Wall clock time and date at job start Tue Mar 31 2020 07:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36246 * 120.05726 * 2 1 4 4 C 1.39962 * 120.11569 * 180.27376 * 3 2 1 5 5 C 1.47929 * 119.88222 * 179.73215 * 4 3 2 6 6 C 1.40115 * 119.85288 * 359.75545 * 5 4 3 7 7 C 1.36260 * 120.08234 * 179.69830 * 6 5 4 8 8 C 1.39575 * 120.43129 * 0.61267 * 7 6 5 9 9 S 1.76148 * 131.52302 * 179.66060 * 8 7 6 10 10 C 1.70631 * 90.85249 * 180.02562 * 9 8 7 11 11 N 1.27884 * 111.57589 * 359.97438 * 10 9 8 12 12 C 1.34729 * 117.83659 * 0.02562 * 11 10 9 13 13 C 1.38686 * 119.85230 * 180.02562 * 5 4 3 14 14 C 1.39987 * 120.23124 * 359.75915 * 4 3 2 15 15 C 1.36211 * 120.12368 * 359.95581 * 14 4 3 16 16 C 1.40926 * 120.06164 * 179.73371 * 2 1 3 17 17 C 1.41001 * 120.11505 * 359.97438 * 16 2 1 18 18 H 1.08004 * 119.99634 * 334.14780 * 17 16 2 19 19 C 1.39979 * 120.00267 * 154.14059 * 17 16 2 20 20 N 1.30826 * 119.99599 * 334.52246 * 19 17 16 21 21 Si 1.86796 * 120.00067 * 154.52022 * 19 17 16 22 22 H 1.48496 * 109.47047 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.46975 * 299.99902 * 21 19 17 24 24 H 1.48497 * 109.47476 * 60.00160 * 21 19 17 25 25 H 1.08996 * 109.47408 * 270.26619 * 1 2 3 26 26 H 1.09003 * 109.47247 * 30.26676 * 1 2 3 27 27 H 1.09002 * 109.46845 * 150.26494 * 1 2 3 28 28 H 1.07995 * 119.94356 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.96307 * 359.97438 * 6 5 4 30 30 H 1.07994 * 119.78346 * 180.29608 * 7 6 5 31 31 H 1.07999 * 124.21100 * 179.97438 * 10 9 8 32 32 H 1.08005 * 119.97697 * 359.97438 * 13 5 4 33 33 H 1.08006 * 119.94316 * 179.97438 * 14 4 3 34 34 H 1.07995 * 120.06633 * 180.02562 * 15 14 4 35 35 H 0.96992 * 119.99705 * 354.13823 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1792 0.0000 4 6 3.5890 1.1807 -0.0058 5 6 4.3247 2.4640 -0.0118 6 6 3.6172 3.6735 -0.0168 7 6 4.2901 4.8583 -0.0161 8 6 5.6857 4.8788 -0.0232 9 16 6.8340 6.2145 -0.0323 10 6 8.1443 5.1216 -0.0371 11 7 7.7437 3.9071 -0.0318 12 6 6.4152 3.6829 -0.0242 13 6 5.7115 2.4647 -0.0180 14 6 4.2951 -0.0281 -0.0065 15 6 3.6226 -1.2126 -0.0007 16 6 2.2129 -1.2197 0.0057 17 6 1.5117 -2.4429 0.0119 18 1 0.5130 -2.4908 0.4204 19 6 2.1098 -3.5953 -0.5115 20 7 3.0443 -3.4916 -1.4210 21 14 1.5735 -5.2809 0.0889 22 1 2.3546 -6.3289 -0.6158 23 1 1.8128 -5.3848 1.5508 24 1 0.1272 -5.4689 -0.1905 25 1 -0.3634 0.0048 1.0276 26 1 -0.3634 0.8876 -0.5180 27 1 -0.3633 -0.8924 -0.5097 28 1 1.6494 2.1145 0.0004 29 1 2.5372 3.6667 -0.0167 30 1 3.7400 5.7877 -0.0151 31 1 9.1827 5.4185 -0.0438 32 1 6.2516 1.5295 -0.0181 33 1 5.3751 -0.0215 -0.0114 34 1 4.1682 -2.1446 -0.0008 35 1 3.2635 -2.6237 -1.7944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241868733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:35 Heat of formation + Delta-G solvation = 57.218746 kcal Electronic energy + Delta-G solvation = -19640.347866 eV Core-core repulsion = 16693.445741 eV Total energy + Delta-G solvation = -2946.902125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10141 -38.37873 -36.59062 -34.17876 -32.33561 -30.65184 -30.19532 -28.45164 -26.38434 -25.31363 -24.38871 -22.75434 -21.83997 -20.19499 -19.57653 -18.26824 -17.98535 -16.23327 -15.78317 -15.38687 -14.54537 -14.53737 -14.49296 -14.01614 -13.56086 -13.46524 -13.17866 -12.87603 -12.39223 -12.23136 -11.94709 -11.85780 -11.55982 -11.38223 -11.25920 -10.88795 -10.83249 -10.57871 -10.50905 -9.88114 -9.70863 -9.62357 -9.51276 -9.21501 -8.63115 -8.09006 -7.80737 -7.46372 -7.16272 -4.61053 0.62690 1.25715 1.42566 1.85206 2.42391 2.75863 2.79376 3.03878 3.14940 3.24046 3.83737 4.00937 4.14243 4.48807 4.83436 5.18390 5.28626 5.30738 5.47593 5.63367 5.75513 5.91128 6.04923 6.18133 6.26049 6.32957 6.42612 6.48097 6.53535 6.62916 6.77165 6.90900 6.99619 7.04524 7.20846 7.51497 7.56369 7.67636 7.72741 7.80282 7.95168 8.09443 8.50948 8.63198 9.77248 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.031993 B = 0.003328 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.985427 B = 8410.288870 C = 9175.157166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.203 4.203 3 C -0.048 4.048 4 C -0.220 4.220 5 C 0.041 3.959 6 C -0.113 4.113 7 C -0.067 4.067 8 C -0.206 4.206 9 S 0.057 5.943 10 C 0.060 3.940 11 N -0.464 5.464 12 C 0.089 3.911 13 C -0.103 4.103 14 C -0.054 4.054 15 C -0.224 4.224 16 C 0.105 3.895 17 C -0.489 4.489 18 H 0.085 0.915 19 C 0.035 3.965 20 N -0.775 5.775 21 Si 1.065 2.935 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.273 1.273 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.198 0.802 32 H 0.132 0.868 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 11.392 1.748 11.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.204 4.204 3 C -0.066 4.066 4 C -0.221 4.221 5 C 0.038 3.962 6 C -0.134 4.134 7 C -0.090 4.090 8 C -0.324 4.324 9 S 0.308 5.692 10 C -0.245 4.245 11 N -0.176 5.176 12 C -0.029 4.029 13 C -0.124 4.124 14 C -0.073 4.073 15 C -0.243 4.243 16 C 0.102 3.898 17 C -0.515 4.515 18 H 0.103 0.897 19 C -0.190 4.190 20 N -0.396 5.396 21 Si 0.888 3.112 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.198 1.198 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.214 0.786 32 H 0.150 0.850 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.356 10.412 1.537 11.047 hybrid contribution -0.423 0.993 0.130 1.087 sum 2.933 11.405 1.667 11.894 Atomic orbital electron populations 1.20413 0.93146 1.00767 0.99905 1.19385 0.94620 0.92786 1.13585 1.20287 0.92651 0.96227 0.97445 1.17865 0.92451 0.90080 1.21693 1.18745 0.91537 0.93370 0.92551 1.20995 1.00222 0.91140 1.01038 1.19869 0.90116 0.98519 1.00493 1.23583 0.98995 0.95144 1.14691 1.83661 0.98639 1.11069 1.75807 1.27919 1.04121 0.90573 1.01898 1.66197 1.15123 1.21297 1.15017 1.19087 0.86411 0.94032 1.03340 1.20626 0.92900 0.94988 1.03921 1.20479 0.97528 0.92274 0.96997 1.20844 0.94338 0.96707 1.12401 1.17656 0.91686 0.92339 0.88142 1.20778 1.03366 0.93712 1.33677 0.89745 1.27216 0.92711 1.05857 0.93196 1.70452 1.21431 1.32137 1.15612 0.83623 0.77098 0.73150 0.77369 1.19595 1.19711 1.19834 0.93800 0.94105 0.92030 0.88647 0.84969 0.85928 0.78560 0.85043 0.88643 0.87451 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.39 36.01 0.34 -1.30 16 2 C -0.20 -4.53 5.90 -104.32 -0.62 -5.15 16 3 C -0.05 -1.00 8.99 -39.65 -0.36 -1.36 16 4 C -0.22 -4.66 5.90 -104.63 -0.62 -5.27 16 5 C 0.04 0.77 5.86 -105.06 -0.62 0.16 16 6 C -0.11 -1.85 9.36 -39.59 -0.37 -2.22 16 7 C -0.07 -1.00 9.99 -39.79 -0.40 -1.40 16 8 C -0.21 -3.27 6.56 -38.39 -0.25 -3.52 16 9 S 0.06 0.69 23.17 -107.50 -2.49 -1.80 16 10 C 0.06 0.76 12.10 51.12 0.62 1.38 16 11 N -0.46 -7.66 10.57 -13.00 -0.14 -7.80 16 12 C 0.09 1.59 6.99 -84.98 -0.59 0.99 16 13 C -0.10 -1.93 9.49 -38.49 -0.37 -2.30 16 14 C -0.05 -1.21 9.35 -39.66 -0.37 -1.58 16 15 C -0.22 -5.40 7.89 -39.28 -0.31 -5.71 16 16 C 0.11 2.57 5.30 -106.80 -0.57 2.01 16 17 C -0.49 -11.83 8.03 -37.88 -0.30 -12.13 16 18 H 0.08 1.96 6.92 -52.48 -0.36 1.60 16 19 C 0.03 0.81 4.93 -17.33 -0.09 0.72 16 20 N -0.77 -19.21 12.31 55.55 0.68 -18.52 16 21 Si 1.07 19.87 30.00 -169.99 -5.10 14.77 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 24 H -0.27 -4.81 7.11 56.52 0.40 -4.40 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.06 1.21 6.77 -51.93 -0.35 0.86 16 28 H 0.10 1.72 6.15 -52.49 -0.32 1.40 16 29 H 0.13 1.92 6.15 -52.48 -0.32 1.60 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.13 2.45 6.12 -52.48 -0.32 2.13 16 33 H 0.10 1.95 6.14 -52.48 -0.32 1.63 16 34 H 0.11 2.67 6.49 -52.49 -0.34 2.33 16 35 H 0.30 7.76 6.70 -40.82 -0.27 7.49 16 LS Contribution 307.16 15.07 4.63 4.63 Total: -1.00 -26.79 307.16 -10.38 -37.17 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -3.10 Total: 8.24 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: -4.86 Total: -36.69 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.55 Total: -26.33 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.10 Total: 14.77 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.49 Total: -1.80 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.79 -10.38 -37.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241868733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.389 kcal (2) G-P(sol) polarization free energy of solvation -26.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds