Wall clock time and date at job start Tue Mar 31 2020 07:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31257 * 119.79905 * 2 1 4 4 C 1.33061 * 121.71855 * 179.97438 * 3 2 1 5 5 C 1.47862 * 119.45422 * 179.97438 * 4 3 2 6 6 C 1.40194 * 119.94652 * 184.99969 * 5 4 3 7 7 C 1.36046 * 120.20010 * 180.02562 * 6 5 4 8 8 C 1.40105 * 120.66736 * 359.97427 * 7 6 5 9 9 S 1.75967 * 130.36624 * 180.02562 * 8 7 6 10 10 C 1.75280 * 92.22857 * 179.97438 * 9 8 7 11 11 C 1.31756 * 111.45603 * 359.97438 * 10 9 8 12 12 C 1.39929 * 120.02818 * 0.02562 * 8 7 6 13 13 C 1.38646 * 119.94909 * 4.72691 * 5 4 3 14 14 C 1.39956 * 121.08788 * 0.02562 * 4 3 2 15 15 C 1.36565 * 119.46716 * 0.02562 * 14 4 3 16 16 C 1.40951 * 119.79468 * 180.02562 * 2 1 3 17 17 C 1.41027 * 120.54949 * 359.97438 * 16 2 1 18 18 H 1.08010 * 120.00350 * 334.75393 * 17 16 2 19 19 C 1.39993 * 120.00013 * 154.75983 * 17 16 2 20 20 N 1.30802 * 119.99790 * 343.74550 * 19 17 16 21 21 Si 1.86807 * 120.00016 * 163.74552 * 19 17 16 22 22 H 1.48500 * 109.46888 * 94.77325 * 21 19 17 23 23 H 1.48492 * 109.46987 * 214.77692 * 21 19 17 24 24 H 1.48504 * 109.47003 * 334.77634 * 21 19 17 25 25 H 1.08999 * 109.46981 * 269.98254 * 1 2 3 26 26 H 1.09004 * 109.46796 * 29.97903 * 1 2 3 27 27 H 1.08998 * 109.47207 * 149.97654 * 1 2 3 28 28 H 1.08001 * 119.90049 * 359.97438 * 6 5 4 29 29 H 1.07995 * 119.66454 * 180.02562 * 7 6 5 30 30 H 1.08002 * 124.26853 * 180.02562 * 10 9 8 31 31 H 1.08000 * 122.56110 * 179.97438 * 11 10 9 32 32 H 1.07998 * 119.96302 * 0.02562 * 13 5 4 33 33 H 1.07997 * 120.26736 * 180.02562 * 14 4 3 34 34 H 1.07994 * 120.78807 * 180.25101 * 15 14 4 35 35 H 0.97006 * 119.99816 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1594 1.1390 0.0000 4 6 3.4892 1.1836 0.0005 5 6 4.1728 2.4947 -0.0001 6 6 5.5694 2.5558 -0.1054 7 6 6.2037 3.7593 -0.1060 8 6 5.4747 4.9513 -0.0023 9 16 6.0221 6.6235 0.0219 10 6 4.3841 7.2292 0.1717 11 6 3.5073 6.2461 0.1994 12 6 4.0800 4.9122 0.1037 13 6 3.4311 3.6620 0.0978 14 6 4.2516 0.0099 0.0005 15 6 3.6205 -1.2012 -0.0005 16 6 2.2074 -1.2232 -0.0005 17 6 1.5097 -2.4487 -0.0006 18 1 0.5074 -2.4996 0.3988 19 6 2.1161 -3.5995 -0.5180 20 7 3.1751 -3.4950 -1.2786 21 14 1.4129 -5.2843 -0.1223 22 1 0.4925 -5.7043 -1.2094 23 1 2.5197 -6.2671 -0.0033 24 1 0.6673 -5.2207 1.1604 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 6.1436 1.6446 -0.1856 29 1 7.2799 3.7963 -0.1880 30 1 4.1260 8.2762 0.2325 31 1 2.4447 6.4173 0.2881 32 1 2.3550 3.6125 0.1748 33 1 5.3304 0.0615 0.0014 34 1 4.1877 -2.1201 0.0035 35 1 3.5951 -4.2923 -1.6375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244301924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:14 Heat of formation + Delta-G solvation = 45.753802 kcal Electronic energy + Delta-G solvation = -19600.980148 eV Core-core repulsion = 16653.580866 eV Total energy + Delta-G solvation = -2947.399282 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86656 -39.83508 -36.56030 -35.77117 -33.67841 -32.85271 -31.34431 -30.31777 -28.72943 -26.92398 -24.71557 -23.98094 -22.88934 -22.03947 -20.84693 -19.28427 -18.92061 -17.57124 -16.92583 -16.66283 -16.41592 -15.86687 -15.36975 -15.08400 -14.79323 -14.55398 -14.54062 -14.35180 -13.97351 -13.53559 -13.38190 -13.21219 -13.14151 -12.87970 -12.67161 -12.56874 -12.25090 -12.05966 -12.04519 -11.66583 -11.52125 -11.24292 -10.62312 -10.19046 -9.94852 -9.72096 -9.16976 -8.78148 -8.45090 -6.40037 -0.22830 0.01702 0.64305 0.89324 1.07742 1.09897 1.38387 1.40463 1.53084 1.58906 2.15497 2.56309 2.96260 3.65148 3.68399 3.72282 3.91527 4.19793 4.25479 4.43478 4.50634 4.57560 4.64179 4.82586 4.85004 4.90141 4.98045 5.00399 5.05476 5.11056 5.16854 5.25558 5.32907 5.46629 5.49707 5.68202 5.77891 5.92661 6.00767 6.04227 6.45592 6.68086 6.76199 7.70442 8.16012 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.037572 B = 0.003257 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.059179 B = 8594.368729 C = 9264.947233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.015 4.015 3 N -0.461 5.461 4 C -0.012 4.012 5 C -0.008 4.008 6 C -0.112 4.112 7 C -0.079 4.079 8 C -0.173 4.173 9 S 0.088 5.912 10 C -0.181 4.181 11 C -0.133 4.133 12 C -0.087 4.087 13 C -0.090 4.090 14 C -0.131 4.131 15 C -0.163 4.163 16 C 0.045 3.955 17 C -0.455 4.455 18 H 0.096 0.904 19 C 0.034 3.966 20 N -0.808 5.808 21 Si 0.988 3.012 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.254 1.254 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.140 0.860 29 H 0.152 0.848 30 H 0.201 0.799 31 H 0.159 0.841 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.602 11.162 1.905 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.160 4.160 3 N -0.169 5.169 4 C -0.146 4.146 5 C -0.010 4.010 6 C -0.134 4.134 7 C -0.101 4.101 8 C -0.288 4.288 9 S 0.350 5.650 10 C -0.315 4.315 11 C -0.163 4.163 12 C -0.095 4.095 13 C -0.111 4.111 14 C -0.151 4.151 15 C -0.188 4.188 16 C 0.040 3.960 17 C -0.483 4.483 18 H 0.114 0.886 19 C -0.184 4.184 20 N -0.432 5.432 21 Si 0.808 3.192 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.177 1.177 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.169 0.831 30 H 0.218 0.782 31 H 0.177 0.823 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.708 12.592 1.676 13.548 hybrid contribution -1.058 -2.487 0.016 2.703 sum 3.650 10.105 1.693 10.877 Atomic orbital electron populations 1.20250 0.88736 1.01774 1.01434 1.21575 0.96951 0.87836 1.09626 1.66821 1.09263 1.30496 1.10364 1.19208 0.89122 0.91955 1.14304 1.18529 0.93235 0.91074 0.98202 1.20995 0.92971 0.98580 1.00823 1.20295 1.00339 0.89258 1.00234 1.22997 0.96667 0.98999 1.10139 1.83739 1.07844 0.94430 1.78972 1.25368 0.95070 1.04368 1.06650 1.21150 1.01977 0.89341 1.03817 1.19573 0.92447 0.94227 1.03253 1.21034 0.99782 0.89835 1.00429 1.21542 0.99959 0.92889 1.00690 1.21351 0.94982 0.96955 1.05530 1.18778 0.93093 0.94225 0.89920 1.19962 1.02291 0.92506 1.33533 0.88579 1.26961 0.94285 1.05513 0.91650 1.69832 1.18030 1.34005 1.21310 0.85083 0.78967 0.74995 0.80172 1.18466 1.19099 1.17724 0.91886 0.92220 0.91219 0.84237 0.83078 0.78231 0.82307 0.86135 0.85574 0.86482 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.65 9.58 71.24 0.68 -1.97 16 2 C -0.01 -0.73 6.86 43.31 0.30 -0.44 16 3 N -0.46 -22.98 9.28 -170.99 -1.59 -24.56 16 4 C -0.01 -0.55 6.73 41.92 0.28 -0.27 16 5 C -0.01 -0.31 5.86 -20.16 -0.12 -0.43 16 6 C -0.11 -3.86 9.33 22.24 0.21 -3.65 16 7 C -0.08 -2.34 9.99 22.21 0.22 -2.12 16 8 C -0.17 -5.21 6.49 23.13 0.15 -5.06 16 9 S 0.09 1.99 23.23 -56.49 -1.31 0.68 16 10 C -0.18 -3.70 11.01 67.09 0.74 -2.96 16 11 C -0.13 -3.38 10.39 23.40 0.24 -3.13 16 12 C -0.09 -2.86 6.03 -20.36 -0.12 -2.98 16 13 C -0.09 -3.47 9.63 23.01 0.22 -3.25 16 14 C -0.13 -6.16 9.37 22.29 0.21 -5.95 16 15 C -0.16 -8.39 8.72 22.64 0.20 -8.19 16 16 C 0.04 2.33 5.58 -21.17 -0.12 2.21 16 17 C -0.45 -22.46 8.14 23.38 0.19 -22.27 16 18 H 0.10 4.43 6.86 -2.91 -0.02 4.41 16 19 C 0.03 1.56 5.19 85.27 0.44 2.00 16 20 N -0.81 -39.15 10.94 21.83 0.24 -38.91 16 21 Si 0.99 34.59 29.59 68.60 2.03 36.62 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 23 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 24 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.07 2.78 6.76 -2.39 -0.02 2.76 16 28 H 0.14 4.35 6.16 -2.91 -0.02 4.33 16 29 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.12 4.84 7.49 -2.91 -0.02 4.81 16 33 H 0.13 5.09 6.16 -2.91 -0.02 5.07 16 34 H 0.12 6.09 6.26 -2.91 -0.02 6.08 16 35 H 0.30 12.79 8.30 -92.70 -0.77 12.02 16 Total: -1.00 -59.88 311.70 4.22 -55.65 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 1.13 Total: 28.99 kcal Atomic # 6 Polarization: -62.19 SS G_CDS: 3.72 Total: -58.46 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -1.35 Total: -63.48 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.31 Total: 0.68 kcal Total: -59.88 4.22 -55.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244301924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.405 kcal (2) G-P(sol) polarization free energy of solvation -59.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds