Wall clock time and date at job start Tue Mar 31 2020 07:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36239 * 119.94596 * 2 1 4 4 C 1.40927 * 119.88387 * 180.29576 * 3 2 1 5 5 C 1.41003 * 120.11592 * 179.74407 * 4 3 2 6 6 H 1.08005 * 120.00120 * 204.67712 * 5 4 3 7 7 C 1.39977 * 120.00146 * 24.67024 * 5 4 3 8 8 N 1.30822 * 119.99873 * 17.99460 * 7 5 4 9 9 Si 1.86802 * 120.00236 * 197.98561 * 7 5 4 10 10 H 1.48496 * 109.47059 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46843 * 120.00523 * 9 7 5 12 12 H 1.48498 * 109.47439 * 240.00121 * 9 7 5 13 13 C 1.40965 * 119.76910 * 359.71866 * 4 3 2 14 14 C 1.36202 * 119.87911 * 0.02562 * 13 4 3 15 15 C 1.39964 * 119.93754 * 179.74375 * 2 1 3 16 16 C 1.47919 * 119.88436 * 359.97438 * 15 2 1 17 17 C 1.40125 * 119.85362 * 309.72247 * 16 15 2 18 18 C 1.36248 * 120.08483 * 179.74394 * 17 16 15 19 19 C 1.39576 * 120.43508 * 359.97438 * 18 17 16 20 20 S 1.76152 * 131.52798 * 179.97438 * 19 18 17 21 21 C 1.70625 * 90.85676 * 179.97438 * 20 19 18 22 22 N 1.27882 * 111.57525 * 359.97438 * 21 20 19 23 23 C 1.34726 * 117.83828 * 359.97438 * 22 21 20 24 24 C 1.38689 * 119.85574 * 129.45489 * 16 15 2 25 25 H 1.08997 * 109.46728 * 270.25706 * 1 2 3 26 26 H 1.09001 * 109.46960 * 30.25957 * 1 2 3 27 27 H 1.09001 * 109.47317 * 150.25906 * 1 2 3 28 28 H 1.08007 * 120.05941 * 0.02562 * 3 2 1 29 29 H 0.96998 * 120.00365 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.05837 * 179.97438 * 13 4 3 31 31 H 1.08004 * 119.93853 * 179.97438 * 14 13 4 32 32 H 1.08002 * 119.95742 * 359.73500 * 17 16 15 33 33 H 1.07995 * 119.78858 * 179.97438 * 18 17 16 34 34 H 1.08003 * 124.21270 * 179.97438 * 21 20 19 35 35 H 1.08005 * 119.97329 * 0.24881 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1805 0.0000 4 6 3.5963 1.1790 -0.0063 5 6 4.3051 2.3979 -0.0118 6 1 5.3096 2.4368 -0.4069 7 6 3.7069 3.5577 0.4947 8 7 2.6638 3.4666 1.2789 9 14 4.3983 5.2354 0.0510 10 1 5.5711 5.0665 -0.8440 11 1 3.3558 6.0320 -0.6447 12 1 4.8170 5.9414 1.2885 13 6 4.2949 -0.0454 -0.0066 14 6 3.6054 -1.2200 -0.0013 15 6 2.2055 -1.2129 0.0054 16 6 1.4619 -2.4916 0.0117 17 6 0.4403 -2.6997 0.9479 18 6 -0.2512 -3.8737 0.9545 19 6 0.0499 -4.8768 0.0319 20 16 -0.6411 -6.4774 -0.2201 21 6 0.4326 -6.7653 -1.5146 22 7 1.2060 -5.7667 -1.7150 23 6 1.0647 -4.6912 -0.9159 24 6 1.7753 -3.4770 -0.9125 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8923 -0.5098 28 1 1.6472 2.1159 0.0004 29 1 2.2490 4.2702 1.6296 30 1 5.3749 -0.0520 -0.0118 31 1 4.1397 -2.1586 -0.0019 32 1 0.2007 -1.9287 1.6651 33 1 -1.0374 -4.0292 1.6784 34 1 0.4563 -7.6773 -2.0926 35 1 2.5635 -3.3110 -1.6320 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241869417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:20 Heat of formation + Delta-G solvation = 50.444145 kcal Electronic energy + Delta-G solvation = -19767.322670 eV Core-core repulsion = 16820.126776 eV Total energy + Delta-G solvation = -2947.195894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.36073 -39.82017 -37.75276 -35.69124 -33.52506 -32.79318 -31.16398 -30.22275 -27.64031 -27.08954 -25.71340 -24.15073 -22.73666 -22.01099 -21.12038 -19.32650 -19.03727 -17.60163 -17.17366 -16.81760 -16.46528 -15.84758 -15.53395 -15.45717 -14.94269 -14.82371 -14.55243 -14.31141 -13.98358 -13.64913 -13.38817 -13.22166 -12.93215 -12.79243 -12.70165 -12.66491 -12.37886 -12.02300 -11.87545 -11.45695 -11.33143 -11.13342 -10.88119 -10.62252 -9.74674 -9.29097 -9.25894 -8.81384 -8.65921 -6.34815 -0.49476 0.03228 0.36430 0.76863 0.94104 1.17132 1.38057 1.41863 1.52538 1.54935 2.18773 2.59467 2.81107 3.11253 3.65229 3.71606 3.98815 4.20340 4.31848 4.33400 4.40300 4.42499 4.64297 4.68947 4.86870 4.92288 4.97005 5.10648 5.13902 5.16255 5.20463 5.32454 5.46437 5.59747 5.69051 5.73524 6.04208 6.09650 6.22713 6.34722 6.63535 6.65730 6.88597 7.00681 8.26348 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.041412 B = 0.003271 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.969207 B = 8557.086600 C = 8981.401987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.052 4.052 3 C -0.190 4.190 4 C 0.089 3.911 5 C -0.491 4.491 6 H 0.076 0.924 7 C 0.037 3.963 8 N -0.811 5.811 9 Si 0.982 3.018 10 H -0.260 1.260 11 H -0.263 1.263 12 H -0.264 1.264 13 C -0.251 4.251 14 C -0.067 4.067 15 C -0.200 4.200 16 C 0.017 3.983 17 C -0.100 4.100 18 C -0.065 4.065 19 C -0.213 4.213 20 S 0.135 5.865 21 C 0.069 3.931 22 N -0.505 5.505 23 C 0.065 3.935 24 C -0.095 4.095 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.291 0.709 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.159 0.841 34 H 0.241 0.759 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 -13.592 -0.636 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.052 4.052 3 C -0.210 4.210 4 C 0.087 3.913 5 C -0.519 4.519 6 H 0.094 0.906 7 C -0.179 4.179 8 N -0.436 5.436 9 Si 0.802 3.198 10 H -0.183 1.183 11 H -0.187 1.187 12 H -0.189 1.189 13 C -0.270 4.270 14 C -0.085 4.085 15 C -0.201 4.201 16 C 0.014 3.986 17 C -0.121 4.121 18 C -0.087 4.087 19 C -0.332 4.332 20 S 0.388 5.612 21 C -0.235 4.235 22 N -0.219 5.219 23 C -0.053 4.053 24 C -0.116 4.116 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.159 0.841 33 H 0.176 0.824 34 H 0.257 0.743 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.424 -14.153 -0.518 17.011 hybrid contribution 1.320 1.716 -0.270 2.181 sum -8.104 -12.437 -0.787 14.865 Atomic orbital electron populations 1.20769 0.90999 1.01674 1.02075 1.19604 0.95907 0.92081 0.97619 1.20835 0.94138 0.96573 1.09412 1.18036 0.92905 0.92934 0.87441 1.19884 1.01798 0.93696 1.36544 0.90595 1.26780 0.94389 1.04951 0.91807 1.69864 1.19012 1.33058 1.21677 0.85160 0.79373 0.75958 0.79272 1.18329 1.18701 1.18870 1.20812 0.98169 0.92890 1.15127 1.20550 0.93321 0.96695 0.97965 1.18129 0.92316 0.90821 1.18830 1.18611 0.94497 0.92044 0.93456 1.21228 0.95166 0.97489 0.98206 1.20239 1.00201 0.90899 0.97373 1.24138 1.03462 1.01517 1.04046 1.83527 1.38222 1.07185 1.32244 1.28767 0.93798 1.01338 0.99633 1.66243 1.27021 1.00896 1.27704 1.19223 0.97617 0.94382 0.94118 1.20722 1.00327 0.90918 0.99664 0.90688 0.92567 0.91583 0.87675 0.89802 0.88578 0.87478 0.84106 0.82361 0.74276 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.55 8.43 71.24 0.60 -2.95 16 2 C -0.05 -2.33 5.83 -19.91 -0.12 -2.45 16 3 C -0.19 -9.83 8.26 22.46 0.19 -9.65 16 4 C 0.09 4.83 5.57 -21.27 -0.12 4.71 16 5 C -0.49 -26.28 9.03 23.37 0.21 -26.07 16 6 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 7 C 0.04 1.84 5.13 85.26 0.44 2.28 16 8 N -0.81 -41.12 10.96 21.83 0.24 -40.88 16 9 Si 0.98 37.32 29.60 68.60 2.03 39.35 16 10 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 11 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 12 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 13 C -0.25 -12.55 9.73 22.46 0.22 -12.33 16 14 C -0.07 -3.05 9.41 22.22 0.21 -2.84 16 15 C -0.20 -8.68 5.48 -19.87 -0.11 -8.79 16 16 C 0.02 0.62 4.69 -20.15 -0.09 0.52 16 17 C -0.10 -3.06 7.81 22.26 0.17 -2.89 16 18 C -0.06 -1.68 9.99 22.13 0.22 -1.46 16 19 C -0.21 -5.85 6.56 23.04 0.15 -5.70 16 20 S 0.14 2.53 23.17 -56.49 -1.31 1.23 16 21 C 0.07 1.36 12.10 130.82 1.58 2.95 16 22 N -0.51 -14.90 10.57 -194.86 -2.06 -16.96 16 23 C 0.07 2.12 6.99 39.75 0.28 2.40 16 24 C -0.10 -3.44 9.54 22.98 0.22 -3.23 16 25 H 0.07 2.43 7.48 -2.39 -0.02 2.41 16 26 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 27 H 0.07 2.19 6.45 -2.39 -0.02 2.18 16 28 H 0.11 5.64 6.16 -2.91 -0.02 5.62 16 29 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 30 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 31 H 0.11 4.38 8.03 -2.91 -0.02 4.36 16 32 H 0.14 4.08 6.85 -2.91 -0.02 4.06 16 33 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.24 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.12 4.42 8.01 -2.91 -0.02 4.39 16 Total: -1.00 -62.45 311.60 4.07 -58.37 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 1.12 Total: 24.38 kcal Atomic # 6 Polarization: -69.54 SS G_CDS: 4.05 Total: -65.49 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -1.82 Total: -57.84 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.31 Total: 1.23 kcal Total: -62.45 4.07 -58.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241869417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.819 kcal (2) G-P(sol) polarization free energy of solvation -62.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds