Wall clock time and date at job start Tue Mar 31 2020 07:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29086 * 120.60048 * 2 1 4 4 S 1.69634 * 108.28407 * 179.97438 * 3 2 1 5 5 C 1.76593 * 95.43923 * 359.97438 * 4 3 2 6 6 N 1.33585 * 134.18904 * 179.97438 * 5 4 3 7 7 C 1.30252 * 121.71410 * 179.75474 * 6 5 4 8 8 N 1.35690 * 122.34062 * 0.55112 * 7 6 5 9 9 C 1.46506 * 119.54790 * 179.71327 * 8 7 6 10 10 C 1.52999 * 109.46967 * 269.72573 * 9 8 7 11 11 O 1.42899 * 109.46889 * 65.00094 * 10 9 8 12 12 C 1.42905 * 113.99778 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46972 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00302 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99832 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47310 * 89.99428 * 17 15 13 19 19 H 1.48491 * 109.47296 * 209.99911 * 17 15 13 20 20 H 1.48502 * 109.46905 * 329.99956 * 17 15 13 21 21 C 1.34955 * 120.89988 * 359.43637 * 8 7 6 22 22 O 1.21836 * 121.00271 * 180.29924 * 21 8 7 23 23 C 1.39790 * 120.59480 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47527 * 270.02488 * 1 2 3 25 25 H 1.09006 * 109.47016 * 30.01752 * 1 2 3 26 26 H 1.09000 * 109.47822 * 150.02182 * 1 2 3 27 27 H 1.08004 * 118.82967 * 180.26606 * 7 6 5 28 28 H 1.09004 * 109.46913 * 149.72807 * 9 8 7 29 29 H 1.08993 * 109.46958 * 29.73020 * 9 8 7 30 30 H 1.08997 * 109.47286 * 305.00078 * 10 9 8 31 31 H 1.08997 * 109.46848 * 185.00176 * 10 9 8 32 32 H 1.09000 * 109.47187 * 300.00233 * 12 11 10 33 33 H 1.09001 * 109.46558 * 60.00281 * 12 11 10 34 34 H 0.97002 * 119.99998 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1640 1.1111 0.0000 4 16 3.8213 0.7492 0.0007 5 6 3.6099 -1.0040 0.0018 6 7 4.4494 -2.0431 0.0023 7 6 4.0177 -3.2720 0.0079 8 7 2.6956 -3.5770 0.0025 9 6 2.2781 -4.9813 0.0029 10 6 2.1326 -5.4705 -1.4395 11 8 3.4107 -5.4563 -2.0785 12 6 3.3861 -5.8983 -3.4372 13 6 4.7795 -5.8431 -4.0086 14 1 5.6015 -5.5040 -3.3956 15 6 5.0048 -6.2246 -5.3142 16 7 6.2207 -6.1760 -5.8131 17 14 3.5827 -6.8092 -6.3751 18 1 2.9807 -5.6486 -7.0794 19 1 4.0800 -7.7901 -7.3729 20 1 2.5568 -7.4536 -5.5164 21 6 1.7600 -2.6045 0.0023 22 8 0.5723 -2.8762 0.0029 23 6 2.2184 -1.2033 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8899 -0.5141 26 1 -0.3635 -0.8901 -0.5135 27 1 4.7379 -4.0769 0.0124 28 1 1.3215 -5.0758 0.5168 29 1 3.0276 -5.5830 0.5168 30 1 1.4495 -4.8142 -1.9786 31 1 1.7371 -6.4862 -1.4405 32 1 3.0168 -6.9230 -3.4793 33 1 2.7289 -5.2511 -4.0179 34 1 6.3792 -6.4447 -6.7315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307334754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:56 Heat of formation + Delta-G solvation = -37.934019 kcal Electronic energy + Delta-G solvation = -21110.227271 eV Core-core repulsion = 17748.349750 eV Total energy + Delta-G solvation = -3361.877522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.86612 -39.70436 -38.91925 -38.61680 -35.99743 -34.80859 -31.67687 -31.51278 -30.62203 -29.56709 -26.35677 -25.63228 -24.05197 -23.46895 -21.68844 -20.33659 -19.19424 -18.95874 -18.77025 -17.85159 -17.38733 -17.30075 -16.48791 -16.20432 -15.84853 -15.66300 -15.35475 -14.82960 -14.79876 -14.57440 -14.42017 -13.92951 -13.58938 -13.35837 -13.24697 -12.91748 -12.82293 -12.76905 -12.57320 -12.01701 -11.85343 -11.46597 -11.37833 -11.33472 -11.16503 -10.94013 -10.44845 -10.06201 -9.47527 -8.36986 -6.44079 -1.14285 -0.18648 0.34670 0.61477 0.87066 1.19182 1.33311 1.33886 1.44093 2.17805 2.27615 2.84206 2.95942 2.96683 3.15680 3.31538 3.65585 3.85066 3.94325 4.11448 4.21448 4.38762 4.49053 4.51180 4.56735 4.61603 4.70683 4.96605 5.04998 5.09996 5.17064 5.42846 5.49165 5.89033 6.39818 6.45238 6.56768 6.67330 7.19899 8.79251 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.004172 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.866494 B = 6710.261727 C = 7153.244433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.190 3.810 3 N -0.484 5.484 4 S 0.290 5.710 5 C 0.106 3.894 6 N -0.530 5.530 7 C 0.444 3.556 8 N -0.524 5.524 9 C 0.101 3.899 10 C 0.032 3.968 11 O -0.396 6.396 12 C 0.183 3.817 13 C -0.539 4.539 14 H 0.042 0.958 15 C 0.017 3.983 16 N -0.939 5.939 17 Si 0.944 3.056 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.241 1.241 21 C 0.569 3.431 22 O -0.526 6.526 23 C -0.326 4.326 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.250 0.750 28 H 0.134 0.866 29 H 0.148 0.852 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.021 0.979 33 H -0.003 1.003 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.528 5.604 15.194 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.010 3.990 3 N -0.304 5.304 4 S 0.444 5.556 5 C -0.139 4.139 6 N -0.253 5.253 7 C 0.156 3.844 8 N -0.241 5.241 9 C -0.019 4.019 10 C -0.046 4.046 11 O -0.316 6.316 12 C 0.107 3.893 13 C -0.577 4.577 14 H 0.060 0.940 15 C -0.182 4.182 16 N -0.579 5.579 17 Si 0.766 3.234 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.165 1.165 21 C 0.362 3.638 22 O -0.402 6.402 23 C -0.348 4.348 24 H 0.119 0.881 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.265 0.735 28 H 0.152 0.848 29 H 0.165 0.835 30 H 0.051 0.949 31 H 0.109 0.891 32 H 0.038 0.962 33 H 0.015 0.985 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.434 7.941 15.132 19.520 hybrid contribution -1.634 -1.828 -1.120 2.695 sum -11.068 6.113 14.012 18.874 Atomic orbital electron populations 1.20808 0.84373 1.04722 1.04998 1.21022 1.00184 0.86101 0.91710 1.76372 1.00686 1.24837 1.28494 1.84873 1.08703 0.91138 1.70932 1.25319 0.92097 1.02055 0.94398 1.67679 1.34550 0.96873 1.26229 1.26018 0.83904 0.94775 0.79719 1.46747 1.07427 1.10782 1.59156 1.22492 1.06498 0.76449 0.96449 1.23000 0.86484 1.01791 0.93312 1.87766 1.29176 1.87866 1.26753 1.20283 0.95725 0.93724 0.79580 1.21125 0.93766 1.45038 0.97746 0.93969 1.25711 0.98654 0.95006 0.98823 1.70012 1.22637 1.48892 1.16314 0.85775 0.79534 0.79047 0.79027 1.19513 1.19994 1.16469 1.17588 0.85636 0.84138 0.76485 1.90839 1.15247 1.83594 1.50568 1.21700 0.93546 0.95738 1.23781 0.88109 0.89011 0.89554 0.73462 0.84848 0.83452 0.94900 0.89095 0.96181 0.98510 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 9.85 71.23 0.70 -1.19 16 2 C 0.19 5.22 6.70 43.34 0.29 5.51 16 3 N -0.48 -13.60 11.91 -50.27 -0.60 -14.20 16 4 S 0.29 7.71 23.91 -56.49 -1.35 6.36 16 5 C 0.11 3.09 7.96 84.99 0.68 3.77 16 6 N -0.53 -14.97 10.37 -192.99 -2.00 -16.97 16 7 C 0.44 10.41 10.93 180.13 1.97 12.38 16 8 N -0.52 -12.37 2.57 -647.65 -1.67 -14.04 16 9 C 0.10 1.81 5.78 86.38 0.50 2.31 16 10 C 0.03 0.82 6.28 71.98 0.45 1.27 16 11 O -0.40 -14.62 9.78 -148.98 -1.46 -16.07 16 12 C 0.18 8.18 4.76 71.24 0.34 8.52 16 13 C -0.54 -30.16 9.99 25.60 0.26 -29.91 16 14 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16 15 C 0.02 0.93 5.47 84.65 0.46 1.39 16 16 N -0.94 -56.84 13.96 21.45 0.30 -56.54 16 17 Si 0.94 41.60 27.47 68.60 1.88 43.49 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 21 C 0.57 16.10 7.67 86.64 0.66 16.76 16 22 O -0.53 -15.84 14.75 -4.79 -0.07 -15.91 16 23 C -0.33 -9.55 6.07 -19.91 -0.12 -9.67 16 24 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.09 2.04 6.46 -2.39 -0.02 2.02 16 27 H 0.25 4.18 8.00 -2.91 -0.02 4.16 16 28 H 0.13 1.97 7.43 -2.38 -0.02 1.95 16 29 H 0.15 1.58 7.99 -2.39 -0.02 1.56 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 33 H 0.00 -0.13 7.57 -2.39 -0.02 -0.14 16 34 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -72.19 310.51 2.31 -69.87 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 1.08 Total: 2.85 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 6.19 Total: 11.16 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -3.97 Total: -101.74 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.53 Total: -31.98 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.88 Total: 43.49 kcal Atomic # 16 Polarization: 7.71 SS G_CDS: -1.35 Total: 6.36 kcal Total: -72.19 2.31 -69.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307334754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.939 kcal (2) G-P(sol) polarization free energy of solvation -72.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds