Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.43205 * 119.99957 * 207.70883 * 3 2 1 5 5 N 3.51038 * 140.69153 * 207.71135 * 2 1 3 6 6 C 1.41159 * 119.99996 * 27.70569 * 3 2 1 7 7 C 1.38983 * 119.99723 * 353.96966 * 6 3 2 8 8 H 1.08003 * 119.99506 * 138.37711 * 7 6 3 9 9 C 1.40822 * 120.00032 * 318.37199 * 7 6 3 10 10 N 1.30333 * 120.00243 * 340.08550 * 9 7 6 11 11 Si 1.86796 * 119.99771 * 160.09096 * 9 7 6 12 12 H 1.48500 * 109.47143 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47617 * 119.99896 * 11 9 7 14 14 H 1.48507 * 109.46781 * 240.00136 * 11 9 7 15 15 N 1.38225 * 119.99713 * 173.96780 * 6 3 2 16 16 S 1.65603 * 119.99935 * 183.51189 * 15 6 3 17 17 O 1.42095 * 104.27755 * 52.82542 * 16 15 6 18 18 O 1.42097 * 104.27888 * 180.68228 * 16 15 6 19 19 C 1.81398 * 104.44680 * 296.75352 * 16 15 6 20 20 C 1.54261 * 110.03523 * 299.55904 * 19 16 15 21 21 C 1.54963 * 104.16342 * 217.13819 * 20 19 16 22 22 C 1.54896 * 102.77667 * 37.88567 * 21 20 19 23 23 C 1.53877 * 110.03093 * 182.33830 * 19 16 15 24 24 H 0.96998 * 120.00001 * 185.07337 * 10 9 7 25 25 H 0.97005 * 120.00392 * 3.50722 * 15 6 3 26 26 H 1.09003 * 110.01868 * 60.95198 * 19 16 15 27 27 H 1.09004 * 110.48731 * 335.78487 * 20 19 16 28 28 H 1.08995 * 110.49016 * 98.42690 * 20 19 16 29 29 H 1.09000 * 110.71874 * 279.57608 * 21 20 19 30 30 H 1.09001 * 110.92718 * 156.29545 * 21 20 19 31 31 H 1.08996 * 110.48560 * 203.40812 * 22 21 20 32 32 H 1.09000 * 110.59949 * 80.82202 * 22 21 20 33 33 H 1.08996 * 110.03409 * 238.56765 * 23 19 16 34 34 H 1.08995 * 110.03394 * 359.95604 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2836 1.0989 0.5767 5 7 3.8522 1.9687 1.0341 6 6 3.2743 -1.0814 -0.5684 7 6 2.5856 -2.2031 -1.0145 8 1 2.8654 -2.6736 -1.9455 9 6 1.5231 -2.7262 -0.2525 10 7 1.4232 -2.4334 1.0136 11 14 0.2571 -3.8399 -1.0563 12 1 0.5932 -4.0159 -2.4921 13 1 0.2611 -5.1623 -0.3809 14 1 -1.0898 -3.2262 -0.9353 15 7 4.6508 -1.0251 -0.6812 16 16 5.4714 -2.2555 -1.4264 17 8 4.8263 -2.3954 -2.6847 18 8 6.8360 -1.8683 -1.3418 19 6 5.1557 -3.7063 -0.3843 20 6 5.6899 -3.4592 1.0416 21 6 6.2507 -4.8356 1.4802 22 6 6.8866 -5.3778 0.1760 23 6 5.9158 -4.9259 -0.9345 24 1 0.7354 -2.8512 1.5552 25 1 5.1362 -0.2650 -0.3241 26 1 4.0866 -3.9165 -0.3513 27 1 6.4827 -2.7113 1.0277 28 1 4.8817 -3.1473 1.7031 29 1 5.4470 -5.4893 1.8188 30 1 7.0052 -4.7185 2.2582 31 1 6.9515 -6.4653 0.2068 32 1 7.8736 -4.9419 0.0206 33 1 5.2158 -5.7282 -1.1676 34 1 6.4737 -4.6462 -1.8280 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259804437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = -49.706098 kcal Electronic energy + Delta-G solvation = -22158.944453 eV Core-core repulsion = 18796.556456 eV Total energy + Delta-G solvation = -3362.387997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.31831 -38.84024 -38.08388 -37.08608 -36.75703 -36.56034 -35.12763 -31.37206 -30.06683 -29.65186 -28.73106 -23.70761 -22.22310 -21.63561 -21.03754 -19.86908 -19.64842 -18.39662 -18.13015 -17.48464 -16.87474 -16.66731 -16.18969 -15.21559 -15.03973 -14.83824 -14.38852 -14.32912 -14.06991 -13.86971 -13.68631 -13.54894 -13.40053 -13.32561 -13.27322 -13.11558 -12.89182 -12.78897 -12.67826 -12.61307 -12.14598 -12.06718 -11.97724 -11.88906 -11.77958 -11.44081 -11.24319 -11.01383 -9.08610 -8.95435 -7.16758 -0.74587 0.70346 1.39486 1.43165 1.56582 1.59530 1.98687 2.09557 2.26384 2.51681 2.61116 2.77096 3.13899 3.40893 3.48568 3.64591 3.77275 4.00151 4.22818 4.34261 4.44463 4.52424 4.59292 4.63107 4.82187 4.88514 4.89483 5.09207 5.19852 5.26250 5.29318 5.33136 5.51061 5.71730 6.07430 6.27135 6.40458 7.07286 7.40092 7.89399 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.008179 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.435382 B = 3422.714908 C = 4338.329519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.351 3.649 3 C -0.281 4.281 4 C 0.308 3.692 5 N -0.541 5.541 6 C 0.428 3.572 7 C -0.503 4.503 8 H 0.139 0.861 9 C 0.075 3.925 10 N -0.735 5.735 11 Si 0.944 3.056 12 H -0.242 1.242 13 H -0.237 1.237 14 H -0.282 1.282 15 N -1.045 6.045 16 S 2.603 3.397 17 O -0.975 6.975 18 O -0.982 6.982 19 C -0.562 4.562 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.108 4.108 24 H 0.307 0.693 25 H 0.418 0.582 26 H 0.166 0.834 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.799 -13.596 -0.137 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.236 5.236 2 C 0.043 3.957 3 C -0.301 4.301 4 C 0.001 3.999 5 N -0.224 5.224 6 C 0.319 3.681 7 C -0.534 4.534 8 H 0.156 0.844 9 C -0.156 4.156 10 N -0.354 5.354 11 Si 0.764 3.236 12 H -0.165 1.165 13 H -0.160 1.160 14 H -0.208 1.208 15 N -0.785 5.785 16 S 2.704 3.296 17 O -0.966 6.966 18 O -0.973 6.973 19 C -0.677 4.677 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.162 4.162 23 C -0.148 4.148 24 H 0.119 0.881 25 H 0.253 0.747 26 H 0.184 0.816 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.350 -12.227 -0.126 14.267 hybrid contribution -0.721 0.066 0.297 0.782 sum 6.630 -12.161 0.170 13.851 Atomic orbital electron populations 1.80963 1.12856 1.12683 1.17072 1.24522 0.91403 0.89961 0.89835 1.12691 0.83144 0.97504 1.36784 1.25375 0.92481 0.91706 0.90307 1.81062 1.10261 1.12834 1.18239 1.16767 0.79571 0.89463 0.82318 1.20179 1.14307 1.09991 1.08940 0.84380 1.26422 0.97152 0.97596 0.94422 1.69467 1.28362 1.30621 1.06964 0.85631 0.77637 0.78789 0.81540 1.16479 1.16036 1.20792 1.53929 1.14608 1.37907 1.72044 1.05355 0.72242 0.76655 0.75386 1.93539 1.75794 1.86278 1.40945 1.93536 1.34134 1.81989 1.87625 1.30853 1.12932 1.13838 1.10042 1.22233 1.00731 1.00268 0.91510 1.22474 1.00552 0.94337 0.97713 1.22456 0.98106 1.02369 0.93278 1.22087 0.98606 0.95454 0.98644 0.88083 0.74733 0.81627 0.91075 0.89746 0.90171 0.89757 0.88610 0.90955 0.87395 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -27.37 18.54 19.00 0.35 -27.02 16 2 C 0.35 16.79 11.54 88.33 1.02 17.81 16 3 C -0.28 -12.53 5.40 -20.07 -0.11 -12.64 16 4 C 0.31 13.78 14.09 88.34 1.25 15.03 16 5 N -0.54 -24.74 18.53 19.00 0.35 -24.38 16 6 C 0.43 17.37 6.06 39.03 0.24 17.60 16 7 C -0.50 -19.82 5.38 23.08 0.12 -19.69 16 8 H 0.14 5.28 5.84 -2.91 -0.02 5.27 16 9 C 0.07 2.89 3.99 85.55 0.34 3.23 16 10 N -0.73 -29.52 11.22 21.98 0.25 -29.27 16 11 Si 0.94 31.49 29.61 68.60 2.03 33.52 16 12 H -0.24 -7.88 7.11 99.48 0.71 -7.17 16 13 H -0.24 -6.86 7.11 99.48 0.71 -6.15 16 14 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 15 N -1.05 -37.54 5.58 -50.80 -0.28 -37.83 16 16 S 2.60 85.88 4.12 -56.49 -0.23 85.65 16 17 O -0.98 -37.16 15.75 -127.65 -2.01 -39.17 16 18 O -0.98 -35.03 17.57 -127.65 -2.24 -37.27 16 19 C -0.56 -14.49 3.19 31.32 0.10 -14.39 16 20 C -0.11 -2.60 6.31 31.69 0.20 -2.40 16 21 C -0.11 -2.02 6.91 31.91 0.22 -1.80 16 22 C -0.12 -2.06 6.83 31.67 0.22 -1.85 16 23 C -0.11 -2.19 6.48 31.32 0.20 -1.98 16 24 H 0.31 11.47 8.29 -92.71 -0.77 10.70 16 25 H 0.42 14.48 7.63 -96.74 -0.74 13.74 16 26 H 0.17 4.36 6.20 -2.39 -0.01 4.35 16 27 H 0.07 1.72 7.40 -2.39 -0.02 1.71 16 28 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.25 7.59 -2.39 -0.02 1.24 16 Total: -1.00 -56.81 310.23 2.44 -54.37 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.43 Total: 22.48 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 3.80 Total: -1.08 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: 0.67 Total: -118.50 kcal Atomic # 8 Polarization: -72.19 SS G_CDS: -4.25 Total: -76.44 kcal Atomic # 14 Polarization: 31.49 SS G_CDS: 2.03 Total: 33.52 kcal Atomic # 16 Polarization: 85.88 SS G_CDS: -0.23 Total: 85.65 kcal Total: -56.81 2.44 -54.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259804437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.665 kcal (2) G-P(sol) polarization free energy of solvation -56.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds