Wall clock time and date at job start Tue Mar 31 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00041 * 2 1 4 4 H 1.48501 * 109.47160 * 269.99827 * 3 2 1 5 5 H 1.48495 * 109.46933 * 30.00345 * 3 2 1 6 6 H 1.48497 * 109.47066 * 150.00100 * 3 2 1 7 7 C 1.37883 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99215 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00101 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46747 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00239 * 274.72228 * 10 9 7 12 12 C 1.54274 * 110.02803 * 57.90872 * 11 10 9 13 13 C 1.54965 * 104.15870 * 217.13530 * 12 11 10 14 14 C 1.54892 * 102.77907 * 37.89264 * 13 12 11 15 15 C 1.53875 * 110.03535 * 300.69721 * 11 10 9 16 16 S 1.65597 * 119.99791 * 95.00454 * 10 9 7 17 17 O 1.42103 * 104.27453 * 206.07116 * 16 10 9 18 18 O 1.42101 * 104.27834 * 333.92149 * 16 10 9 19 19 C 1.81392 * 104.45287 * 89.99800 * 16 10 9 20 20 C 1.53002 * 109.47473 * 180.02562 * 19 16 10 21 21 Cl 1.80297 * 109.47246 * 179.97438 * 20 19 16 22 22 H 0.97008 * 120.00034 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47015 * 60.00010 * 9 7 2 24 24 H 1.08998 * 109.47238 * 300.00034 * 9 7 2 25 25 H 1.08999 * 110.01813 * 179.29860 * 11 10 9 26 26 H 1.08992 * 110.48711 * 335.78321 * 12 11 10 27 27 H 1.08999 * 110.48339 * 98.43132 * 12 11 10 28 28 H 1.09004 * 110.72039 * 279.57668 * 13 12 11 29 29 H 1.08996 * 110.92125 * 156.30080 * 13 12 11 30 30 H 1.08996 * 110.48378 * 203.40685 * 14 13 12 31 31 H 1.08997 * 110.60121 * 80.80986 * 14 13 12 32 32 H 1.08997 * 110.03412 * 238.57231 * 15 11 10 33 33 H 1.09009 * 110.03022 * 359.97438 * 15 11 10 34 34 H 1.09005 * 109.47063 * 299.99983 * 19 16 10 35 35 H 1.08995 * 109.47533 * 59.99686 * 19 16 10 36 36 H 1.09005 * 109.46725 * 299.99899 * 20 19 16 37 37 H 1.08995 * 109.47234 * 59.99213 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.1459 -3.3005 1.2635 12 6 2.7928 -3.3517 2.0027 13 6 3.1719 -3.2038 3.4980 14 6 4.3332 -2.1797 3.4573 15 6 5.1251 -2.5560 2.1880 16 16 4.3931 -3.3146 -1.4297 17 8 4.2143 -4.6998 -1.1683 18 8 3.6014 -2.6442 -2.4007 19 6 6.1505 -2.9334 -1.6678 20 6 6.6381 -3.5687 -2.9715 21 17 8.3847 -3.1892 -3.2085 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6804 0.8888 24 1 3.8745 -0.6800 -0.8911 25 1 4.5065 -4.3116 1.0742 26 1 2.1546 -2.5263 1.6877 27 1 2.2978 -4.3067 1.8265 28 1 3.5107 -4.1562 3.9059 29 1 2.3334 -2.8144 4.0753 30 1 4.9612 -2.2799 4.3425 31 1 3.9461 -1.1639 3.3782 32 1 5.9605 -3.2060 2.4481 33 1 5.4919 -1.6553 1.6957 34 1 6.2842 -1.8527 -1.7185 35 1 6.7253 -3.3317 -0.8318 36 1 6.5043 -4.6494 -2.9212 37 1 6.0633 -3.1700 -3.8073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253473490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:21 Heat of formation + Delta-G solvation = -109.154912 kcal Electronic energy + Delta-G solvation = -21083.829087 eV Core-core repulsion = 17819.970689 eV Total energy + Delta-G solvation = -3263.858397 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.080 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62439 -38.18605 -37.26490 -36.96188 -35.68279 -34.21061 -33.58636 -30.18578 -29.41853 -27.71562 -24.97027 -24.00950 -21.45428 -21.02286 -19.62059 -18.94563 -18.84593 -17.52883 -17.40046 -16.56040 -16.18777 -16.06368 -15.65315 -15.06295 -14.83990 -14.41523 -14.27186 -14.02142 -13.84827 -13.60439 -13.28818 -13.23685 -13.09810 -12.96227 -12.62651 -12.42410 -12.10512 -12.00992 -11.90434 -11.83451 -11.76418 -11.64884 -11.48205 -11.43926 -11.25369 -11.07454 -10.66903 -9.63880 -8.20497 -6.21676 -0.83959 1.14861 1.39098 1.41967 1.49538 1.74558 2.39825 2.91061 3.10561 3.17915 3.27365 3.64224 3.74376 3.87731 4.10405 4.14061 4.28804 4.30748 4.61757 4.64195 4.74498 4.79150 4.84139 4.89851 4.97212 5.10793 5.20400 5.25649 5.36257 5.54072 5.55693 5.60872 5.77128 6.02207 6.39759 6.79395 7.37376 8.96288 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.006508 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.395063 B = 4301.180536 C = 5159.645818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.226 1.226 7 C -0.518 4.518 8 H 0.035 0.965 9 C 0.231 3.769 10 N -0.979 5.979 11 C 0.144 3.856 12 C -0.161 4.161 13 C -0.115 4.115 14 C -0.118 4.118 15 C -0.133 4.133 16 S 2.601 3.399 17 O -0.985 6.985 18 O -0.983 6.983 19 C -0.628 4.628 20 C -0.030 4.030 21 Cl -0.167 7.167 22 H 0.263 0.737 23 H 0.057 0.943 24 H 0.037 0.963 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.123 0.877 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.290 -5.178 2.298 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.755 3.245 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.148 1.148 7 C -0.557 4.557 8 H 0.053 0.947 9 C 0.107 3.893 10 N -0.815 5.815 11 C 0.038 3.962 12 C -0.200 4.200 13 C -0.153 4.153 14 C -0.156 4.156 15 C -0.172 4.172 16 S 2.696 3.304 17 O -0.976 6.976 18 O -0.973 6.973 19 C -0.758 4.758 20 C -0.094 4.094 21 Cl -0.141 7.141 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.055 0.945 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.141 0.859 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 17.701 -5.545 1.723 18.629 hybrid contribution -0.225 1.056 -0.089 1.084 sum 17.476 -4.488 1.634 18.117 Atomic orbital electron populations 1.70074 1.08393 1.27837 1.52843 1.25836 0.95521 1.03150 0.94580 0.85950 0.80539 0.78830 0.79191 1.19738 1.21259 1.14815 1.21619 0.91987 0.92982 1.49107 0.94707 1.19217 0.92846 0.79075 0.98193 1.57213 1.78675 1.24570 1.21062 1.21666 0.96134 0.95268 0.83141 1.23089 0.98320 1.02252 0.96366 1.22408 0.98326 0.99901 0.94673 1.22292 0.96750 0.98445 0.98106 1.22602 0.97858 1.01267 0.95440 1.05076 0.78327 0.73449 0.73506 1.93515 1.86291 1.33215 1.84571 1.93601 1.66639 1.75645 1.61424 1.30947 1.24042 1.13817 1.07016 1.24032 0.84026 1.04168 0.97219 1.98729 1.21907 1.95849 1.97582 0.92767 0.92503 0.94491 0.87951 0.89961 0.93690 0.90020 0.92600 0.89412 0.93136 0.88371 0.90455 0.82250 0.81099 0.85870 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 2 C 0.01 0.35 5.47 84.66 0.46 0.82 16 3 Si 0.93 41.52 27.47 68.60 1.88 43.40 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.23 -8.54 6.54 99.48 0.65 -7.89 16 7 C -0.52 -28.50 7.79 25.60 0.20 -28.30 16 8 H 0.03 2.20 7.21 -2.91 -0.02 2.18 16 9 C 0.23 9.76 3.55 85.63 0.30 10.07 16 10 N -0.98 -34.98 2.64 -493.65 -1.30 -36.28 16 11 C 0.14 4.45 3.25 45.72 0.15 4.59 16 12 C -0.16 -5.87 6.30 31.70 0.20 -5.67 16 13 C -0.12 -3.20 6.91 31.91 0.22 -2.98 16 14 C -0.12 -2.88 6.83 31.67 0.22 -2.67 16 15 C -0.13 -3.08 6.02 31.32 0.19 -2.89 16 16 S 2.60 85.82 5.36 -56.49 -0.30 85.52 16 17 O -0.99 -35.82 16.59 -127.65 -2.12 -37.94 16 18 O -0.98 -42.41 16.99 -127.65 -2.17 -44.58 16 19 C -0.63 -12.35 6.30 71.98 0.45 -11.90 16 20 C -0.03 -0.55 6.66 71.98 0.48 -0.07 16 21 Cl -0.17 -3.14 29.15 -2.72 -0.08 -3.22 16 22 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 23 H 0.06 2.20 5.86 -2.39 -0.01 2.19 16 24 H 0.04 1.51 7.04 -2.39 -0.02 1.49 16 25 H 0.10 2.85 6.91 -2.39 -0.02 2.84 16 26 H 0.08 3.80 4.44 -2.39 -0.01 3.79 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.75 6.89 -2.38 -0.02 1.74 16 34 H 0.16 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.17 2.38 8.14 -2.39 -0.02 2.37 16 36 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -74.95 320.06 0.09 -74.86 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 1.00 Total: 16.19 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 2.87 Total: -39.01 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -1.01 Total: -95.22 kcal Atomic # 8 Polarization: -78.23 SS G_CDS: -4.29 Total: -82.52 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.40 kcal Atomic # 16 Polarization: 85.82 SS G_CDS: -0.30 Total: 85.52 kcal Atomic # 17 Polarization: -3.14 SS G_CDS: -0.08 Total: -3.22 kcal Total: -74.95 0.09 -74.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253473490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.291 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds