Wall clock time and date at job start Tue Mar 31 2020 07:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36248 * 119.93644 * 2 1 4 4 C 1.40924 * 119.87842 * 180.29402 * 3 2 1 5 5 C 1.41011 * 120.11618 * 179.73755 * 4 3 2 6 6 H 1.07997 * 120.00070 * 204.68215 * 5 4 3 7 7 C 1.39973 * 119.99820 * 24.68095 * 5 4 3 8 8 N 1.30822 * 120.00154 * 17.97831 * 7 5 4 9 9 Si 1.86803 * 120.00080 * 197.97420 * 7 5 4 10 10 H 1.48499 * 109.46894 * 94.69267 * 9 7 5 11 11 H 1.48496 * 109.47266 * 214.69568 * 9 7 5 12 12 H 1.48498 * 109.47062 * 334.69665 * 9 7 5 13 13 C 1.40963 * 119.77201 * 359.72260 * 4 3 2 14 14 C 1.36220 * 119.87555 * 359.97438 * 13 4 3 15 15 C 1.39941 * 119.94066 * 179.75929 * 2 1 3 16 16 C 1.47938 * 119.88700 * 0.02562 * 15 2 1 17 17 C 1.40042 * 120.42601 * 309.67619 * 16 15 2 18 18 N 1.31004 * 120.87401 * 179.97438 * 17 16 15 19 19 C 1.33596 * 122.38419 * 0.04338 * 18 17 16 20 20 S 1.76046 * 130.12083 * 179.97438 * 19 18 17 21 21 C 1.75260 * 92.26430 * 180.02562 * 20 19 18 22 22 C 1.31745 * 111.49557 * 359.97438 * 21 20 19 23 23 C 1.40026 * 120.42372 * 359.97438 * 19 18 17 24 24 C 1.39157 * 120.42686 * 129.72312 * 16 15 2 25 25 H 1.09004 * 109.47215 * 270.23571 * 1 2 3 26 26 H 1.08994 * 109.47207 * 30.23742 * 1 2 3 27 27 H 1.09005 * 109.46961 * 150.24455 * 1 2 3 28 28 H 1.08007 * 120.06315 * 0.02562 * 3 2 1 29 29 H 0.96997 * 119.99680 * 179.97438 * 8 7 5 30 30 H 1.07994 * 120.06709 * 180.02562 * 13 4 3 31 31 H 1.07996 * 119.94005 * 180.02562 * 14 13 4 32 32 H 1.08001 * 119.56539 * 0.04440 * 17 16 15 33 33 H 1.08004 * 124.25704 * 179.97438 * 21 20 19 34 34 H 1.07994 * 122.59042 * 179.97438 * 22 21 20 35 35 H 1.07999 * 120.69742 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1807 0.0000 4 6 3.5962 1.1793 -0.0063 5 6 4.3049 2.3983 -0.0119 6 1 5.3093 2.4372 -0.4070 7 6 3.7067 3.5580 0.4946 8 7 2.6635 3.4669 1.2787 9 14 4.3980 5.2357 0.0511 10 1 3.6595 5.7827 -1.1154 11 1 4.2473 6.1548 1.2077 12 1 5.8368 5.1034 -0.2918 13 6 4.2949 -0.0450 -0.0066 14 6 3.6054 -1.2198 -0.0003 15 6 2.2055 -1.2126 0.0051 16 6 1.4619 -2.4916 0.0099 17 6 0.4386 -2.7135 0.9398 18 7 -0.2258 -3.8425 0.9516 19 6 0.0303 -4.8325 0.0918 20 16 -0.7240 -6.4145 -0.0740 21 6 0.3182 -6.8479 -1.4148 22 6 1.1593 -5.8766 -1.7060 23 6 1.0378 -4.6929 -0.8705 24 6 1.7710 -3.4899 -0.9089 25 1 -0.3634 0.0042 1.0277 26 1 -0.3633 0.8878 -0.5175 27 1 -0.3633 -0.8922 -0.5101 28 1 1.6469 2.1161 0.0004 29 1 2.2492 4.2705 1.6300 30 1 5.3748 -0.0516 -0.0110 31 1 4.1397 -2.1583 -0.0001 32 1 0.1931 -1.9433 1.6560 33 1 0.2762 -7.7924 -1.9368 34 1 1.8837 -5.9539 -2.5032 35 1 2.5562 -3.3459 -1.6363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242680775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:18 Heat of formation + Delta-G solvation = 57.747807 kcal Electronic energy + Delta-G solvation = -19754.463816 eV Core-core repulsion = 16807.584632 eV Total energy + Delta-G solvation = -2946.879183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00225 -37.89644 -35.59684 -34.19632 -32.24122 -31.73849 -29.72674 -28.78182 -26.01624 -25.64116 -23.45266 -23.34835 -21.31604 -20.27753 -19.52632 -17.96438 -17.25166 -16.41311 -15.68012 -15.30104 -15.05787 -14.40699 -14.23737 -13.87934 -13.63074 -13.11361 -12.83823 -12.69957 -12.57990 -12.30693 -11.98727 -11.73005 -11.61408 -11.37831 -11.23635 -11.09413 -10.86160 -10.79834 -10.42805 -9.98680 -9.80894 -9.57174 -9.28634 -9.11987 -8.48835 -7.93321 -7.52493 -7.25161 -6.95337 -4.51198 0.76920 1.31752 1.42492 2.03075 2.37826 2.61538 2.95649 2.98125 3.00823 3.06681 3.78328 4.01880 4.42869 4.60275 4.87664 4.98755 5.30193 5.34137 5.48789 5.66338 5.73626 5.88158 5.97029 5.98355 6.10627 6.23081 6.33241 6.35978 6.55615 6.59494 6.76033 6.88759 6.90420 7.15630 7.18988 7.46773 7.72204 7.87999 7.95299 8.08410 8.11499 8.44396 8.68711 8.79414 9.95896 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.041402 B = 0.003273 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.141632 B = 8553.077693 C = 8980.052313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.044 4.044 3 C -0.167 4.167 4 C 0.121 3.879 5 C -0.449 4.449 6 H 0.082 0.918 7 C 0.074 3.926 8 N -0.778 5.778 9 Si 0.911 3.089 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.260 1.260 13 C -0.232 4.232 14 C -0.058 4.058 15 C -0.208 4.208 16 C -0.025 4.025 17 C 0.133 3.867 18 N -0.462 5.462 19 C 0.034 3.966 20 S 0.102 5.898 21 C -0.201 4.201 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.058 4.058 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.120 0.880 29 H 0.284 0.716 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.145 0.855 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -10.867 -3.864 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.044 4.044 3 C -0.186 4.186 4 C 0.118 3.882 5 C -0.477 4.477 6 H 0.100 0.900 7 C -0.146 4.146 8 N -0.401 5.401 9 Si 0.735 3.265 10 H -0.191 1.191 11 H -0.201 1.201 12 H -0.184 1.184 13 C -0.251 4.251 14 C -0.077 4.077 15 C -0.210 4.210 16 C -0.029 4.029 17 C -0.036 4.036 18 N -0.171 5.171 19 C -0.209 4.209 20 S 0.361 5.639 21 C -0.335 4.335 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.086 4.086 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.138 0.862 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.162 0.838 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.649 -11.714 -2.397 13.224 hybrid contribution 2.124 1.639 -1.413 3.032 sum -3.526 -10.075 -3.810 11.334 Atomic orbital electron populations 1.20801 0.93756 1.00954 1.00949 1.19198 0.93677 0.92684 0.98887 1.20858 0.94239 0.96121 1.07394 1.17703 0.92056 0.92121 0.86328 1.19698 1.01421 0.92388 1.34160 0.90006 1.26011 0.94200 1.01812 0.92545 1.69822 1.17725 1.31876 1.20694 0.86244 0.80595 0.80525 0.79154 1.19123 1.20080 1.18383 1.20646 0.97832 0.92477 1.14162 1.20268 0.92431 0.96577 0.98416 1.17660 0.92234 0.89128 1.21962 1.19773 0.95170 0.94468 0.93493 1.23140 0.91544 0.92580 0.96370 1.67036 1.27420 1.00231 1.22411 1.23378 0.99755 0.99469 0.98284 1.83984 1.39226 1.07687 1.33038 1.25023 1.01771 1.03742 1.02933 1.20815 1.00727 0.91870 1.00551 1.20066 0.98892 0.96165 0.97997 1.21543 0.98399 0.90698 0.97910 0.92233 0.92590 0.93151 0.86177 0.90455 0.88737 0.89265 0.81912 0.81480 0.83786 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 8.44 36.01 0.30 -1.68 16 2 C -0.04 -0.96 5.84 -104.70 -0.61 -1.57 16 3 C -0.17 -4.04 8.26 -39.28 -0.32 -4.37 16 4 C 0.12 3.02 5.57 -106.80 -0.60 2.42 16 5 C -0.45 -11.13 9.03 -37.88 -0.34 -11.48 16 6 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 7 C 0.07 1.75 5.13 -17.33 -0.09 1.66 16 8 N -0.78 -18.79 10.96 55.55 0.61 -18.18 16 9 Si 0.91 17.48 29.60 -169.99 -5.03 12.45 16 10 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 11 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 12 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 13 C -0.23 -5.34 9.73 -39.28 -0.38 -5.73 16 14 C -0.06 -1.24 9.46 -39.65 -0.37 -1.61 16 15 C -0.21 -4.33 5.51 -104.63 -0.58 -4.91 16 16 C -0.02 -0.46 4.69 -104.91 -0.49 -0.95 16 17 C 0.13 2.39 9.08 -17.23 -0.16 2.23 16 18 N -0.46 -8.37 10.36 -11.39 -0.12 -8.49 16 19 C 0.03 0.57 7.65 -16.11 -0.12 0.45 16 20 S 0.10 1.33 23.23 -107.50 -2.50 -1.17 16 21 C -0.20 -2.21 11.01 28.85 0.32 -1.89 16 22 C -0.11 -1.35 10.39 -38.62 -0.40 -1.75 16 23 C -0.12 -1.92 6.05 -105.36 -0.64 -2.56 16 24 C -0.06 -0.98 9.69 -38.22 -0.37 -1.35 16 25 H 0.06 1.02 7.50 -51.93 -0.39 0.63 16 26 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 27 H 0.05 0.89 6.45 -51.93 -0.33 0.55 16 28 H 0.12 3.01 6.16 -52.48 -0.32 2.69 16 29 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 30 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.09 1.68 8.04 -52.49 -0.42 1.26 16 32 H 0.16 2.77 6.87 -52.49 -0.36 2.41 16 33 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 312.51 15.07 4.71 4.71 Total: -1.00 -26.47 312.51 -10.67 -37.14 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -3.49 Total: 6.60 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: -4.85 Total: -33.07 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.49 Total: -26.67 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.50 Total: -1.17 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.47 -10.67 -37.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242680775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.887 kcal (2) G-P(sol) polarization free energy of solvation -26.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds