Wall clock time and date at job start Tue Mar 31 2020 07:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29086 * 120.60048 * 2 1 4 4 S 1.69634 * 108.28407 * 179.97438 * 3 2 1 5 5 C 1.76593 * 95.43923 * 359.97438 * 4 3 2 6 6 N 1.33585 * 134.18904 * 179.97438 * 5 4 3 7 7 C 1.30252 * 121.71410 * 179.75474 * 6 5 4 8 8 N 1.35690 * 122.34062 * 0.55112 * 7 6 5 9 9 C 1.46506 * 119.54790 * 179.71327 * 8 7 6 10 10 C 1.52999 * 109.46967 * 269.72573 * 9 8 7 11 11 O 1.42899 * 109.46889 * 65.00094 * 10 9 8 12 12 C 1.42905 * 113.99778 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46972 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00302 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99832 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47310 * 89.99428 * 17 15 13 19 19 H 1.48491 * 109.47296 * 209.99911 * 17 15 13 20 20 H 1.48502 * 109.46905 * 329.99956 * 17 15 13 21 21 C 1.34955 * 120.89988 * 359.43637 * 8 7 6 22 22 O 1.21836 * 121.00271 * 180.29924 * 21 8 7 23 23 C 1.39790 * 120.59480 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47527 * 270.02488 * 1 2 3 25 25 H 1.09006 * 109.47016 * 30.01752 * 1 2 3 26 26 H 1.09000 * 109.47822 * 150.02182 * 1 2 3 27 27 H 1.08004 * 118.82967 * 180.26606 * 7 6 5 28 28 H 1.09004 * 109.46913 * 149.72807 * 9 8 7 29 29 H 1.08993 * 109.46958 * 29.73020 * 9 8 7 30 30 H 1.08997 * 109.47286 * 305.00078 * 10 9 8 31 31 H 1.08997 * 109.46848 * 185.00176 * 10 9 8 32 32 H 1.09000 * 109.47187 * 300.00233 * 12 11 10 33 33 H 1.09001 * 109.46558 * 60.00281 * 12 11 10 34 34 H 0.97002 * 119.99998 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1640 1.1111 0.0000 4 16 3.8213 0.7492 0.0007 5 6 3.6099 -1.0040 0.0018 6 7 4.4494 -2.0431 0.0023 7 6 4.0177 -3.2720 0.0079 8 7 2.6956 -3.5770 0.0025 9 6 2.2781 -4.9813 0.0029 10 6 2.1326 -5.4705 -1.4395 11 8 3.4107 -5.4563 -2.0785 12 6 3.3861 -5.8983 -3.4372 13 6 4.7795 -5.8431 -4.0086 14 1 5.6015 -5.5040 -3.3956 15 6 5.0048 -6.2246 -5.3142 16 7 6.2207 -6.1760 -5.8131 17 14 3.5827 -6.8092 -6.3751 18 1 2.9807 -5.6486 -7.0794 19 1 4.0800 -7.7901 -7.3729 20 1 2.5568 -7.4536 -5.5164 21 6 1.7600 -2.6045 0.0023 22 8 0.5723 -2.8762 0.0029 23 6 2.2184 -1.2033 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3635 -0.8901 -0.5135 27 1 4.7379 -4.0769 0.0124 28 1 1.3215 -5.0758 0.5168 29 1 3.0276 -5.5830 0.5168 30 1 1.4495 -4.8142 -1.9786 31 1 1.7371 -6.4862 -1.4405 32 1 3.0168 -6.9230 -3.4793 33 1 2.7289 -5.2511 -4.0179 34 1 6.3792 -6.4447 -6.7315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307334754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:57 Heat of formation + Delta-G solvation = -15.889229 kcal Electronic energy + Delta-G solvation = -21109.271337 eV Core-core repulsion = 17748.349750 eV Total energy + Delta-G solvation = -3360.921588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.81230 -38.62570 -37.80986 -37.20547 -34.85879 -32.76268 -30.59708 -30.24764 -29.63303 -27.82151 -25.30639 -24.52299 -22.50558 -22.00548 -20.66100 -19.28304 -17.98162 -17.74174 -17.07228 -16.77932 -16.17151 -15.80796 -15.06142 -14.81741 -14.60515 -14.43720 -14.24209 -13.77496 -13.44463 -13.35061 -12.87515 -12.63825 -12.59252 -12.22791 -11.91994 -11.81320 -11.47353 -11.06312 -10.94466 -10.89264 -10.35908 -10.24227 -10.09462 -9.99676 -9.36594 -9.11446 -8.97308 -8.66137 -8.40767 -6.23451 -4.24247 -0.08027 0.87394 1.44633 1.66629 1.92598 2.19179 3.16456 3.23431 3.24291 3.26018 3.87066 4.15822 4.23833 4.26345 4.38178 4.58611 4.86498 4.90054 5.01425 5.08002 5.17760 5.41240 5.44331 5.48745 5.55081 5.71978 5.96161 6.06441 6.18220 6.39929 6.53121 6.80723 7.42364 7.45852 7.52888 7.72754 8.45794 8.84885 9.34553 10.89082 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.004172 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.866494 B = 6710.261727 C = 7153.244433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.196 3.804 3 N -0.471 5.471 4 S 0.277 5.723 5 C 0.118 3.882 6 N -0.510 5.510 7 C 0.442 3.558 8 N -0.524 5.524 9 C 0.098 3.902 10 C 0.038 3.962 11 O -0.385 6.385 12 C 0.173 3.827 13 C -0.524 4.524 14 H 0.084 0.916 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.874 3.126 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.266 1.266 21 C 0.573 3.427 22 O -0.513 6.513 23 C -0.307 4.307 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.222 0.778 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.007 0.993 33 H -0.002 1.002 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 6.665 14.640 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.016 3.984 3 N -0.290 5.290 4 S 0.430 5.570 5 C -0.126 4.126 6 N -0.233 5.233 7 C 0.152 3.848 8 N -0.243 5.243 9 C -0.024 4.024 10 C -0.040 4.040 11 O -0.305 6.305 12 C 0.098 3.902 13 C -0.562 4.562 14 H 0.102 0.898 15 C -0.127 4.127 16 N -0.528 5.528 17 Si 0.700 3.300 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.191 1.191 21 C 0.365 3.635 22 O -0.388 6.388 23 C -0.329 4.329 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.238 0.762 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.024 0.976 33 H 0.016 0.984 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.587 9.013 14.545 18.718 hybrid contribution -2.275 -2.191 -1.032 3.323 sum -9.862 6.822 13.513 18.066 Atomic orbital electron populations 1.20769 0.86047 1.04604 1.03948 1.20686 0.98995 0.86450 0.92307 1.76400 1.00255 1.24512 1.27844 1.85002 1.09000 0.91817 1.71155 1.25084 0.91811 1.01363 0.94344 1.67669 1.34088 0.96212 1.25301 1.25446 0.83559 0.94668 0.81126 1.46660 1.07643 1.10178 1.59776 1.22261 1.04037 0.77521 0.98564 1.22701 0.88972 1.00372 0.91971 1.87816 1.26097 1.87929 1.28646 1.20629 0.98889 0.93019 0.77662 1.20811 0.92359 1.45420 0.97603 0.89822 1.24741 0.95724 0.94968 0.97276 1.69859 1.19981 1.47381 1.15603 0.86889 0.82875 0.79333 0.80876 1.19918 1.20604 1.19114 1.17514 0.85514 0.83826 0.76619 1.90856 1.14782 1.83318 1.49809 1.21486 0.93301 0.95105 1.22995 0.89702 0.90290 0.88661 0.76156 0.86826 0.87171 0.93300 0.91641 0.97558 0.98419 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.85 36.00 0.35 -0.69 16 2 C 0.20 2.74 6.70 -83.17 -0.56 2.19 16 3 N -0.47 -6.71 11.91 32.76 0.39 -6.32 16 4 S 0.28 3.69 23.91 -107.50 -2.57 1.12 16 5 C 0.12 1.74 7.96 -15.91 -0.13 1.62 16 6 N -0.51 -7.33 10.37 -12.35 -0.13 -7.46 16 7 C 0.44 5.49 10.93 -89.99 -0.98 4.50 16 8 N -0.52 -6.69 2.57 -118.74 -0.31 -7.00 16 9 C 0.10 1.03 5.78 -4.04 -0.02 1.01 16 10 C 0.04 0.55 6.28 37.16 0.23 0.78 16 11 O -0.39 -7.47 9.78 -35.23 -0.34 -7.82 16 12 C 0.17 4.02 4.76 36.01 0.17 4.19 16 13 C -0.52 -14.56 9.99 -34.44 -0.34 -14.90 16 14 H 0.08 2.52 8.06 -52.48 -0.42 2.09 16 15 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 17 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -5.96 6.54 56.52 0.37 -5.60 16 21 C 0.57 8.44 7.67 -12.44 -0.10 8.34 16 22 O -0.51 -8.06 14.75 5.07 0.07 -7.99 16 23 C -0.31 -4.57 6.07 -104.70 -0.64 -5.21 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.16 6.46 -51.93 -0.34 0.83 16 27 H 0.22 2.09 8.00 -52.48 -0.42 1.67 16 28 H 0.11 1.05 7.43 -51.93 -0.39 0.66 16 29 H 0.11 0.83 7.99 -51.93 -0.41 0.42 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.01 0.15 7.20 -51.93 -0.37 -0.22 16 33 H 0.00 -0.04 7.57 -51.93 -0.39 -0.44 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -32.96 310.51 -7.81 -40.77 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -3.60 Total: -4.09 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -2.10 Total: 3.86 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.73 Total: -46.48 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.27 Total: -15.80 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.57 Total: 1.12 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.96 -7.81 -40.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307334754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.880 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds