Wall clock time and date at job start Tue Mar 31 2020 07:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36239 * 119.94596 * 2 1 4 4 C 1.40927 * 119.88387 * 180.29576 * 3 2 1 5 5 C 1.41003 * 120.11592 * 179.74407 * 4 3 2 6 6 H 1.08005 * 120.00120 * 204.67712 * 5 4 3 7 7 C 1.39977 * 120.00146 * 24.67024 * 5 4 3 8 8 N 1.30822 * 119.99873 * 17.99460 * 7 5 4 9 9 Si 1.86802 * 120.00236 * 197.98561 * 7 5 4 10 10 H 1.48496 * 109.47059 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46843 * 120.00523 * 9 7 5 12 12 H 1.48498 * 109.47439 * 240.00121 * 9 7 5 13 13 C 1.40965 * 119.76910 * 359.71866 * 4 3 2 14 14 C 1.36202 * 119.87911 * 0.02562 * 13 4 3 15 15 C 1.39964 * 119.93754 * 179.74375 * 2 1 3 16 16 C 1.47919 * 119.88436 * 359.97438 * 15 2 1 17 17 C 1.40125 * 119.85362 * 309.72247 * 16 15 2 18 18 C 1.36248 * 120.08483 * 179.74394 * 17 16 15 19 19 C 1.39576 * 120.43508 * 359.97438 * 18 17 16 20 20 S 1.76152 * 131.52798 * 179.97438 * 19 18 17 21 21 C 1.70625 * 90.85676 * 179.97438 * 20 19 18 22 22 N 1.27882 * 111.57525 * 359.97438 * 21 20 19 23 23 C 1.34726 * 117.83828 * 359.97438 * 22 21 20 24 24 C 1.38689 * 119.85574 * 129.45489 * 16 15 2 25 25 H 1.08997 * 109.46728 * 270.25706 * 1 2 3 26 26 H 1.09001 * 109.46960 * 30.25957 * 1 2 3 27 27 H 1.09001 * 109.47317 * 150.25906 * 1 2 3 28 28 H 1.08007 * 120.05941 * 0.02562 * 3 2 1 29 29 H 0.96998 * 120.00365 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.05837 * 179.97438 * 13 4 3 31 31 H 1.08004 * 119.93853 * 179.97438 * 14 13 4 32 32 H 1.08002 * 119.95742 * 359.73500 * 17 16 15 33 33 H 1.07995 * 119.78858 * 179.97438 * 18 17 16 34 34 H 1.08003 * 124.21270 * 179.97438 * 21 20 19 35 35 H 1.08005 * 119.97329 * 0.24881 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1805 0.0000 4 6 3.5963 1.1790 -0.0063 5 6 4.3051 2.3979 -0.0118 6 1 5.3096 2.4368 -0.4069 7 6 3.7069 3.5577 0.4947 8 7 2.6638 3.4666 1.2789 9 14 4.3983 5.2354 0.0510 10 1 5.5711 5.0665 -0.8440 11 1 3.3558 6.0320 -0.6447 12 1 4.8170 5.9414 1.2885 13 6 4.2949 -0.0454 -0.0066 14 6 3.6054 -1.2200 -0.0013 15 6 2.2055 -1.2129 0.0054 16 6 1.4619 -2.4916 0.0117 17 6 0.4403 -2.6997 0.9479 18 6 -0.2512 -3.8737 0.9545 19 6 0.0499 -4.8768 0.0319 20 16 -0.6411 -6.4774 -0.2201 21 6 0.4326 -6.7653 -1.5146 22 7 1.2060 -5.7667 -1.7150 23 6 1.0647 -4.6912 -0.9159 24 6 1.7753 -3.4770 -0.9125 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8923 -0.5098 28 1 1.6472 2.1159 0.0004 29 1 2.2490 4.2702 1.6296 30 1 5.3749 -0.0520 -0.0118 31 1 4.1397 -2.1586 -0.0019 32 1 0.2007 -1.9287 1.6651 33 1 -1.0374 -4.0292 1.6784 34 1 0.4563 -7.6773 -2.0926 35 1 2.5635 -3.3110 -1.6320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241869417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:22 Heat of formation + Delta-G solvation = 62.825082 kcal Electronic energy + Delta-G solvation = -19766.785792 eV Core-core repulsion = 16820.126776 eV Total energy + Delta-G solvation = -2946.659016 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.14032 -38.21409 -36.40232 -33.99197 -31.85118 -31.33521 -29.82987 -28.67744 -25.99033 -25.49296 -24.54606 -22.73439 -21.35118 -20.39529 -19.54649 -18.18576 -17.22034 -16.33963 -15.78519 -15.32885 -15.08669 -14.59758 -13.99180 -13.89293 -13.64206 -13.48454 -13.21760 -12.73388 -12.53924 -12.00202 -11.85109 -11.70259 -11.54398 -11.33301 -11.18340 -11.08841 -10.88396 -10.51089 -10.38940 -9.93704 -9.72072 -9.59288 -9.50490 -9.28415 -8.44216 -7.97596 -7.48356 -7.23719 -6.92471 -4.47850 0.61891 1.35379 1.39129 1.82222 2.48264 2.69782 2.98381 3.00876 3.04127 3.09331 3.80754 4.00404 4.12806 4.48060 4.83946 5.18048 5.32688 5.45300 5.56276 5.66203 5.86309 5.98699 6.05707 6.18501 6.29278 6.35599 6.36928 6.47246 6.59453 6.76920 6.86122 6.93952 7.01174 7.20168 7.24347 7.51022 7.71257 7.78459 7.92637 8.00720 8.15343 8.48042 8.72411 8.83328 9.98877 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.041412 B = 0.003271 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.969207 B = 8557.086600 C = 8981.401987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.044 4.044 3 C -0.168 4.168 4 C 0.120 3.880 5 C -0.449 4.449 6 H 0.082 0.918 7 C 0.075 3.925 8 N -0.779 5.779 9 Si 0.909 3.091 10 H -0.259 1.259 11 H -0.270 1.270 12 H -0.273 1.273 13 C -0.232 4.232 14 C -0.059 4.059 15 C -0.210 4.210 16 C 0.035 3.965 17 C -0.092 4.092 18 C -0.079 4.079 19 C -0.192 4.192 20 S 0.060 5.940 21 C 0.058 3.942 22 N -0.462 5.462 23 C 0.079 3.921 24 C -0.080 4.080 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.283 0.717 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.198 0.802 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 -11.133 -0.881 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.045 4.045 3 C -0.187 4.187 4 C 0.118 3.882 5 C -0.478 4.478 6 H 0.100 0.900 7 C -0.145 4.145 8 N -0.403 5.403 9 Si 0.733 3.267 10 H -0.182 1.182 11 H -0.195 1.195 12 H -0.198 1.198 13 C -0.251 4.251 14 C -0.077 4.077 15 C -0.212 4.212 16 C 0.032 3.968 17 C -0.113 4.113 18 C -0.101 4.101 19 C -0.310 4.310 20 S 0.312 5.688 21 C -0.248 4.248 22 N -0.174 5.174 23 C -0.039 4.039 24 C -0.102 4.102 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.138 0.862 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.215 0.785 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.168 -11.661 -0.769 13.710 hybrid contribution 0.787 1.394 -0.166 1.610 sum -6.381 -10.267 -0.935 12.125 Atomic orbital electron populations 1.20794 0.93797 1.00982 1.00770 1.19196 0.93698 0.92672 0.98925 1.20852 0.94249 0.96119 1.07494 1.17701 0.92063 0.92117 0.86360 1.19702 1.01419 0.92393 1.34245 0.90035 1.26002 0.94178 1.01771 0.92549 1.69830 1.17845 1.31710 1.20953 0.86234 0.80176 0.80802 0.79458 1.18212 1.19516 1.19819 1.20653 0.97839 0.92500 1.14145 1.20297 0.92521 0.96627 0.98297 1.17787 0.92317 0.89432 1.21629 1.18782 0.93195 0.93134 0.91688 1.21213 0.95460 0.96227 0.98370 1.19923 1.00486 0.92134 0.97589 1.23677 1.03590 0.99119 1.04624 1.83716 1.40281 1.10982 1.33858 1.27914 0.95599 1.01246 1.00037 1.66193 1.24688 1.00099 1.26409 1.19145 0.97248 0.94302 0.93236 1.20826 0.99938 0.89908 0.99497 0.92438 0.92786 0.92860 0.86233 0.90585 0.88763 0.89165 0.84732 0.85819 0.78543 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 8.43 36.01 0.30 -1.64 16 2 C -0.04 -0.98 5.83 -104.69 -0.61 -1.59 16 3 C -0.17 -4.13 8.26 -39.28 -0.32 -4.45 16 4 C 0.12 3.06 5.57 -106.80 -0.60 2.47 16 5 C -0.45 -11.34 9.03 -37.88 -0.34 -11.68 16 6 H 0.08 1.98 7.91 -52.48 -0.42 1.57 16 7 C 0.07 1.77 5.13 -17.33 -0.09 1.69 16 8 N -0.78 -19.01 10.96 55.55 0.61 -18.40 16 9 Si 0.91 17.69 29.60 -169.99 -5.03 12.66 16 10 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 11 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 12 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 13 C -0.23 -5.48 9.73 -39.28 -0.38 -5.87 16 14 C -0.06 -1.29 9.41 -39.66 -0.37 -1.66 16 15 C -0.21 -4.47 5.48 -104.63 -0.57 -5.04 16 16 C 0.03 0.64 4.69 -105.06 -0.49 0.15 16 17 C -0.09 -1.49 7.81 -39.59 -0.31 -1.80 16 18 C -0.08 -1.15 9.99 -39.80 -0.40 -1.54 16 19 C -0.19 -2.94 6.56 -38.39 -0.25 -3.19 16 20 S 0.06 0.70 23.17 -107.50 -2.49 -1.79 16 21 C 0.06 0.69 12.10 51.12 0.62 1.31 16 22 N -0.46 -7.33 10.57 -13.00 -0.14 -7.46 16 23 C 0.08 1.35 6.99 -84.98 -0.59 0.75 16 24 C -0.08 -1.45 9.54 -38.49 -0.37 -1.82 16 25 H 0.06 0.96 7.48 -51.93 -0.39 0.58 16 26 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 27 H 0.05 0.91 6.45 -51.93 -0.33 0.58 16 28 H 0.12 3.03 6.16 -52.48 -0.32 2.71 16 29 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 30 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.09 1.78 8.03 -52.48 -0.42 1.36 16 32 H 0.13 2.07 6.85 -52.49 -0.36 1.71 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.20 1.50 8.06 -52.48 -0.42 1.08 16 35 H 0.13 2.37 8.01 -52.48 -0.42 1.94 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -27.15 311.60 -10.62 -37.77 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.49 Total: 6.46 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: -4.78 Total: -33.93 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.47 Total: -25.86 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.49 Total: -1.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.15 -10.62 -37.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241869417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.595 kcal (2) G-P(sol) polarization free energy of solvation -27.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds