Wall clock time and date at job start Tue Mar 31 2020 07:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36246 * 120.05726 * 2 1 4 4 C 1.39962 * 120.11569 * 180.27376 * 3 2 1 5 5 C 1.47929 * 119.88222 * 179.73215 * 4 3 2 6 6 C 1.40115 * 119.85288 * 359.75545 * 5 4 3 7 7 C 1.36260 * 120.08234 * 179.69830 * 6 5 4 8 8 C 1.39575 * 120.43129 * 0.61267 * 7 6 5 9 9 S 1.76148 * 131.52302 * 179.66060 * 8 7 6 10 10 C 1.70631 * 90.85249 * 180.02562 * 9 8 7 11 11 N 1.27884 * 111.57589 * 359.97438 * 10 9 8 12 12 C 1.34729 * 117.83659 * 0.02562 * 11 10 9 13 13 C 1.38686 * 119.85230 * 180.02562 * 5 4 3 14 14 C 1.39987 * 120.23124 * 359.75915 * 4 3 2 15 15 C 1.36211 * 120.12368 * 359.95581 * 14 4 3 16 16 C 1.40926 * 120.06164 * 179.73371 * 2 1 3 17 17 C 1.41001 * 120.11505 * 359.97438 * 16 2 1 18 18 H 1.08004 * 119.99634 * 334.14780 * 17 16 2 19 19 C 1.39979 * 120.00267 * 154.14059 * 17 16 2 20 20 N 1.30826 * 119.99599 * 334.52246 * 19 17 16 21 21 Si 1.86796 * 120.00067 * 154.52022 * 19 17 16 22 22 H 1.48496 * 109.47047 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.46975 * 299.99902 * 21 19 17 24 24 H 1.48497 * 109.47476 * 60.00160 * 21 19 17 25 25 H 1.08996 * 109.47408 * 270.26619 * 1 2 3 26 26 H 1.09003 * 109.47247 * 30.26676 * 1 2 3 27 27 H 1.09002 * 109.46845 * 150.26494 * 1 2 3 28 28 H 1.07995 * 119.94356 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.96307 * 359.97438 * 6 5 4 30 30 H 1.07994 * 119.78346 * 180.29608 * 7 6 5 31 31 H 1.07999 * 124.21100 * 179.97438 * 10 9 8 32 32 H 1.08005 * 119.97697 * 359.97438 * 13 5 4 33 33 H 1.08006 * 119.94316 * 179.97438 * 14 4 3 34 34 H 1.07995 * 120.06633 * 180.02562 * 15 14 4 35 35 H 0.96992 * 119.99705 * 354.13823 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1792 0.0000 4 6 3.5890 1.1807 -0.0058 5 6 4.3247 2.4640 -0.0118 6 6 3.6172 3.6735 -0.0168 7 6 4.2901 4.8583 -0.0161 8 6 5.6857 4.8788 -0.0232 9 16 6.8340 6.2145 -0.0323 10 6 8.1443 5.1216 -0.0371 11 7 7.7437 3.9071 -0.0318 12 6 6.4152 3.6829 -0.0242 13 6 5.7115 2.4647 -0.0180 14 6 4.2951 -0.0281 -0.0065 15 6 3.6226 -1.2126 -0.0007 16 6 2.2129 -1.2197 0.0057 17 6 1.5117 -2.4429 0.0119 18 1 0.5130 -2.4908 0.4204 19 6 2.1098 -3.5953 -0.5115 20 7 3.0443 -3.4916 -1.4210 21 14 1.5735 -5.2809 0.0889 22 1 2.3546 -6.3289 -0.6158 23 1 1.8128 -5.3848 1.5508 24 1 0.1272 -5.4689 -0.1905 25 1 -0.3634 0.0048 1.0276 26 1 -0.3634 0.8876 -0.5180 27 1 -0.3633 -0.8924 -0.5097 28 1 1.6494 2.1145 0.0004 29 1 2.5372 3.6667 -0.0167 30 1 3.7400 5.7877 -0.0151 31 1 9.1827 5.4185 -0.0438 32 1 6.2516 1.5295 -0.0181 33 1 5.3751 -0.0215 -0.0114 34 1 4.1682 -2.1446 -0.0008 35 1 3.2635 -2.6237 -1.7944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241868733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:33 Heat of formation + Delta-G solvation = 44.961988 kcal Electronic energy + Delta-G solvation = -19640.879359 eV Core-core repulsion = 16693.445741 eV Total energy + Delta-G solvation = -2947.433618 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.36922 -40.00628 -37.93342 -35.83761 -33.91492 -32.23804 -31.52057 -29.97635 -28.00077 -26.80606 -25.70961 -24.14641 -23.35394 -21.71105 -21.13147 -19.73952 -19.40963 -17.52548 -17.12889 -16.85156 -16.06328 -16.03812 -15.75661 -15.48556 -14.97122 -14.81668 -14.64191 -14.39485 -13.94789 -13.72451 -13.49257 -13.31201 -13.02044 -12.87483 -12.73803 -12.38386 -12.33767 -12.00046 -11.88930 -11.37739 -11.29916 -11.15016 -10.87118 -10.64621 -10.02066 -9.55591 -9.38371 -9.20208 -8.71156 -6.42211 -0.53819 -0.14656 0.34973 0.73849 0.96573 0.98991 1.43368 1.50660 1.67137 1.78762 2.29695 2.51215 2.89359 3.06543 3.55494 3.62172 3.93534 4.07671 4.19893 4.26681 4.32558 4.39736 4.55675 4.67215 4.82790 4.88963 4.96587 4.98786 5.13853 5.17274 5.20904 5.23755 5.41915 5.45777 5.65857 5.72043 5.83104 5.96680 6.09102 6.19603 6.33726 6.61250 6.74307 6.88948 7.94878 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.031993 B = 0.003328 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.985427 B = 8410.288870 C = 9175.157166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.215 4.215 3 C -0.055 4.055 4 C -0.209 4.209 5 C 0.018 3.982 6 C -0.115 4.115 7 C -0.058 4.058 8 C -0.225 4.225 9 S 0.138 5.862 10 C 0.069 3.931 11 N -0.510 5.510 12 C 0.070 3.930 13 C -0.120 4.120 14 C -0.070 4.070 15 C -0.244 4.244 16 C 0.077 3.923 17 C -0.525 4.525 18 H 0.087 0.913 19 C 0.001 3.999 20 N -0.806 5.806 21 Si 1.114 2.886 22 H -0.274 1.274 23 H -0.264 1.264 24 H -0.252 1.252 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.131 0.869 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.241 0.759 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.444 15.413 2.281 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.216 4.216 3 C -0.073 4.073 4 C -0.210 4.210 5 C 0.015 3.985 6 C -0.136 4.136 7 C -0.080 4.080 8 C -0.343 4.343 9 S 0.390 5.610 10 C -0.235 4.235 11 N -0.223 5.223 12 C -0.049 4.049 13 C -0.141 4.141 14 C -0.089 4.089 15 C -0.263 4.263 16 C 0.074 3.926 17 C -0.552 4.552 18 H 0.105 0.895 19 C -0.216 4.216 20 N -0.428 5.428 21 Si 0.931 3.069 22 H -0.199 1.199 23 H -0.189 1.189 24 H -0.176 1.176 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.149 0.851 29 H 0.170 0.830 30 H 0.180 0.820 31 H 0.257 0.743 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.225 14.476 2.072 14.975 hybrid contribution -0.084 0.296 -0.012 0.308 sum 3.140 14.772 2.061 15.242 Atomic orbital electron populations 1.20400 0.90886 1.01491 1.00906 1.19856 0.96544 0.92523 1.12690 1.20639 0.92572 0.97232 0.96837 1.18234 0.93135 0.90747 1.18860 1.18718 0.91640 0.93384 0.94764 1.21190 1.01213 0.90523 1.00681 1.20278 0.89958 0.99458 0.98268 1.24125 1.00284 0.96599 1.13282 1.83447 0.95957 1.07848 1.73726 1.28774 1.06543 0.89757 0.98405 1.66242 1.14664 1.23483 1.17949 1.19203 0.87551 0.94313 1.03800 1.20622 0.93244 0.95405 1.04865 1.20658 0.98088 0.92567 0.97568 1.20792 0.94818 0.96516 1.14163 1.17999 0.91906 0.93724 0.88928 1.20884 1.03916 0.94460 1.35917 0.89533 1.28525 0.91850 1.09112 0.92140 1.70562 1.23814 1.30797 1.17674 0.83035 0.77759 0.68997 0.77090 1.19900 1.18906 1.17595 0.92538 0.91416 0.93186 0.85116 0.82968 0.82039 0.74289 0.86681 0.88071 0.89565 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.01 9.39 71.24 0.67 -2.35 16 2 C -0.22 -9.75 5.90 -19.67 -0.12 -9.86 16 3 C -0.05 -2.26 8.99 22.22 0.20 -2.06 16 4 C -0.21 -9.00 5.90 -19.87 -0.12 -9.11 16 5 C 0.02 0.66 5.86 -20.15 -0.12 0.55 16 6 C -0.12 -3.45 9.36 22.26 0.21 -3.25 16 7 C -0.06 -1.49 9.99 22.13 0.22 -1.27 16 8 C -0.22 -6.38 6.56 23.04 0.15 -6.23 16 9 S 0.14 2.69 23.17 -56.49 -1.31 1.38 16 10 C 0.07 1.46 12.10 130.82 1.58 3.05 16 11 N -0.51 -15.94 10.57 -194.86 -2.06 -18.00 16 12 C 0.07 2.39 6.99 39.74 0.28 2.67 16 13 C -0.12 -4.58 9.49 22.97 0.22 -4.37 16 14 C -0.07 -3.34 9.35 22.22 0.21 -3.13 16 15 C -0.24 -12.67 7.89 22.47 0.18 -12.49 16 16 C 0.08 3.99 5.30 -21.28 -0.11 3.88 16 17 C -0.52 -26.76 8.03 23.37 0.19 -26.57 16 18 H 0.09 4.20 6.92 -2.91 -0.02 4.18 16 19 C 0.00 0.07 4.93 85.26 0.42 0.49 16 20 N -0.81 -42.89 12.31 21.83 0.27 -42.62 16 21 Si 1.11 41.51 30.00 68.60 2.06 43.56 16 22 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 24 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.07 2.13 8.08 -2.39 -0.02 2.12 16 27 H 0.05 1.98 6.77 -2.39 -0.02 1.96 16 28 H 0.13 4.36 6.15 -2.91 -0.02 4.34 16 29 H 0.15 3.85 6.15 -2.91 -0.02 3.83 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.24 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.12 4.59 6.12 -2.91 -0.02 4.57 16 33 H 0.10 4.51 6.14 -2.91 -0.02 4.49 16 34 H 0.09 4.73 6.49 -2.91 -0.02 4.71 16 35 H 0.29 15.92 6.70 -92.71 -0.62 15.30 16 Total: -1.00 -63.01 307.16 4.30 -58.70 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 1.29 Total: 27.02 kcal Atomic # 6 Polarization: -74.11 SS G_CDS: 4.06 Total: -70.05 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -1.79 Total: -60.62 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.06 Total: 43.56 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.31 Total: 1.38 kcal Total: -63.01 4.30 -58.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241868733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.665 kcal (2) G-P(sol) polarization free energy of solvation -63.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds