Wall clock time and date at job start Tue Mar 31 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48499 * 109.46917 * 240.00151 * 3 2 1 5 5 H 1.48501 * 109.47074 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47001 * 120.00062 * 3 2 1 7 7 C 1.37884 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99628 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46644 * 180.02562 * 9 7 2 11 11 C 1.38345 * 119.93812 * 269.97597 * 10 9 7 12 12 C 1.38297 * 120.24629 * 179.97438 * 11 10 9 13 13 C 1.38035 * 120.12154 * 359.78081 * 12 11 10 14 14 C 1.39326 * 119.87646 * 0.49667 * 13 12 11 15 15 C 1.48381 * 120.11856 * 179.76727 * 14 13 12 16 16 C 1.39851 * 119.82004 * 179.44819 * 15 14 13 17 17 C 1.36385 * 120.09973 * 180.30115 * 16 15 14 18 18 C 1.39439 * 120.40450 * 359.97197 * 17 16 15 19 19 S 1.76136 * 131.55126 * 180.02562 * 18 17 16 20 20 C 1.70634 * 90.84993 * 180.02562 * 19 18 17 21 21 N 1.27910 * 111.54916 * 359.97438 * 20 19 18 22 22 C 1.34689 * 117.83306 * 0.02562 * 21 20 19 23 23 C 1.38345 * 119.83071 * 359.71802 * 15 14 13 24 24 C 1.37998 * 119.94301 * 90.00345 * 10 9 7 25 25 H 0.96996 * 120.00429 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47440 * 60.00099 * 9 7 2 27 27 H 1.09002 * 109.46836 * 299.99770 * 9 7 2 28 28 H 1.08007 * 119.87640 * 0.02562 * 11 10 9 29 29 H 1.08002 * 119.93874 * 180.02562 * 12 11 10 30 30 H 1.08004 * 120.06373 * 180.23672 * 13 12 11 31 31 H 1.07994 * 119.95487 * 0.25272 * 16 15 14 32 32 H 1.07999 * 119.79749 * 180.02562 * 17 16 15 33 33 H 1.08001 * 124.22654 * 180.02562 * 20 19 18 34 34 H 1.08000 * 119.96282 * 359.72021 * 23 15 14 35 35 H 1.07997 * 120.06003 * 359.97368 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2304 -3.6446 0.0027 11 6 2.6787 -4.1707 -1.1957 12 6 3.5778 -5.2215 -1.2022 13 6 4.0364 -5.7482 -0.0115 14 6 3.5838 -5.2260 1.1984 15 6 4.0693 -5.7915 2.4814 16 6 3.6198 -5.2550 3.6922 17 6 4.0670 -5.7663 4.8748 18 6 4.9734 -6.8259 4.8878 19 16 5.7307 -7.6992 6.2168 20 6 6.5739 -8.6938 5.1161 21 7 6.3028 -8.3884 3.9040 22 6 5.4374 -7.3791 3.6883 23 6 4.9685 -6.8429 2.4737 24 6 2.6779 -4.1671 1.1990 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5576 -0.8879 27 1 0.6247 -2.5563 0.8920 28 1 2.3258 -3.7588 -2.1296 29 1 3.9248 -5.6282 -2.1406 30 1 4.7415 -6.5663 -0.0177 31 1 2.9181 -4.4341 3.6908 32 1 3.7164 -5.3485 5.8070 33 1 7.2512 -9.4833 5.4067 34 1 5.3114 -7.2525 1.5351 35 1 2.3273 -3.7556 2.1339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241867319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:48 Heat of formation + Delta-G solvation = 71.080953 kcal Electronic energy + Delta-G solvation = -19297.783172 eV Core-core repulsion = 16351.482158 eV Total energy + Delta-G solvation = -2946.301015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54929 -38.88054 -36.84998 -33.64538 -32.26777 -31.21792 -30.52282 -28.61832 -27.09349 -25.18205 -23.82424 -22.95554 -22.43823 -20.69088 -19.74515 -18.64200 -16.67159 -16.47372 -16.21796 -15.97165 -14.94493 -14.89714 -14.62704 -14.47353 -13.94179 -13.75957 -13.55868 -12.88149 -12.71579 -12.47002 -12.25815 -11.98651 -11.61978 -11.33505 -11.18303 -11.04033 -10.75407 -10.54490 -10.34420 -10.30693 -9.85915 -9.62478 -9.51064 -9.12207 -8.47018 -8.45572 -8.03546 -7.62387 -6.08867 -4.13108 0.28210 0.73186 1.09218 1.53671 1.95264 2.03196 2.38879 3.29308 3.33673 3.36838 3.63710 3.79562 4.35521 4.47102 4.53031 4.69532 4.95149 5.04496 5.16356 5.25521 5.31618 5.37629 5.50772 5.76861 5.85412 5.91506 6.01088 6.03201 6.14907 6.39968 6.43481 6.62147 6.65403 6.97600 7.07502 7.09936 7.39481 7.43369 7.60619 7.76044 7.86752 8.25976 8.91996 9.51145 11.00968 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.021807 B = 0.003285 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.689006 B = 8520.671755 C = 9328.031400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.033 4.033 11 C -0.113 4.113 12 C -0.122 4.122 13 C -0.132 4.132 14 C -0.065 4.065 15 C -0.008 4.008 16 C -0.088 4.088 17 C -0.071 4.071 18 C -0.183 4.183 19 S 0.083 5.917 20 C 0.061 3.939 21 N -0.462 5.462 22 C 0.078 3.922 23 C -0.065 4.065 24 C -0.104 4.104 25 H 0.263 0.737 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.202 0.798 34 H 0.138 0.862 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.868 -15.701 9.692 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.033 4.033 11 C -0.131 4.131 12 C -0.140 4.140 13 C -0.150 4.150 14 C -0.065 4.065 15 C -0.011 4.011 16 C -0.109 4.109 17 C -0.093 4.093 18 C -0.301 4.301 19 S 0.335 5.665 20 C -0.244 4.244 21 N -0.175 5.175 22 C -0.041 4.041 23 C -0.086 4.086 24 C -0.122 4.122 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.218 0.782 34 H 0.156 0.844 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.001 -15.915 10.354 21.459 hybrid contribution 0.335 1.171 -0.778 1.445 sum 10.336 -14.744 9.576 20.394 Atomic orbital electron populations 1.69939 1.06036 1.27021 1.50234 1.25005 0.94876 0.99256 0.95085 0.86599 0.79550 0.82780 0.78791 1.20136 1.21205 1.20127 1.21015 0.93029 0.89831 1.51379 0.92479 1.18369 0.92514 0.89518 0.98523 1.20650 0.96047 0.94975 0.91658 1.21237 0.97450 0.95898 0.98520 1.20981 0.98340 0.97438 0.97275 1.20955 1.01289 1.00883 0.91901 1.18570 0.99268 0.97724 0.90938 1.18684 0.95066 0.94139 0.93206 1.21143 0.99280 0.99630 0.90822 1.19999 0.95922 0.94349 0.99071 1.23819 1.06191 1.04365 0.95767 1.83906 1.42029 1.30257 1.10269 1.28025 1.02728 1.03183 0.90477 1.66203 1.14714 1.14859 1.21691 1.19086 0.96961 0.94232 0.93846 1.20677 0.96642 0.95675 0.95581 1.21145 0.97117 0.95247 0.98732 0.92721 0.95169 0.95243 0.86175 0.86644 0.86707 0.83797 0.84988 0.78160 0.84421 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.51 -14.04 9.09 -34.44 -0.31 -14.35 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.05 1.18 5.10 -29.03 -0.15 1.03 16 10 C -0.03 -0.69 5.06 -104.67 -0.53 -1.22 16 11 C -0.11 -2.11 9.69 -39.52 -0.38 -2.49 16 12 C -0.12 -1.94 10.03 -39.63 -0.40 -2.34 16 13 C -0.13 -2.04 9.42 -39.25 -0.37 -2.41 16 14 C -0.06 -1.07 5.88 -104.90 -0.62 -1.69 16 15 C -0.01 -0.12 5.86 -105.08 -0.62 -0.74 16 16 C -0.09 -1.17 9.36 -39.65 -0.37 -1.55 16 17 C -0.07 -0.86 10.00 -39.80 -0.40 -1.25 16 18 C -0.18 -2.32 6.56 -38.47 -0.25 -2.57 16 19 S 0.08 0.78 23.17 -107.50 -2.49 -1.71 16 20 C 0.06 0.58 12.10 51.13 0.62 1.20 16 21 N -0.46 -6.01 10.57 -12.98 -0.14 -6.15 16 22 C 0.08 1.08 6.99 -84.98 -0.59 0.49 16 23 C -0.06 -0.91 9.49 -38.57 -0.37 -1.28 16 24 C -0.10 -1.95 9.07 -39.25 -0.36 -2.30 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 29 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.12 1.48 6.17 -52.48 -0.32 1.16 16 31 H 0.14 1.80 6.18 -52.49 -0.32 1.48 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 1.77 6.15 -52.49 -0.32 1.45 16 35 H 0.12 2.17 6.18 -52.49 -0.32 1.84 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -30.69 316.16 -10.70 -41.40 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.37 Total: 0.58 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -5.19 Total: -29.92 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.60 Total: -31.28 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.49 Total: -1.71 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.69 -10.70 -41.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241867319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.477 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds