Wall clock time and date at job start Tue Mar 31 2020 07:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33029 * 123.11595 * 2 1 4 4 S 1.75709 * 109.85803 * 179.97438 * 3 2 1 5 5 C 1.70630 * 91.74369 * 359.82374 * 4 3 2 6 6 C 1.34929 * 110.47245 * 0.30810 * 5 4 3 7 7 C 1.47632 * 122.92182 * 179.89730 * 6 5 4 8 8 N 1.31718 * 119.46207 * 129.92344 * 7 6 5 9 9 C 1.33678 * 121.72751 * 179.97438 * 8 7 6 10 10 C 1.40473 * 120.98280 * 179.97438 * 9 8 7 11 11 C 1.36242 * 119.70894 * 180.02562 * 10 9 8 12 12 C 1.39163 * 121.75615 * 359.97438 * 11 10 9 13 13 C 1.36126 * 121.46290 * 0.02984 * 12 11 10 14 14 C 1.40794 * 119.46872 * 359.72073 * 13 12 11 15 15 C 1.40024 * 121.37995 * 179.66171 * 14 13 12 16 16 C 1.40343 * 117.99335 * 180.29627 * 15 14 13 17 17 C 1.40791 * 120.41514 * 180.29376 * 16 15 14 18 18 H 1.07997 * 120.00088 * 153.52471 * 17 16 15 19 19 C 1.40067 * 119.99777 * 333.51987 * 17 16 15 20 20 N 1.30780 * 120.00748 * 344.51302 * 19 17 16 21 21 Si 1.86803 * 119.99803 * 164.51263 * 19 17 16 22 22 H 1.48500 * 109.46954 * 59.99869 * 21 19 17 23 23 H 1.48497 * 109.47298 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47048 * 300.00061 * 21 19 17 25 25 H 1.09004 * 109.47241 * 270.02564 * 1 2 3 26 26 H 1.09002 * 109.46784 * 30.02372 * 1 2 3 27 27 H 1.09001 * 109.47435 * 150.02467 * 1 2 3 28 28 H 1.07996 * 125.07026 * 359.95760 * 3 2 1 29 29 H 1.08004 * 124.76440 * 180.19240 * 5 4 3 30 30 H 1.07995 * 120.14438 * 0.04713 * 10 9 8 31 31 H 1.08004 * 119.12602 * 180.02562 * 11 10 9 32 32 H 1.08002 * 119.27339 * 180.02562 * 12 11 10 33 33 H 1.07994 * 120.26899 * 179.97438 * 13 12 11 34 34 H 1.08005 * 121.00671 * 0.56527 * 15 14 13 35 35 H 0.96992 * 120.00473 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2338 1.1142 0.0000 4 16 3.9441 0.7112 0.0007 5 6 3.6035 -0.9607 0.0063 6 6 2.2707 -1.1708 0.0006 7 6 1.6711 -2.5199 0.0012 8 7 0.7313 -2.8108 0.8771 9 6 0.1573 -4.0173 0.9177 10 6 -0.8433 -4.3108 1.8589 11 6 -1.4105 -5.5494 1.8775 12 6 -1.0264 -6.5443 0.9835 13 6 -0.0631 -6.3248 0.0472 14 6 0.5571 -5.0630 -0.0259 15 6 1.5574 -4.7957 -0.9686 16 6 2.1319 -3.5152 -0.9744 17 6 3.1374 -3.1893 -1.9044 18 1 3.2785 -2.1631 -2.2097 19 6 3.9548 -4.1961 -2.4336 20 7 4.0005 -5.3705 -1.8599 21 14 4.9798 -3.8615 -3.9591 22 1 5.9179 -2.7425 -3.6893 23 1 5.7518 -5.0795 -4.3137 24 1 4.0848 -3.4963 -5.0864 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.8325 2.1168 -0.0007 29 1 4.3500 -1.7413 0.0115 30 1 -1.1619 -3.5578 2.5645 31 1 -2.1793 -5.7647 2.6049 32 1 -1.5032 -7.5121 1.0337 33 1 0.2203 -7.1110 -0.6369 34 1 1.8742 -5.5507 -1.6730 35 1 4.5668 -6.0676 -2.2262 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241727763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:15 Heat of formation + Delta-G solvation = 52.463626 kcal Electronic energy + Delta-G solvation = -20479.924819 eV Core-core repulsion = 17532.816496 eV Total energy + Delta-G solvation = -2947.108322 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.82781 -39.28463 -37.21047 -35.88932 -33.42390 -32.39887 -30.89192 -30.60418 -28.15376 -27.40819 -25.16449 -23.71221 -22.78400 -22.30852 -19.90364 -19.32705 -18.46964 -18.02636 -17.63366 -16.65980 -16.35482 -15.56607 -15.20494 -15.02449 -14.77073 -14.56701 -14.31087 -14.03438 -13.79048 -13.57899 -13.44396 -13.13057 -13.02982 -12.87596 -12.69905 -12.60074 -12.33244 -12.15036 -12.01599 -11.77756 -11.54742 -11.29399 -10.74292 -10.10527 -9.60682 -9.34205 -9.01493 -8.80594 -8.61892 -6.38736 -0.22524 0.22850 0.39365 0.90016 1.17806 1.32505 1.36701 1.46198 1.58335 1.85035 2.12026 2.30779 2.93011 3.67915 3.74714 4.02456 4.10319 4.24243 4.28581 4.46958 4.59089 4.62862 4.63903 4.68084 4.74384 4.87022 4.96423 5.05601 5.10987 5.17643 5.30454 5.36790 5.54765 5.57529 5.74154 5.77264 5.79103 5.92831 5.97515 6.25104 6.47502 6.66188 6.73771 7.45231 8.15755 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.007866 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.143253 B = 3558.577453 C = 5810.104407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.098 4.098 3 C -0.233 4.233 4 S 0.192 5.808 5 C -0.236 4.236 6 C -0.053 4.053 7 C 0.126 3.874 8 N -0.462 5.462 9 C -0.005 4.005 10 C -0.074 4.074 11 C -0.163 4.163 12 C -0.103 4.103 13 C -0.153 4.153 14 C -0.068 4.068 15 C -0.207 4.207 16 C 0.050 3.950 17 C -0.442 4.442 18 H 0.088 0.912 19 C 0.035 3.965 20 N -0.805 5.805 21 Si 0.978 3.022 22 H -0.252 1.252 23 H -0.266 1.266 24 H -0.259 1.259 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.034 0.966 28 H 0.196 0.804 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 6.654 1.139 7.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C -0.368 4.368 4 S 0.459 5.541 5 C -0.374 4.374 6 C -0.067 4.067 7 C -0.032 4.032 8 N -0.169 5.169 9 C -0.126 4.126 10 C -0.093 4.093 11 C -0.183 4.183 12 C -0.121 4.121 13 C -0.172 4.172 14 C -0.071 4.071 15 C -0.233 4.233 16 C 0.045 3.955 17 C -0.470 4.470 18 H 0.106 0.894 19 C -0.183 4.183 20 N -0.429 5.429 21 Si 0.798 3.202 22 H -0.176 1.176 23 H -0.190 1.190 24 H -0.184 1.184 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.053 0.947 28 H 0.213 0.787 29 H 0.166 0.834 30 H 0.147 0.853 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.857 7.813 1.801 8.063 hybrid contribution -0.329 -2.126 -1.256 2.491 sum -1.186 5.686 0.545 5.834 Atomic orbital electron populations 1.20298 0.89185 1.01599 1.02165 1.19091 0.98053 0.91132 1.02700 1.25589 0.96134 1.02686 1.12381 1.82317 1.05763 0.95230 1.70787 1.25149 0.99404 1.02822 1.10013 1.17515 0.92366 0.91729 1.05095 1.21063 0.95504 0.93605 0.93072 1.67555 1.08230 1.19344 1.21794 1.19878 1.02297 0.89842 1.00616 1.20769 0.94289 0.97719 0.96514 1.20777 1.02941 0.92872 1.01740 1.20953 0.96491 1.00028 0.94630 1.21050 0.99483 0.95298 1.01368 1.20027 0.96160 0.94964 0.95921 1.21410 0.99932 0.99044 1.02874 1.19557 0.92494 0.91795 0.91664 1.19708 1.12155 0.95977 1.19193 0.89416 1.26854 0.97676 0.93730 1.00016 1.69833 1.31795 1.04687 1.36547 0.85285 0.78224 0.79442 0.77261 1.17566 1.19013 1.18370 0.91169 0.89494 0.94685 0.78690 0.83380 0.85323 0.83357 0.83684 0.86467 0.86707 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.44 9.40 71.24 0.67 -1.77 16 2 C -0.10 -3.54 5.85 -20.65 -0.12 -3.67 16 3 C -0.23 -6.69 10.96 66.66 0.73 -5.96 16 4 S 0.19 5.56 23.09 -56.49 -1.30 4.25 16 5 C -0.24 -9.38 8.98 67.06 0.60 -8.77 16 6 C -0.05 -2.30 4.96 -21.18 -0.11 -2.41 16 7 C 0.13 6.37 5.92 43.88 0.26 6.63 16 8 N -0.46 -23.11 9.31 -169.28 -1.58 -24.69 16 9 C 0.00 -0.22 6.75 41.54 0.28 0.06 16 10 C -0.07 -2.98 9.98 22.35 0.22 -2.76 16 11 C -0.16 -5.53 9.90 22.03 0.22 -5.31 16 12 C -0.10 -3.57 9.91 22.00 0.22 -3.36 16 13 C -0.15 -6.46 9.80 22.40 0.22 -6.25 16 14 C -0.07 -3.44 5.87 -20.09 -0.12 -3.55 16 15 C -0.21 -11.23 8.53 23.22 0.20 -11.03 16 16 C 0.05 2.70 5.70 -19.90 -0.11 2.59 16 17 C -0.44 -22.53 7.46 23.34 0.17 -22.35 16 18 H 0.09 4.32 6.70 -2.91 -0.02 4.31 16 19 C 0.04 1.67 5.19 85.29 0.44 2.11 16 20 N -0.80 -40.32 10.97 21.85 0.24 -40.08 16 21 Si 0.98 36.00 29.59 68.60 2.03 38.03 16 22 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 23 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 25 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 26 H 0.09 2.24 8.13 -2.39 -0.02 2.22 16 27 H 0.03 1.36 7.29 -2.39 -0.02 1.35 16 28 H 0.20 4.00 8.06 -2.91 -0.02 3.97 16 29 H 0.15 6.34 7.64 -2.91 -0.02 6.31 16 30 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.12 6.38 6.29 -2.91 -0.02 6.36 16 35 H 0.29 13.28 8.29 -92.71 -0.77 12.51 16 Total: -1.00 -62.05 312.20 4.29 -57.76 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 1.12 Total: 30.51 kcal Atomic # 6 Polarization: -69.57 SS G_CDS: 3.78 Total: -65.79 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -1.34 Total: -64.77 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.30 Total: 4.25 kcal Total: -62.05 4.29 -57.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241727763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.224 kcal (2) G-P(sol) polarization free energy of solvation -62.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds