Wall clock time and date at job start Tue Mar 31 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00041 * 2 1 4 4 H 1.48501 * 109.47160 * 269.99827 * 3 2 1 5 5 H 1.48495 * 109.46933 * 30.00345 * 3 2 1 6 6 H 1.48497 * 109.47066 * 150.00100 * 3 2 1 7 7 C 1.37883 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99215 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00101 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46747 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00239 * 274.72228 * 10 9 7 12 12 C 1.54274 * 110.02803 * 57.90872 * 11 10 9 13 13 C 1.54965 * 104.15870 * 217.13530 * 12 11 10 14 14 C 1.54892 * 102.77907 * 37.89264 * 13 12 11 15 15 C 1.53875 * 110.03535 * 300.69721 * 11 10 9 16 16 S 1.65597 * 119.99791 * 95.00454 * 10 9 7 17 17 O 1.42103 * 104.27453 * 206.07116 * 16 10 9 18 18 O 1.42101 * 104.27834 * 333.92149 * 16 10 9 19 19 C 1.81392 * 104.45287 * 89.99800 * 16 10 9 20 20 C 1.53002 * 109.47473 * 180.02562 * 19 16 10 21 21 Cl 1.80297 * 109.47246 * 179.97438 * 20 19 16 22 22 H 0.97008 * 120.00034 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47015 * 60.00010 * 9 7 2 24 24 H 1.08998 * 109.47238 * 300.00034 * 9 7 2 25 25 H 1.08999 * 110.01813 * 179.29860 * 11 10 9 26 26 H 1.08992 * 110.48711 * 335.78321 * 12 11 10 27 27 H 1.08999 * 110.48339 * 98.43132 * 12 11 10 28 28 H 1.09004 * 110.72039 * 279.57668 * 13 12 11 29 29 H 1.08996 * 110.92125 * 156.30080 * 13 12 11 30 30 H 1.08996 * 110.48378 * 203.40685 * 14 13 12 31 31 H 1.08997 * 110.60121 * 80.80986 * 14 13 12 32 32 H 1.08997 * 110.03412 * 238.57231 * 15 11 10 33 33 H 1.09009 * 110.03022 * 359.97438 * 15 11 10 34 34 H 1.09005 * 109.47063 * 299.99983 * 19 16 10 35 35 H 1.08995 * 109.47533 * 59.99686 * 19 16 10 36 36 H 1.09005 * 109.46725 * 299.99899 * 20 19 16 37 37 H 1.08995 * 109.47234 * 59.99213 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.1459 -3.3005 1.2635 12 6 2.7928 -3.3517 2.0027 13 6 3.1719 -3.2038 3.4980 14 6 4.3332 -2.1797 3.4573 15 6 5.1251 -2.5560 2.1880 16 16 4.3931 -3.3146 -1.4297 17 8 4.2143 -4.6998 -1.1683 18 8 3.6014 -2.6442 -2.4007 19 6 6.1505 -2.9334 -1.6678 20 6 6.6381 -3.5687 -2.9715 21 17 8.3847 -3.1892 -3.2085 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6804 0.8888 24 1 3.8745 -0.6800 -0.8911 25 1 4.5065 -4.3116 1.0742 26 1 2.1546 -2.5263 1.6877 27 1 2.2978 -4.3067 1.8265 28 1 3.5107 -4.1562 3.9059 29 1 2.3334 -2.8144 4.0753 30 1 4.9612 -2.2799 4.3425 31 1 3.9461 -1.1639 3.3782 32 1 5.9605 -3.2060 2.4481 33 1 5.4919 -1.6553 1.6957 34 1 6.2842 -1.8527 -1.7185 35 1 6.7253 -3.3317 -0.8318 36 1 6.5043 -4.6494 -2.9212 37 1 6.0633 -3.1700 -3.8073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253473490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:21 Heat of formation + Delta-G solvation = -86.797729 kcal Electronic energy + Delta-G solvation = -21082.859607 eV Core-core repulsion = 17819.970689 eV Total energy + Delta-G solvation = -3262.888917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.080 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.33378 -36.72906 -36.38233 -35.51133 -34.16154 -32.62394 -32.30676 -28.51905 -28.19247 -26.29610 -23.96128 -22.22408 -20.25721 -19.74747 -18.24440 -17.47435 -16.97821 -16.21061 -16.12436 -15.36092 -15.01599 -14.42447 -14.29416 -14.04695 -13.39840 -13.28416 -12.68517 -12.65998 -12.35552 -12.30524 -11.98562 -11.84140 -11.65753 -11.38809 -11.06896 -10.97809 -10.85634 -10.74816 -10.64683 -10.55048 -10.51746 -10.33561 -10.30016 -10.09341 -10.02643 -9.30973 -8.60110 -8.14131 -6.11070 -4.08592 0.47070 2.03224 3.06346 3.24497 3.28635 3.33002 4.04264 4.25725 4.34937 4.38882 4.67300 4.88683 4.97525 5.04396 5.14831 5.23719 5.28065 5.53022 5.61863 5.81906 5.96490 5.97758 6.08184 6.10466 6.21164 6.31837 6.49906 6.59174 6.75031 6.76165 7.01654 7.24480 7.45942 7.56003 8.45645 8.93855 9.47512 11.01509 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.006508 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.395063 B = 4301.180536 C = 5159.645818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.866 3.134 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.085 0.915 9 C 0.223 3.777 10 N -0.968 5.968 11 C 0.151 3.849 12 C -0.151 4.151 13 C -0.121 4.121 14 C -0.119 4.119 15 C -0.139 4.139 16 S 2.603 3.397 17 O -0.961 6.961 18 O -0.927 6.927 19 C -0.664 4.664 20 C -0.018 4.018 21 Cl -0.173 7.173 22 H 0.265 0.735 23 H 0.038 0.962 24 H 0.028 0.972 25 H 0.088 0.912 26 H 0.128 0.872 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.106 0.894 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.843 -5.553 1.463 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.693 3.307 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.103 0.897 9 C 0.100 3.900 10 N -0.806 5.806 11 C 0.044 3.956 12 C -0.189 4.189 13 C -0.159 4.159 14 C -0.157 4.157 15 C -0.178 4.178 16 S 2.692 3.308 17 O -0.952 6.952 18 O -0.917 6.917 19 C -0.788 4.788 20 C -0.082 4.082 21 Cl -0.146 7.146 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.106 0.894 26 H 0.146 0.854 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.124 0.876 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.286 -5.882 0.861 14.556 hybrid contribution 1.150 1.352 0.216 1.788 sum 14.436 -4.530 1.076 15.168 Atomic orbital electron populations 1.69883 1.06133 1.26954 1.50012 1.24854 0.94700 0.98709 0.94547 0.87010 0.80432 0.84375 0.78861 1.19899 1.21022 1.18949 1.21321 0.88984 0.94962 1.50996 0.89722 1.19475 0.96413 0.76834 0.97250 1.57335 1.77511 1.25860 1.19925 1.21428 0.96540 0.94094 0.83489 1.23158 0.97665 1.04947 0.93153 1.22426 0.97902 0.98135 0.97415 1.22277 0.96897 1.00052 0.96474 1.22593 0.97853 1.00708 0.96642 1.05370 0.76313 0.74412 0.74713 1.93553 1.84732 1.32220 1.84659 1.93664 1.62899 1.75020 1.60069 1.31353 1.30342 1.12235 1.04909 1.23853 0.83803 1.02928 0.97638 1.98721 1.22441 1.95809 1.97670 0.92520 0.94387 0.95421 0.89376 0.85383 0.92320 0.92568 0.91719 0.92567 0.91223 0.92052 0.90952 0.84070 0.84375 0.87570 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 20.15 27.47 -169.99 -4.67 15.48 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 7 C -0.52 -13.79 7.79 -34.44 -0.27 -14.06 16 8 H 0.08 2.46 7.21 -52.49 -0.38 2.08 16 9 C 0.22 4.79 3.55 -5.19 -0.02 4.77 16 10 N -0.97 -17.72 2.64 -107.38 -0.28 -18.00 16 11 C 0.15 2.45 3.25 -66.81 -0.22 2.24 16 12 C -0.15 -2.66 6.30 -25.03 -0.16 -2.82 16 13 C -0.12 -1.74 6.91 -24.70 -0.17 -1.91 16 14 C -0.12 -1.64 6.83 -25.07 -0.17 -1.81 16 15 C -0.14 -1.89 6.02 -25.61 -0.15 -2.04 16 16 S 2.60 44.16 5.36 -107.50 -0.58 43.58 16 17 O -0.96 -17.69 16.59 -57.54 -0.95 -18.65 16 18 O -0.93 -19.63 16.99 -57.54 -0.98 -20.61 16 19 C -0.66 -7.87 6.30 37.16 0.23 -7.63 16 20 C -0.02 -0.20 6.66 37.16 0.25 0.05 16 21 Cl -0.17 -1.95 29.15 -51.86 -1.51 -3.46 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.04 0.78 5.86 -51.93 -0.30 0.48 16 24 H 0.03 0.59 7.04 -51.93 -0.37 0.22 16 25 H 0.09 1.32 6.91 -51.93 -0.36 0.96 16 26 H 0.13 2.76 4.44 -51.93 -0.23 2.53 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.99 6.89 -51.92 -0.36 0.63 16 34 H 0.14 1.56 8.14 -51.92 -0.42 1.14 16 35 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 320.06 15.07 4.82 4.82 Total: -1.00 -31.84 320.06 -9.54 -41.38 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.39 Total: 2.20 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -0.77 Total: -21.26 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.49 Total: -43.49 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -1.93 Total: -39.25 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Atomic # 16 Polarization: 44.16 SS G_CDS: -0.58 Total: 43.58 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -1.51 Total: -3.46 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.84 -9.54 -41.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253473490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.415 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds