Wall clock time and date at job start Tue Mar 31 2020 07:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36248 * 120.06216 * 2 1 4 4 C 1.39953 * 120.12303 * 179.97438 * 3 2 1 5 5 C 1.47936 * 119.88139 * 180.02562 * 4 3 2 6 6 C 1.40041 * 120.43180 * 359.72384 * 5 4 3 7 7 N 1.31009 * 120.87423 * 179.74496 * 6 5 4 8 8 C 1.33586 * 122.37920 * 0.54316 * 7 6 5 9 9 S 1.76058 * 130.11534 * 179.74579 * 8 7 6 10 10 C 1.75261 * 92.26284 * 179.97438 * 9 8 7 11 11 C 1.31738 * 111.49613 * 359.97438 * 10 9 8 12 12 C 1.40025 * 120.43076 * 359.72272 * 8 7 6 13 13 C 1.39162 * 120.42263 * 179.97438 * 5 4 3 14 14 C 1.39985 * 120.22899 * 0.02562 * 4 3 2 15 15 C 1.36208 * 120.12069 * 0.02562 * 14 4 3 16 16 C 1.40928 * 120.06173 * 179.97438 * 2 1 3 17 17 C 1.41010 * 120.11379 * 359.75340 * 16 2 1 18 18 H 1.08000 * 120.00009 * 333.59907 * 17 16 2 19 19 C 1.39983 * 119.99997 * 153.59478 * 17 16 2 20 20 N 1.30815 * 119.99891 * 344.00285 * 19 17 16 21 21 Si 1.86799 * 119.99845 * 164.00072 * 19 17 16 22 22 H 1.48502 * 109.47082 * 89.99914 * 21 19 17 23 23 H 1.48499 * 109.46782 * 210.00041 * 21 19 17 24 24 H 1.48497 * 109.47013 * 329.99885 * 21 19 17 25 25 H 1.08997 * 109.47375 * 270.02695 * 1 2 3 26 26 H 1.09006 * 109.46998 * 30.03056 * 1 2 3 27 27 H 1.09002 * 109.46940 * 150.02469 * 1 2 3 28 28 H 1.08005 * 119.93972 * 359.96646 * 3 2 1 29 29 H 1.08005 * 119.55774 * 0.02562 * 6 5 4 30 30 H 1.08001 * 124.25416 * 180.02562 * 10 9 8 31 31 H 1.07998 * 122.58654 * 180.02562 * 11 10 9 32 32 H 1.08000 * 120.69289 * 359.95745 * 13 5 4 33 33 H 1.08001 * 119.93729 * 179.97438 * 14 4 3 34 34 H 1.08001 * 120.06288 * 180.02562 * 15 14 4 35 35 H 0.96996 * 119.99684 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1792 0.0000 4 6 3.5890 1.1807 0.0005 5 6 4.3247 2.4642 0.0011 6 6 3.6298 3.6800 -0.0047 7 7 4.2725 4.8216 0.0008 8 6 5.6065 4.8916 0.0013 9 16 6.6688 6.2956 0.0021 10 6 8.1071 5.2941 0.0032 11 6 7.8028 4.0123 0.0035 12 6 6.3780 3.7231 0.0018 13 6 5.7162 2.4788 0.0022 14 6 4.2951 -0.0281 0.0005 15 6 3.6225 -1.2125 -0.0005 16 6 2.2129 -1.2197 0.0005 17 6 1.5116 -2.4430 0.0063 18 1 0.5178 -2.4938 0.4261 19 6 2.1035 -3.5917 -0.5320 20 7 3.1498 -3.4850 -1.3099 21 14 1.3993 -5.2767 -0.1395 22 1 0.3731 -5.6325 -1.1523 23 1 2.4883 -6.2859 -0.1627 24 1 0.7766 -5.2512 1.2083 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6495 2.1146 -0.0005 29 1 2.5498 3.6764 -0.0092 30 1 9.1161 5.6793 0.0044 31 1 8.5539 3.2363 0.0046 32 1 6.2772 1.5559 0.0033 33 1 5.3750 -0.0214 0.0005 34 1 4.1682 -2.1445 -0.0001 35 1 3.5597 -4.2809 -1.6832 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242680183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:30 Heat of formation + Delta-G solvation = 46.583465 kcal Electronic energy + Delta-G solvation = -19583.014997 eV Core-core repulsion = 16635.651692 eV Total energy + Delta-G solvation = -2947.363305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.25935 -39.59042 -36.77383 -35.77405 -34.28474 -32.58317 -31.51071 -30.13939 -28.04186 -26.83128 -24.88738 -24.66352 -22.92310 -21.74614 -20.71354 -19.36441 -19.07673 -17.60998 -17.21908 -16.72863 -16.42423 -15.50566 -15.49289 -15.45096 -15.17342 -14.51424 -14.35538 -14.30242 -13.87521 -13.51743 -13.33120 -13.20936 -12.99388 -12.84351 -12.79401 -12.65593 -12.41183 -12.17983 -11.84710 -11.50887 -11.32865 -11.21063 -10.94144 -10.42225 -9.87281 -9.30942 -9.25626 -8.74589 -8.54517 -6.30331 -0.43432 -0.13921 0.33928 1.01573 1.03439 1.18414 1.33290 1.39777 1.51392 1.57408 2.17839 2.56213 2.94100 3.43675 3.68481 3.73096 3.80643 3.93480 4.21200 4.28991 4.43150 4.53451 4.61949 4.74376 4.82724 4.90393 4.99305 5.05563 5.08145 5.14911 5.28879 5.34715 5.36994 5.46878 5.60499 5.74468 5.98738 6.11952 6.18208 6.33028 6.63366 6.76197 6.87536 7.00105 8.24383 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.032913 B = 0.003298 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.520385 B = 8487.600849 C = 9255.852240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.213 4.213 3 C -0.068 4.068 4 C -0.196 4.196 5 C -0.043 4.043 6 C 0.109 3.891 7 N -0.471 5.471 8 C -0.005 4.005 9 S 0.120 5.880 10 C -0.174 4.174 11 C -0.127 4.127 12 C -0.121 4.121 13 C -0.077 4.077 14 C -0.084 4.084 15 C -0.191 4.191 16 C 0.092 3.908 17 C -0.471 4.471 18 H 0.087 0.913 19 C 0.034 3.966 20 N -0.812 5.812 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.268 1.268 24 H -0.257 1.257 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.122 0.878 29 H 0.175 0.825 30 H 0.212 0.788 31 H 0.172 0.828 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 9.305 1.847 11.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.214 4.214 3 C -0.086 4.086 4 C -0.198 4.198 5 C -0.047 4.047 6 C -0.060 4.060 7 N -0.181 5.181 8 C -0.248 4.248 9 S 0.379 5.621 10 C -0.307 4.307 11 C -0.157 4.157 12 C -0.131 4.131 13 C -0.104 4.104 14 C -0.103 4.103 15 C -0.211 4.211 16 C 0.090 3.910 17 C -0.499 4.499 18 H 0.105 0.895 19 C -0.182 4.182 20 N -0.437 5.437 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.193 1.193 24 H -0.180 1.180 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.192 0.808 30 H 0.228 0.772 31 H 0.190 0.810 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.507 11.575 1.694 13.386 hybrid contribution 0.377 -3.278 -0.064 3.301 sum 6.884 8.296 1.629 10.903 Atomic orbital electron populations 1.20413 0.91204 1.01418 1.00831 1.19869 0.96400 0.92728 1.12449 1.20565 0.92822 0.97049 0.98131 1.18083 0.92898 0.90387 1.18414 1.19736 0.93515 0.94197 0.97290 1.23077 1.00751 0.85895 0.96262 1.67035 1.07724 1.30059 1.13262 1.23986 0.94371 0.98072 1.08328 1.83919 0.94236 1.04875 1.79082 1.25549 1.03312 0.95986 1.05884 1.21034 0.92783 0.98134 1.03743 1.20409 0.95282 0.93512 1.03943 1.21587 0.93415 0.96930 0.98506 1.20686 0.98341 0.92217 0.99047 1.20952 0.94828 0.96722 1.08564 1.17981 0.92383 0.92985 0.87685 1.19944 1.02778 0.93355 1.33814 0.89467 1.26841 0.94314 1.05123 0.91962 1.69864 1.18904 1.33539 1.21402 0.85210 0.78892 0.75699 0.80077 1.18617 1.19254 1.18039 0.92580 0.91865 0.92925 0.86043 0.80767 0.77153 0.81041 0.83672 0.87339 0.87956 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.11 9.39 71.23 0.67 -2.44 16 2 C -0.21 -9.65 5.90 -19.67 -0.12 -9.77 16 3 C -0.07 -2.82 9.00 22.22 0.20 -2.62 16 4 C -0.20 -8.29 5.90 -19.87 -0.12 -8.41 16 5 C -0.04 -1.62 5.88 -20.05 -0.12 -1.74 16 6 C 0.11 3.89 10.59 85.25 0.90 4.79 16 7 N -0.47 -16.96 10.36 -189.94 -1.97 -18.93 16 8 C 0.00 -0.16 7.65 84.86 0.65 0.49 16 9 S 0.12 2.89 23.23 -56.49 -1.31 1.58 16 10 C -0.17 -3.22 11.01 67.10 0.74 -2.48 16 11 C -0.13 -2.86 10.39 23.39 0.24 -2.61 16 12 C -0.12 -3.77 6.05 -20.34 -0.12 -3.90 16 13 C -0.08 -2.64 9.59 23.15 0.22 -2.42 16 14 C -0.08 -3.79 9.36 22.22 0.21 -3.58 16 15 C -0.19 -9.61 8.62 22.46 0.19 -9.42 16 16 C 0.09 4.69 5.56 -21.27 -0.12 4.57 16 17 C -0.47 -23.44 8.09 23.37 0.19 -23.25 16 18 H 0.09 4.12 6.89 -2.91 -0.02 4.10 16 19 C 0.03 1.62 5.16 85.27 0.44 2.06 16 20 N -0.81 -40.12 10.97 21.83 0.24 -39.89 16 21 Si 0.98 35.64 29.59 68.60 2.03 37.67 16 22 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 23 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 24 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.06 2.06 8.08 -2.38 -0.02 2.04 16 27 H 0.05 2.07 6.79 -2.39 -0.02 2.05 16 28 H 0.12 4.28 6.19 -2.91 -0.02 4.26 16 29 H 0.18 5.47 6.19 -2.91 -0.02 5.45 16 30 H 0.21 2.05 8.06 -2.91 -0.02 2.02 16 31 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.15 4.54 6.26 -2.91 -0.02 4.52 16 33 H 0.11 4.31 6.22 -2.91 -0.02 4.29 16 34 H 0.10 5.37 6.22 -2.91 -0.02 5.35 16 35 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 Total: -1.00 -59.00 308.98 4.19 -54.81 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 1.14 Total: 25.49 kcal Atomic # 6 Polarization: -64.80 SS G_CDS: 4.06 Total: -60.73 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -1.73 Total: -58.82 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.31 Total: 1.58 kcal Total: -59.00 4.19 -54.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242680183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.392 kcal (2) G-P(sol) polarization free energy of solvation -59.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds