Wall clock time and date at job start Tue Mar 31 2020 07:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48507 * 109.47028 * 174.64119 * 3 2 1 5 5 H 1.48504 * 109.47154 * 294.64217 * 3 2 1 6 6 H 1.48497 * 109.47000 * 54.64275 * 3 2 1 7 7 C 1.37878 * 120.00086 * 180.02562 * 2 1 3 8 8 C 1.51279 * 120.84787 * 164.53526 * 7 2 1 9 9 C 1.53224 * 108.53604 * 231.34531 * 8 7 2 10 10 C 1.52962 * 109.40850 * 305.37643 * 9 8 7 11 11 H 1.09006 * 109.40849 * 303.49719 * 10 9 8 12 12 N 1.46493 * 109.41309 * 183.70299 * 10 9 8 13 13 S 1.65610 * 119.99844 * 94.64744 * 12 10 9 14 14 O 1.42095 * 104.27489 * 181.06738 * 13 12 10 15 15 O 1.42096 * 104.27702 * 308.92747 * 13 12 10 16 16 C 1.81409 * 104.44760 * 64.99963 * 13 12 10 17 17 C 1.53000 * 109.46780 * 179.97438 * 16 13 12 18 18 C 1.52998 * 109.47024 * 179.97438 * 17 16 13 19 19 Cl 1.80294 * 109.47284 * 179.97438 * 18 17 16 20 20 C 1.52957 * 109.81560 * 63.59586 * 10 9 8 21 21 C 1.51295 * 120.84410 * 344.53894 * 7 2 1 22 22 H 0.97004 * 120.00304 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.62091 * 111.63327 * 8 7 2 24 24 H 1.09002 * 109.78214 * 351.15785 * 8 7 2 25 25 H 1.08998 * 109.48159 * 185.39438 * 9 8 7 26 26 H 1.08995 * 109.49432 * 65.36447 * 9 8 7 27 27 H 0.96993 * 120.00471 * 274.64464 * 12 10 9 28 28 H 1.09002 * 109.46969 * 299.99607 * 16 13 12 29 29 H 1.09000 * 109.47161 * 59.99764 * 16 13 12 30 30 H 1.08995 * 109.47145 * 299.99998 * 17 16 13 31 31 H 1.09009 * 109.47232 * 60.00062 * 17 16 13 32 32 H 1.09001 * 109.47492 * 300.00665 * 18 17 16 33 33 H 1.09000 * 109.46672 * 59.99942 * 18 17 16 34 34 H 1.09005 * 109.48545 * 56.38668 * 20 10 9 35 35 H 1.08997 * 109.47917 * 176.40940 * 20 10 9 36 36 H 1.09000 * 109.64147 * 8.94159 * 21 7 2 37 37 H 1.08999 * 109.61996 * 248.36413 * 21 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7038 1.3495 0.1308 5 1 1.9909 2.3384 -1.2726 6 1 1.7948 2.4515 1.1418 7 6 2.0045 -1.1940 -0.0005 8 6 3.4764 -1.2398 -0.3469 9 6 3.6895 -2.3042 -1.4282 10 6 3.1129 -3.6377 -0.9495 11 1 3.5742 -3.9120 -0.0007 12 7 3.3946 -4.6752 -1.9445 13 16 4.7329 -5.6370 -1.7818 14 8 4.6931 -6.4881 -2.9190 15 8 5.8017 -4.7205 -1.5896 16 6 4.4271 -6.5854 -0.2659 17 6 5.6074 -7.5232 -0.0044 18 6 5.3498 -8.3227 1.2744 19 17 6.7402 -9.4284 1.5823 20 6 1.6002 -3.5108 -0.7614 21 6 1.3081 -2.4920 0.3452 22 1 -0.4851 0.8401 0.0004 23 1 4.0534 -1.4990 0.5408 24 1 3.7976 -0.2678 -0.7214 25 1 4.7562 -2.4178 -1.6212 26 1 3.1849 -1.9980 -2.3445 27 1 2.7973 -4.7990 -2.6986 28 1 4.3136 -5.9006 0.5745 29 1 3.5160 -7.1723 -0.3821 30 1 5.7205 -8.2080 -0.8448 31 1 6.5188 -6.9367 0.1116 32 1 5.2368 -7.6377 2.1147 33 1 4.4384 -8.9092 1.1588 34 1 1.1448 -3.1759 -1.6934 35 1 1.1862 -4.4796 -0.4821 36 1 0.2333 -2.3241 0.4139 37 1 1.6845 -2.8671 1.2969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260058905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:05 Heat of formation + Delta-G solvation = -111.631030 kcal Electronic energy + Delta-G solvation = -20213.420619 eV Core-core repulsion = 16949.454849 eV Total energy + Delta-G solvation = -3263.965770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.080 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.64476 -36.91264 -36.65582 -35.86476 -34.67226 -33.75642 -31.31898 -29.69025 -27.70586 -26.93653 -22.47811 -22.15843 -21.56398 -19.67265 -19.14519 -17.53556 -16.66314 -16.45822 -16.04375 -15.65084 -14.69665 -14.49523 -14.43098 -13.76824 -13.52810 -13.29547 -12.95527 -12.61311 -12.44975 -12.27830 -12.22126 -12.03873 -11.91572 -11.68331 -11.36394 -11.27962 -11.15284 -10.97444 -10.72433 -10.70410 -10.52458 -10.21383 -9.98889 -9.77526 -9.28231 -8.98964 -8.60189 -8.37737 -6.19729 -4.04923 0.27263 1.89039 2.84947 3.23676 3.34603 3.38442 3.76344 4.10045 4.27858 4.35200 4.36210 4.42021 4.83115 4.97100 5.06775 5.17061 5.27056 5.36152 5.52375 5.76818 5.91370 5.99377 6.46339 6.56614 6.69700 6.84097 6.92787 7.00664 7.13172 7.29225 7.38461 7.58448 7.63679 7.74998 8.30901 8.89679 9.48829 10.89867 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.003696 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.554910 B = 7573.796589 C = 7899.241650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.496 4.496 8 C -0.015 4.015 9 C -0.123 4.123 10 C 0.162 3.838 11 H 0.069 0.931 12 N -1.113 6.113 13 S 2.611 3.389 14 O -0.968 6.968 15 O -0.949 6.949 16 C -0.640 4.640 17 C -0.122 4.122 18 C -0.024 4.024 19 Cl -0.186 7.186 20 C -0.112 4.112 21 C 0.011 3.989 22 H 0.264 0.736 23 H 0.015 0.985 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.414 0.586 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 -14.496 1.016 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.123 4.123 3 Si 0.706 3.294 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.515 4.515 8 C -0.053 4.053 9 C -0.163 4.163 10 C 0.057 3.943 11 H 0.087 0.913 12 N -0.873 5.873 13 S 2.703 3.297 14 O -0.958 6.958 15 O -0.939 6.939 16 C -0.768 4.768 17 C -0.161 4.161 18 C -0.088 4.088 19 Cl -0.159 7.159 20 C -0.152 4.152 21 C -0.027 4.027 22 H 0.074 0.926 23 H 0.034 0.966 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.249 0.751 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 7.781 -14.475 0.619 16.446 hybrid contribution -0.412 0.688 0.290 0.853 sum 7.368 -13.787 0.908 15.659 Atomic orbital electron populations 1.69901 1.06327 1.27029 1.48671 1.24813 0.94538 0.98701 0.94253 0.86776 0.81165 0.83663 0.77752 1.18449 1.20930 1.21196 1.20009 0.92535 0.92261 1.46716 1.19752 0.96824 0.94791 0.93935 1.22057 0.98637 0.95021 1.00553 1.20870 0.98354 0.86914 0.88179 0.91289 1.55755 1.46511 1.48126 1.36865 1.04905 0.74341 0.74607 0.75895 1.93579 1.86548 1.69208 1.46433 1.93624 1.53274 1.60441 1.86515 1.30732 1.07533 1.13452 1.25071 1.21598 0.97216 0.98264 0.99042 1.24347 0.90325 0.94493 0.99604 1.98729 1.51712 1.68753 1.96730 1.21946 0.92249 0.98605 1.02390 1.19393 0.99492 0.92222 0.91633 0.92606 0.96636 0.94627 0.93120 0.92450 0.75128 0.84354 0.84545 0.89165 0.88978 0.88150 0.88335 0.92208 0.94680 0.92203 0.97797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.29 12.81 55.43 0.71 -23.58 16 2 C 0.08 2.11 5.43 -17.82 -0.10 2.01 16 3 Si 0.88 20.29 27.63 -169.99 -4.70 15.60 16 4 H -0.26 -5.83 6.14 56.52 0.35 -5.48 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.50 -12.33 5.44 -98.90 -0.54 -12.87 16 8 C -0.01 -0.33 5.46 -27.48 -0.15 -0.48 16 9 C -0.12 -2.44 5.53 -26.63 -0.15 -2.58 16 10 C 0.16 2.75 2.45 -67.98 -0.17 2.58 16 11 H 0.07 1.08 7.14 -51.93 -0.37 0.70 16 12 N -1.11 -15.39 5.36 -4.93 -0.03 -15.42 16 13 S 2.61 33.93 5.38 -107.50 -0.58 33.35 16 14 O -0.97 -14.72 18.08 -57.54 -1.04 -15.76 16 15 O -0.95 -15.70 17.01 -57.54 -0.98 -16.68 16 16 C -0.64 -5.66 5.96 37.16 0.22 -5.44 16 17 C -0.12 -1.03 5.35 -26.73 -0.14 -1.18 16 18 C -0.02 -0.17 6.66 37.16 0.25 0.07 16 19 Cl -0.19 -1.70 29.15 -51.86 -1.51 -3.22 16 20 C -0.11 -2.08 5.46 -26.64 -0.15 -2.23 16 21 C 0.01 0.24 6.00 -27.47 -0.16 0.08 16 22 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.04 0.80 5.03 -51.93 -0.26 0.54 16 25 H 0.05 0.98 7.33 -51.93 -0.38 0.60 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.41 5.16 8.80 -34.47 -0.30 4.85 16 28 H 0.14 1.11 7.44 -51.92 -0.39 0.72 16 29 H 0.14 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 1.50 7.11 -51.93 -0.37 1.13 16 37 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -31.09 322.07 -9.84 -40.93 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.49 Total: -0.05 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.08 Total: -20.03 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.68 Total: -39.00 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -2.02 Total: -32.44 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.70 Total: 15.60 kcal Atomic # 16 Polarization: 33.93 SS G_CDS: -0.58 Total: 33.35 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -1.51 Total: -3.22 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.09 -9.84 -40.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260058905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.704 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds