Wall clock time and date at job start Tue Mar 31 2020 06:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00036 * 2 1 4 4 H 1.48499 * 109.46917 * 240.00151 * 3 2 1 5 5 H 1.48501 * 109.47074 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47001 * 120.00062 * 3 2 1 7 7 C 1.37884 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99628 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46644 * 180.02562 * 9 7 2 11 11 C 1.38345 * 119.93812 * 269.97597 * 10 9 7 12 12 C 1.38297 * 120.24629 * 179.97438 * 11 10 9 13 13 C 1.38035 * 120.12154 * 359.78081 * 12 11 10 14 14 C 1.39326 * 119.87646 * 0.49667 * 13 12 11 15 15 C 1.48381 * 120.11856 * 179.76727 * 14 13 12 16 16 C 1.39851 * 119.82004 * 179.44819 * 15 14 13 17 17 C 1.36385 * 120.09973 * 180.30115 * 16 15 14 18 18 C 1.39439 * 120.40450 * 359.97197 * 17 16 15 19 19 S 1.76136 * 131.55126 * 180.02562 * 18 17 16 20 20 C 1.70634 * 90.84993 * 180.02562 * 19 18 17 21 21 N 1.27910 * 111.54916 * 359.97438 * 20 19 18 22 22 C 1.34689 * 117.83306 * 0.02562 * 21 20 19 23 23 C 1.38345 * 119.83071 * 359.71802 * 15 14 13 24 24 C 1.37998 * 119.94301 * 90.00345 * 10 9 7 25 25 H 0.96996 * 120.00429 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47440 * 60.00099 * 9 7 2 27 27 H 1.09002 * 109.46836 * 299.99770 * 9 7 2 28 28 H 1.08007 * 119.87640 * 0.02562 * 11 10 9 29 29 H 1.08002 * 119.93874 * 180.02562 * 12 11 10 30 30 H 1.08004 * 120.06373 * 180.23672 * 13 12 11 31 31 H 1.07994 * 119.95487 * 0.25272 * 16 15 14 32 32 H 1.07999 * 119.79749 * 180.02562 * 17 16 15 33 33 H 1.08001 * 124.22654 * 180.02562 * 20 19 18 34 34 H 1.08000 * 119.96282 * 359.72021 * 23 15 14 35 35 H 1.07997 * 120.06003 * 359.97368 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2304 -3.6446 0.0027 11 6 2.6787 -4.1707 -1.1957 12 6 3.5778 -5.2215 -1.2022 13 6 4.0364 -5.7482 -0.0115 14 6 3.5838 -5.2260 1.1984 15 6 4.0693 -5.7915 2.4814 16 6 3.6198 -5.2550 3.6922 17 6 4.0670 -5.7663 4.8748 18 6 4.9734 -6.8259 4.8878 19 16 5.7307 -7.6992 6.2168 20 6 6.5739 -8.6938 5.1161 21 7 6.3028 -8.3884 3.9040 22 6 5.4374 -7.3791 3.6883 23 6 4.9685 -6.8429 2.4737 24 6 2.6779 -4.1671 1.1990 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5576 -0.8879 27 1 0.6247 -2.5563 0.8920 28 1 2.3258 -3.7588 -2.1296 29 1 3.9248 -5.6282 -2.1406 30 1 4.7415 -6.5663 -0.0177 31 1 2.9181 -4.4341 3.6908 32 1 3.7164 -5.3485 5.8070 33 1 7.2512 -9.4833 5.4067 34 1 5.3114 -7.2525 1.5351 35 1 2.3273 -3.7556 2.1339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241867319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:47 Heat of formation + Delta-G solvation = 55.621686 kcal Electronic energy + Delta-G solvation = -19298.453536 eV Core-core repulsion = 16351.482158 eV Total energy + Delta-G solvation = -2946.971379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52088 -40.16037 -37.89075 -35.50531 -33.68783 -32.68861 -31.61497 -29.78930 -28.85554 -26.12009 -25.39710 -24.32456 -23.62870 -21.88118 -21.06349 -19.55246 -18.51111 -17.70265 -17.51484 -16.99628 -16.52959 -16.01389 -15.81528 -15.77021 -15.06634 -14.91256 -14.56567 -14.53311 -14.13158 -13.78900 -13.62337 -13.34573 -13.11088 -12.86377 -12.67448 -12.56770 -12.29671 -12.13215 -11.72675 -11.62033 -11.32690 -11.22189 -10.68570 -10.60575 -10.17973 -9.53978 -9.42238 -8.77240 -8.20695 -6.33845 -0.62468 -0.35251 0.27478 0.62307 0.71227 0.79516 1.39435 1.41094 1.41987 1.50414 2.38928 2.57449 2.95781 3.10327 3.13604 3.53731 3.64576 3.99327 4.03539 4.15940 4.18545 4.28862 4.39368 4.47537 4.63288 4.70693 4.79651 4.94323 5.07631 5.12500 5.21880 5.26699 5.35169 5.38670 5.54722 5.66467 5.71366 5.77017 6.05452 6.10226 6.23634 6.54766 6.78566 7.34759 8.88486 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.021807 B = 0.003285 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.689006 B = 8520.671755 C = 9328.031400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.057 3.943 10 C -0.063 4.063 11 C -0.130 4.130 12 C -0.111 4.111 13 C -0.127 4.127 14 C -0.058 4.058 15 C -0.025 4.025 16 C -0.104 4.104 17 C -0.066 4.066 18 C -0.206 4.206 19 S 0.137 5.863 20 C 0.072 3.928 21 N -0.498 5.498 22 C 0.062 3.938 23 C -0.070 4.070 24 C -0.119 4.119 25 H 0.266 0.734 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.117 0.883 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.156 0.844 33 H 0.244 0.756 34 H 0.147 0.853 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.546 -17.313 11.074 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.020 3.980 10 C -0.063 4.063 11 C -0.148 4.148 12 C -0.129 4.129 13 C -0.145 4.145 14 C -0.058 4.058 15 C -0.028 4.028 16 C -0.125 4.125 17 C -0.088 4.088 18 C -0.325 4.325 19 S 0.391 5.609 20 C -0.232 4.232 21 N -0.211 5.211 22 C -0.057 4.057 23 C -0.091 4.091 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.135 0.865 29 H 0.170 0.830 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.174 0.826 33 H 0.259 0.741 34 H 0.164 0.836 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.684 -17.538 11.749 24.628 hybrid contribution -0.402 1.476 -1.030 1.844 sum 12.283 -16.063 10.719 22.886 Atomic orbital electron populations 1.70063 1.07616 1.28033 1.51176 1.25895 0.95735 1.02989 0.94567 0.85531 0.78336 0.78247 0.79157 1.19334 1.20540 1.19296 1.21340 0.93042 0.91236 1.51121 0.92814 1.18098 0.92852 0.91039 0.95994 1.20339 0.97080 0.95172 0.93680 1.21284 0.98765 0.97298 0.97479 1.21305 0.96628 0.95824 0.99115 1.21379 1.00908 1.01021 0.91161 1.18744 0.97980 0.96530 0.92578 1.18610 0.96316 0.95171 0.92688 1.21215 0.99895 1.00115 0.91253 1.20233 0.95230 0.93913 0.99458 1.24203 1.06349 1.04667 0.97280 1.83769 1.40436 1.28617 1.08068 1.28832 1.01718 1.02981 0.89658 1.66262 1.15884 1.15561 1.23382 1.19287 0.97404 0.94797 0.94188 1.20747 0.96472 0.95454 0.96413 1.21120 0.98256 0.96444 0.97839 0.92532 0.97697 0.97704 0.86513 0.83017 0.83483 0.83994 0.82642 0.74050 0.83591 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.53 -30.14 9.09 25.60 0.23 -29.91 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.06 3.04 5.10 29.10 0.15 3.19 16 10 C -0.06 -2.75 5.06 -19.90 -0.10 -2.85 16 11 C -0.13 -4.97 9.69 22.31 0.22 -4.75 16 12 C -0.11 -3.36 10.03 22.24 0.22 -3.14 16 13 C -0.13 -3.71 9.42 22.48 0.21 -3.50 16 14 C -0.06 -1.92 5.88 -20.04 -0.12 -2.03 16 15 C -0.02 -0.73 5.86 -20.16 -0.12 -0.85 16 16 C -0.10 -2.78 9.36 22.23 0.21 -2.57 16 17 C -0.07 -1.52 10.00 22.13 0.22 -1.30 16 18 C -0.21 -4.81 6.56 22.99 0.15 -4.66 16 19 S 0.14 2.13 23.17 -56.49 -1.31 0.82 16 20 C 0.07 1.11 12.10 130.81 1.58 2.69 16 21 N -0.50 -11.68 10.57 -194.83 -2.06 -13.74 16 22 C 0.06 1.64 6.99 39.76 0.28 1.91 16 23 C -0.07 -1.90 9.49 22.92 0.22 -1.68 16 24 C -0.12 -4.62 9.07 22.48 0.20 -4.42 16 25 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 26 H 0.00 0.27 8.08 -2.39 -0.02 0.25 16 27 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 28 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.15 3.34 6.17 -2.91 -0.02 3.32 16 31 H 0.14 3.73 6.18 -2.91 -0.02 3.71 16 32 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.24 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.15 3.50 6.15 -2.91 -0.02 3.48 16 35 H 0.12 4.55 6.18 -2.91 -0.02 4.53 16 Total: -1.00 -68.86 316.16 4.09 -64.78 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.12 Total: 10.47 kcal Atomic # 6 Polarization: -57.05 SS G_CDS: 4.02 Total: -53.03 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.77 Total: -69.17 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.31 Total: 0.82 kcal Total: -68.86 4.09 -64.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241867319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.398 kcal (2) G-P(sol) polarization free energy of solvation -68.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds