Wall clock time and date at job start Tue Mar 31 2020 07:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36248 * 119.93644 * 2 1 4 4 C 1.40924 * 119.87842 * 180.29402 * 3 2 1 5 5 C 1.41011 * 120.11618 * 179.73755 * 4 3 2 6 6 H 1.07997 * 120.00070 * 204.68215 * 5 4 3 7 7 C 1.39973 * 119.99820 * 24.68095 * 5 4 3 8 8 N 1.30822 * 120.00154 * 17.97831 * 7 5 4 9 9 Si 1.86803 * 120.00080 * 197.97420 * 7 5 4 10 10 H 1.48499 * 109.46894 * 94.69267 * 9 7 5 11 11 H 1.48496 * 109.47266 * 214.69568 * 9 7 5 12 12 H 1.48498 * 109.47062 * 334.69665 * 9 7 5 13 13 C 1.40963 * 119.77201 * 359.72260 * 4 3 2 14 14 C 1.36220 * 119.87555 * 359.97438 * 13 4 3 15 15 C 1.39941 * 119.94066 * 179.75929 * 2 1 3 16 16 C 1.47938 * 119.88700 * 0.02562 * 15 2 1 17 17 C 1.40042 * 120.42601 * 309.67619 * 16 15 2 18 18 N 1.31004 * 120.87401 * 179.97438 * 17 16 15 19 19 C 1.33596 * 122.38419 * 0.04338 * 18 17 16 20 20 S 1.76046 * 130.12083 * 179.97438 * 19 18 17 21 21 C 1.75260 * 92.26430 * 180.02562 * 20 19 18 22 22 C 1.31745 * 111.49557 * 359.97438 * 21 20 19 23 23 C 1.40026 * 120.42372 * 359.97438 * 19 18 17 24 24 C 1.39157 * 120.42686 * 129.72312 * 16 15 2 25 25 H 1.09004 * 109.47215 * 270.23571 * 1 2 3 26 26 H 1.08994 * 109.47207 * 30.23742 * 1 2 3 27 27 H 1.09005 * 109.46961 * 150.24455 * 1 2 3 28 28 H 1.08007 * 120.06315 * 0.02562 * 3 2 1 29 29 H 0.96997 * 119.99680 * 179.97438 * 8 7 5 30 30 H 1.07994 * 120.06709 * 180.02562 * 13 4 3 31 31 H 1.07996 * 119.94005 * 180.02562 * 14 13 4 32 32 H 1.08001 * 119.56539 * 0.04440 * 17 16 15 33 33 H 1.08004 * 124.25704 * 179.97438 * 21 20 19 34 34 H 1.07994 * 122.59042 * 179.97438 * 22 21 20 35 35 H 1.07999 * 120.69742 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1807 0.0000 4 6 3.5962 1.1793 -0.0063 5 6 4.3049 2.3983 -0.0119 6 1 5.3093 2.4372 -0.4070 7 6 3.7067 3.5580 0.4946 8 7 2.6635 3.4669 1.2787 9 14 4.3980 5.2357 0.0511 10 1 3.6595 5.7827 -1.1154 11 1 4.2473 6.1548 1.2077 12 1 5.8368 5.1034 -0.2918 13 6 4.2949 -0.0450 -0.0066 14 6 3.6054 -1.2198 -0.0003 15 6 2.2055 -1.2126 0.0051 16 6 1.4619 -2.4916 0.0099 17 6 0.4386 -2.7135 0.9398 18 7 -0.2258 -3.8425 0.9516 19 6 0.0303 -4.8325 0.0918 20 16 -0.7240 -6.4145 -0.0740 21 6 0.3182 -6.8479 -1.4148 22 6 1.1593 -5.8766 -1.7060 23 6 1.0378 -4.6929 -0.8705 24 6 1.7710 -3.4899 -0.9089 25 1 -0.3634 0.0042 1.0277 26 1 -0.3633 0.8878 -0.5175 27 1 -0.3633 -0.8922 -0.5101 28 1 1.6469 2.1161 0.0004 29 1 2.2492 4.2705 1.6300 30 1 5.3748 -0.0516 -0.0110 31 1 4.1397 -2.1583 -0.0001 32 1 0.1931 -1.9433 1.6560 33 1 0.2762 -7.7924 -1.9368 34 1 1.8837 -5.9539 -2.5032 35 1 2.5562 -3.3459 -1.6363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242680775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:17 Heat of formation + Delta-G solvation = 46.291809 kcal Electronic energy + Delta-G solvation = -19754.960585 eV Core-core repulsion = 16807.584632 eV Total energy + Delta-G solvation = -2947.375953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.32606 -39.54227 -36.77875 -35.83495 -33.80385 -33.31486 -31.14556 -30.24158 -27.66945 -27.24599 -24.85148 -24.56769 -22.79472 -21.79990 -21.02307 -19.14758 -19.03496 -17.68622 -17.23553 -16.77693 -16.36703 -15.84583 -15.50681 -15.29672 -15.12802 -14.55904 -14.35089 -14.04661 -13.97551 -13.65592 -13.52313 -13.29775 -13.10900 -12.82662 -12.70879 -12.63984 -12.39527 -12.07542 -11.82352 -11.53075 -11.45656 -11.20860 -10.88162 -10.47873 -9.73981 -9.29017 -9.24404 -8.77403 -8.64968 -6.34586 -0.40536 -0.03447 0.32146 0.94397 1.02085 1.17669 1.33092 1.38948 1.52006 1.52065 2.18680 2.58771 2.79195 3.44438 3.63141 3.72931 3.80521 4.00628 4.20026 4.34762 4.38163 4.49078 4.58128 4.64497 4.79119 4.86187 4.96142 5.01168 5.08259 5.11506 5.20209 5.30456 5.38619 5.45075 5.56753 5.71904 5.99266 6.09369 6.20734 6.34424 6.65176 6.75411 6.88738 7.00745 8.26055 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.041402 B = 0.003273 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.141632 B = 8553.077693 C = 8980.052313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.052 4.052 3 C -0.189 4.189 4 C 0.090 3.910 5 C -0.489 4.489 6 H 0.079 0.921 7 C 0.037 3.963 8 N -0.812 5.812 9 Si 0.982 3.018 10 H -0.262 1.262 11 H -0.268 1.268 12 H -0.258 1.258 13 C -0.247 4.247 14 C -0.062 4.062 15 C -0.195 4.195 16 C -0.046 4.046 17 C 0.126 3.874 18 N -0.478 5.478 19 C 0.007 3.993 20 S 0.120 5.880 21 C -0.176 4.176 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.053 4.053 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.291 0.709 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.164 0.836 33 H 0.211 0.789 34 H 0.175 0.825 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 -13.465 -5.106 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.052 4.052 3 C -0.209 4.209 4 C 0.088 3.912 5 C -0.517 4.517 6 H 0.097 0.903 7 C -0.180 4.180 8 N -0.436 5.436 9 Si 0.802 3.198 10 H -0.187 1.187 11 H -0.192 1.192 12 H -0.181 1.181 13 C -0.267 4.267 14 C -0.080 4.080 15 C -0.197 4.197 16 C -0.051 4.051 17 C -0.043 4.043 18 N -0.187 5.187 19 C -0.236 4.236 20 S 0.379 5.621 21 C -0.309 4.309 22 C -0.152 4.152 23 C -0.137 4.137 24 C -0.080 4.080 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.181 0.819 33 H 0.228 0.772 34 H 0.192 0.808 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.149 -14.336 -3.639 16.018 hybrid contribution 2.136 2.039 -1.062 3.138 sum -4.012 -12.296 -4.701 13.762 Atomic orbital electron populations 1.20751 0.91538 1.01480 1.01827 1.19552 0.95485 0.92345 0.97859 1.20818 0.94256 0.96429 1.09358 1.18039 0.92752 0.93090 0.87360 1.19895 1.01851 0.93622 1.36335 0.90332 1.26790 0.94378 1.05014 0.91823 1.69868 1.19038 1.33098 1.21639 0.85188 0.79775 0.75820 0.78969 1.18683 1.19209 1.18135 1.20824 0.98294 0.92740 1.14818 1.20539 0.92866 0.96934 0.97677 1.17922 0.92369 0.90046 1.19338 1.19599 0.96119 0.94087 0.95283 1.23082 0.91637 0.93001 0.96599 1.67070 1.27833 1.00606 1.23241 1.24058 1.00646 1.00632 0.98228 1.84015 1.39153 1.05019 1.33915 1.25555 0.99464 1.04790 1.01132 1.21038 1.02299 0.90651 1.01259 1.20435 0.98106 0.96916 0.98265 1.21713 0.98370 0.90541 0.97365 0.91126 0.92259 0.92268 0.87821 0.89838 0.88246 0.86783 0.81943 0.77175 0.80773 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.68 8.44 71.24 0.60 -3.07 16 2 C -0.05 -2.31 5.84 -19.91 -0.12 -2.43 16 3 C -0.19 -9.60 8.26 22.46 0.19 -9.42 16 4 C 0.09 4.72 5.57 -21.27 -0.12 4.61 16 5 C -0.49 -25.49 9.03 23.37 0.21 -25.28 16 6 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 7 C 0.04 1.78 5.13 85.26 0.44 2.22 16 8 N -0.81 -40.91 10.96 21.83 0.24 -40.67 16 9 Si 0.98 36.77 29.60 68.60 2.03 38.80 16 10 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 11 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 12 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 13 C -0.25 -11.77 9.73 22.47 0.22 -11.56 16 14 C -0.06 -2.63 9.46 22.23 0.21 -2.42 16 15 C -0.19 -8.15 5.51 -19.87 -0.11 -8.26 16 16 C -0.05 -1.68 4.69 -20.05 -0.09 -1.78 16 17 C 0.13 4.47 9.08 85.25 0.77 5.24 16 18 N -0.48 -16.86 10.36 -189.95 -1.97 -18.83 16 19 C 0.01 0.23 7.65 84.86 0.65 0.88 16 20 S 0.12 2.75 23.23 -56.49 -1.31 1.43 16 21 C -0.18 -2.97 11.01 67.10 0.74 -2.24 16 22 C -0.12 -2.50 10.39 23.39 0.24 -2.25 16 23 C -0.13 -3.66 6.05 -20.34 -0.12 -3.79 16 24 C -0.05 -1.67 9.69 23.15 0.22 -1.44 16 25 H 0.07 2.44 7.50 -2.38 -0.02 2.42 16 26 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 27 H 0.06 2.06 6.45 -2.38 -0.02 2.05 16 28 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 29 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 30 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.11 4.19 8.04 -2.91 -0.02 4.16 16 32 H 0.16 5.59 6.87 -2.91 -0.02 5.57 16 33 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -59.74 312.51 4.04 -55.69 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 1.12 Total: 24.56 kcal Atomic # 6 Polarization: -64.92 SS G_CDS: 3.93 Total: -60.98 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -1.73 Total: -59.50 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.31 Total: 1.43 kcal Total: -59.74 4.04 -55.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242680775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.985 kcal (2) G-P(sol) polarization free energy of solvation -59.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds