Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.43205 * 119.99957 * 207.70883 * 3 2 1 5 5 N 3.51038 * 140.69153 * 207.71135 * 2 1 3 6 6 C 1.41159 * 119.99996 * 27.70569 * 3 2 1 7 7 C 1.38983 * 119.99723 * 353.96966 * 6 3 2 8 8 H 1.08003 * 119.99506 * 138.37711 * 7 6 3 9 9 C 1.40822 * 120.00032 * 318.37199 * 7 6 3 10 10 N 1.30333 * 120.00243 * 340.08550 * 9 7 6 11 11 Si 1.86796 * 119.99771 * 160.09096 * 9 7 6 12 12 H 1.48500 * 109.47143 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47617 * 119.99896 * 11 9 7 14 14 H 1.48507 * 109.46781 * 240.00136 * 11 9 7 15 15 N 1.38225 * 119.99713 * 173.96780 * 6 3 2 16 16 S 1.65603 * 119.99935 * 183.51189 * 15 6 3 17 17 O 1.42095 * 104.27755 * 52.82542 * 16 15 6 18 18 O 1.42097 * 104.27888 * 180.68228 * 16 15 6 19 19 C 1.81398 * 104.44680 * 296.75352 * 16 15 6 20 20 C 1.54261 * 110.03523 * 299.55904 * 19 16 15 21 21 C 1.54963 * 104.16342 * 217.13819 * 20 19 16 22 22 C 1.54896 * 102.77667 * 37.88567 * 21 20 19 23 23 C 1.53877 * 110.03093 * 182.33830 * 19 16 15 24 24 H 0.96998 * 120.00001 * 185.07337 * 10 9 7 25 25 H 0.97005 * 120.00392 * 3.50722 * 15 6 3 26 26 H 1.09003 * 110.01868 * 60.95198 * 19 16 15 27 27 H 1.09004 * 110.48731 * 335.78487 * 20 19 16 28 28 H 1.08995 * 110.49016 * 98.42690 * 20 19 16 29 29 H 1.09000 * 110.71874 * 279.57608 * 21 20 19 30 30 H 1.09001 * 110.92718 * 156.29545 * 21 20 19 31 31 H 1.08996 * 110.48560 * 203.40812 * 22 21 20 32 32 H 1.09000 * 110.59949 * 80.82202 * 22 21 20 33 33 H 1.08996 * 110.03409 * 238.56765 * 23 19 16 34 34 H 1.08995 * 110.03394 * 359.95604 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2836 1.0989 0.5767 5 7 3.8522 1.9687 1.0341 6 6 3.2743 -1.0814 -0.5684 7 6 2.5856 -2.2031 -1.0145 8 1 2.8654 -2.6736 -1.9455 9 6 1.5231 -2.7262 -0.2525 10 7 1.4232 -2.4334 1.0136 11 14 0.2571 -3.8399 -1.0563 12 1 0.5932 -4.0159 -2.4921 13 1 0.2611 -5.1623 -0.3809 14 1 -1.0898 -3.2262 -0.9353 15 7 4.6508 -1.0251 -0.6812 16 16 5.4714 -2.2555 -1.4264 17 8 4.8263 -2.3954 -2.6847 18 8 6.8360 -1.8683 -1.3418 19 6 5.1557 -3.7063 -0.3843 20 6 5.6899 -3.4592 1.0416 21 6 6.2507 -4.8356 1.4802 22 6 6.8866 -5.3778 0.1760 23 6 5.9158 -4.9259 -0.9345 24 1 0.7354 -2.8512 1.5552 25 1 5.1362 -0.2650 -0.3241 26 1 4.0866 -3.9165 -0.3513 27 1 6.4827 -2.7113 1.0277 28 1 4.8817 -3.1473 1.7031 29 1 5.4470 -5.4893 1.8188 30 1 7.0052 -4.7185 2.2582 31 1 6.9515 -6.4653 0.2068 32 1 7.8736 -4.9419 0.0206 33 1 5.2158 -5.7282 -1.1676 34 1 6.4737 -4.6462 -1.8280 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259804437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = -32.542324 kcal Electronic energy + Delta-G solvation = -22158.200176 eV Core-core repulsion = 18796.556456 eV Total energy + Delta-G solvation = -3361.643720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -37.91424 -37.66483 -36.66303 -35.65110 -35.00949 -34.78277 -33.50867 -29.75125 -29.06645 -28.71852 -27.10569 -22.11629 -21.06893 -20.75258 -19.57843 -18.26037 -18.19823 -16.88969 -16.82578 -16.01312 -15.64552 -15.34343 -14.90713 -14.13652 -13.52009 -13.43202 -13.14501 -12.71109 -12.55581 -12.40385 -12.23797 -11.97897 -11.82863 -11.80797 -11.66533 -11.57871 -11.50854 -11.29956 -11.23059 -11.14999 -11.02185 -10.92644 -10.84621 -10.69144 -10.63482 -10.23380 -9.99885 -9.55605 -7.50966 -7.29392 -5.48943 0.58152 2.31449 2.84808 2.85640 2.97842 3.00750 3.56627 3.77457 4.01590 4.06501 4.25775 4.29137 4.36183 4.48534 4.81786 4.86152 5.22893 5.24838 5.35544 5.49862 5.53676 5.57624 5.66016 5.73484 5.78711 5.88262 6.00442 6.17700 6.22846 6.28020 6.35601 6.47284 6.97112 7.29589 7.68134 7.89341 8.01474 8.83868 9.24687 9.45177 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.008179 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.435382 B = 3422.714908 C = 4338.329519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C 0.349 3.651 3 C -0.258 4.258 4 C 0.301 3.699 5 N -0.525 5.525 6 C 0.424 3.576 7 C -0.505 4.505 8 H 0.133 0.867 9 C 0.095 3.905 10 N -0.723 5.723 11 Si 0.907 3.093 12 H -0.247 1.247 13 H -0.265 1.265 14 H -0.257 1.257 15 N -1.047 6.047 16 S 2.610 3.390 17 O -0.947 6.947 18 O -0.967 6.967 19 C -0.583 4.583 20 C -0.101 4.101 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.099 4.099 24 H 0.301 0.699 25 H 0.416 0.584 26 H 0.166 0.834 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.197 -11.151 -0.354 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C 0.039 3.961 3 C -0.278 4.278 4 C -0.006 4.006 5 N -0.208 5.208 6 C 0.316 3.684 7 C -0.537 4.537 8 H 0.150 0.850 9 C -0.136 4.136 10 N -0.342 5.342 11 Si 0.728 3.272 12 H -0.169 1.169 13 H -0.190 1.190 14 H -0.181 1.181 15 N -0.788 5.788 16 S 2.706 3.294 17 O -0.937 6.937 18 O -0.957 6.957 19 C -0.694 4.694 20 C -0.139 4.139 21 C -0.154 4.154 22 C -0.163 4.163 23 C -0.138 4.138 24 H 0.113 0.887 25 H 0.250 0.750 26 H 0.184 0.816 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.717 -9.814 -0.329 11.897 hybrid contribution -0.568 -0.626 0.358 0.918 sum 6.150 -10.440 0.030 12.116 Atomic orbital electron populations 1.80979 1.12292 1.11891 1.15774 1.24247 0.91049 0.90468 0.90337 1.12621 0.83646 0.96624 1.34907 1.25372 0.92727 0.91888 0.90633 1.81072 1.09846 1.12455 1.17381 1.16753 0.78721 0.89869 0.83100 1.19955 1.14300 1.10471 1.08943 0.85003 1.25933 0.96561 0.96817 0.94290 1.69459 1.28012 1.30494 1.06227 0.86184 0.80711 0.78741 0.81546 1.16937 1.19007 1.18126 1.53937 1.15415 1.37045 1.72417 1.05133 0.72861 0.76004 0.75368 1.93582 1.75549 1.85783 1.38791 1.93562 1.33565 1.81273 1.87341 1.31022 1.12466 1.15480 1.10417 1.22119 1.00901 0.98484 0.92424 1.22439 0.99928 0.96052 0.96978 1.22404 0.98673 1.00750 0.94520 1.21855 0.97829 0.96177 0.97958 0.88728 0.74956 0.81598 0.90879 0.88896 0.91010 0.91201 0.91140 0.91034 0.89552 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -13.03 18.54 41.84 0.78 -12.25 16 2 C 0.35 8.32 11.54 -22.47 -0.26 8.06 16 3 C -0.26 -5.74 5.40 -104.94 -0.57 -6.31 16 4 C 0.30 6.71 14.09 -22.49 -0.32 6.39 16 5 N -0.53 -11.98 18.53 41.81 0.77 -11.20 16 6 C 0.42 8.66 6.06 -83.60 -0.51 8.15 16 7 C -0.51 -10.20 5.38 -38.33 -0.21 -10.41 16 8 H 0.13 2.60 5.84 -52.48 -0.31 2.29 16 9 C 0.10 1.91 3.99 -17.21 -0.07 1.84 16 10 N -0.72 -14.89 11.22 55.59 0.62 -14.27 16 11 Si 0.91 16.19 29.61 -169.99 -5.03 11.16 16 12 H -0.25 -4.35 7.11 56.52 0.40 -3.95 16 13 H -0.27 -4.39 7.11 56.52 0.40 -3.99 16 14 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 15 N -1.05 -18.87 5.58 32.59 0.18 -18.69 16 16 S 2.61 43.92 4.12 -107.50 -0.44 43.48 16 17 O -0.95 -18.28 15.75 -57.54 -0.91 -19.19 16 18 O -0.97 -17.47 17.57 -57.54 -1.01 -18.49 16 19 C -0.58 -8.07 3.19 -25.61 -0.08 -8.15 16 20 C -0.10 -1.30 6.31 -25.03 -0.16 -1.46 16 21 C -0.12 -1.22 6.91 -24.69 -0.17 -1.39 16 22 C -0.13 -1.27 6.83 -25.07 -0.17 -1.44 16 23 C -0.10 -1.14 6.48 -25.61 -0.17 -1.31 16 24 H 0.30 5.79 8.29 -40.82 -0.34 5.45 16 25 H 0.42 7.14 7.63 -34.47 -0.26 6.88 16 26 H 0.17 2.36 6.20 -51.93 -0.32 2.04 16 27 H 0.07 0.93 7.40 -51.93 -0.38 0.55 16 28 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.67 7.59 -51.93 -0.39 0.28 16 LS Contribution 310.23 15.07 4.68 4.68 Total: -1.00 -27.23 310.23 -6.37 -33.60 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.34 Total: 7.19 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.67 Total: -6.02 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 2.36 Total: -56.42 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.92 Total: -37.67 kcal Atomic # 14 Polarization: 16.19 SS G_CDS: -5.03 Total: 11.16 kcal Atomic # 16 Polarization: 43.92 SS G_CDS: -0.44 Total: 43.48 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.23 -6.37 -33.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259804437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.061 kcal (2) G-P(sol) polarization free energy of solvation -27.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds