1.187 24 H -0.190 1.190 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.209 0.791 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.878 8.305 1.884 8.990 hybrid contribution 1.341 -2.744 -1.216 3.288 sum -1.537 5.561 0.667 5.808 Atomic orbital electron populations 1.20132 0.87356 1.01921 1.02605 1.24249 1.01907 0.97578 1.09661 1.82211 0.94263 1.05960 1.71667 1.25709 1.03420 0.95878 1.11824 1.20155 0.94978 0.97072 1.02080 1.17524 0.93153 0.90972 1.05935 1.21101 0.95168 0.93563 0.92949 1.67577 1.09155 1.18756 1.21806 1.19895 1.02021 0.89485 1.00768 1.20773 0.94449 0.97604 0.96671 1.20794 1.02834 0.92706 1.01691 1.20957 0.96364 1.00138 0.94759 1.21060 0.99421 0.95066 1.01414 1.20030 0.96263 0.94987 0.96053 1.21391 0.99643 0.98562 1.02702 1.19559 0.92345 0.91797 0.91722 1.19664 1.09564 0.97491 1.20315 0.89648 1.26818 0.98835 0.93680 0.98891 1.69834 1.31533 1.06254 1.36063 0.85158 0.77557 0.80047 0.77186 1.17684 1.18691 1.19016 0.90616 0.89653 0.93690 0.79083 0.85512 0.85311 0.83311 0.83633 0.86388 0.86976 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.07 9.52 71.23 0.68 -1.39 16 2 C -0.21 -7.91 6.31 24.92 0.16 -7.75 16 3 S 0.19 5.43 23.04 -56.49 -1.30 4.13 16 4 C -0.23 -7.15 11.19 66.66 0.75 -6.40 16 5 C -0.11 -4.46 8.41 21.48 0.18 -4.28 16 6 C -0.06 -2.72 4.97 -21.18 -0.11 -2.82 16 7 C 0.13 6.57 5.98 43.88 0.26 6.83 16 8 N -0.47 -23.21 9.24 -169.28 -1.56 -24.77 16 9 C 0.00 0.01 6.75 41.54 0.28 0.29 16 10 C -0.08 -3.04 9.98 22.35 0.22 -2.82 16 11 C -0.16 -5.37 9.90 22.03 0.22 -5.15 16 12 C -0.10 -3.58 9.91 22.00 0.22 -3.36 16 13 C -0.15 -6.31 9.80 22.40 0.22 -6.09 16 14 C -0.07 -3.55 5.87 -20.09 -0.12 -3.66 16 15 C -0.20 -10.65 8.49 23.22 0.20 -10.46 16 16 C 0.05 2.74 5.66 -19.91 -0.11 2.63 16 17 C -0.44 -22.50 7.23 23.34 0.17 -22.34 16 18 H 0.09 4.25 6.91 -2.91 -0.02 4.23 16 19 C 0.03 1.65 5.23 85.29 0.45 2.09 16 20 N -0.81 -40.86 11.06 21.85 0.24 -40.62 16 21 Si 0.98 36.22 29.58 68.60 2.03 38.25 16 22 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 23 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 24 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 25 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 27 H 0.04 1.76 7.31 -2.39 -0.02 1.74 16 28 H 0.19 4.41 8.06 -2.91 -0.02 4.39 16 29 H 0.13 5.43 7.56 -2.91 -0.02 5.40 16 30 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 31 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 32 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.11 6.22 6.50 -2.91 -0.02 6.20 16 35 H 0.29 13.23 8.29 -92.71 -0.77 12.46 16 Total: -1.00 -62.03 312.60 4.18 -57.85 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 1.12 Total: 29.85 kcal Atomic # 6 Polarization: -68.34 SS G_CDS: 3.66 Total: -64.68 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -1.32 Total: -65.39 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.30 Total: 4.13 kcal Total: -62.03 4.18 -57.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240500990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.361 kcal (2) G-P(sol) polarization free energy of solvation -62.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds