Wall clock time and date at job start Tue Mar 31 2020 07:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39459 * 119.73547 * 260.28042 * 3 2 1 5 5 C 1.38496 * 119.05108 * 179.75211 * 4 3 2 6 6 C 1.50697 * 120.74899 * 180.28031 * 5 4 3 7 7 N 1.46507 * 109.47283 * 270.23854 * 6 5 4 8 8 S 1.65596 * 120.00172 * 164.99752 * 7 6 5 9 9 O 1.42102 * 104.27818 * 181.07258 * 8 7 6 10 10 O 1.42093 * 104.27700 * 308.93073 * 8 7 6 11 11 C 1.81401 * 104.44706 * 65.00167 * 8 7 6 12 12 C 1.53005 * 109.46960 * 180.02562 * 11 8 7 13 13 C 1.50703 * 109.46863 * 179.97438 * 12 11 8 14 14 H 1.07996 * 120.00020 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99829 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00134 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00092 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46985 * 89.99628 * 17 15 13 19 19 H 1.48496 * 109.47183 * 209.99539 * 17 15 13 20 20 H 1.48497 * 109.46785 * 329.99901 * 17 15 13 21 21 C 1.38695 * 118.50318 * 0.51603 * 5 4 3 22 22 C 1.38471 * 119.38447 * 359.74432 * 21 5 4 23 23 N 1.31586 * 120.91270 * 359.97438 * 22 21 5 24 24 H 1.07997 * 120.47560 * 359.97438 * 4 3 2 25 25 H 1.08997 * 109.46966 * 30.23622 * 6 5 4 26 26 H 1.08996 * 109.47092 * 150.23736 * 6 5 4 27 27 H 0.97009 * 119.99475 * 345.00127 * 7 6 5 28 28 H 1.08999 * 109.46929 * 299.99901 * 11 8 7 29 29 H 1.09000 * 109.47380 * 60.00184 * 11 8 7 30 30 H 1.08999 * 109.47207 * 299.99717 * 12 11 8 31 31 H 1.09000 * 109.46935 * 59.99897 * 12 11 8 32 32 H 0.96998 * 120.00727 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.31024 * 179.77388 * 21 5 4 34 34 H 1.07995 * 119.54422 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2596 0.2054 1.1936 5 6 4.6444 0.1981 1.1782 6 6 5.4302 0.4091 2.4466 7 7 5.6846 1.8400 2.6312 8 16 6.1927 2.4078 4.1015 9 8 6.3079 3.8117 3.9143 10 8 5.2608 1.8662 5.0274 11 6 7.8291 1.6603 4.3344 12 6 8.4106 2.1135 5.6751 13 6 9.7698 1.4920 5.8689 14 1 10.1781 0.8394 5.1114 15 6 10.4924 1.7573 7.0127 16 7 11.6782 1.2146 7.1821 17 14 9.7864 2.8867 8.3226 18 1 9.0066 2.0849 9.2995 19 1 10.8940 3.5826 9.0255 20 1 8.8974 3.8902 7.6840 21 6 5.2918 -0.0029 -0.0319 22 6 4.5419 -0.1943 -1.1801 23 7 3.2267 -0.1884 -1.1373 24 1 2.7230 0.3638 2.1173 25 1 4.8603 0.0290 3.2945 26 1 6.3791 -0.1229 2.3789 27 1 5.5554 2.4549 1.8921 28 1 7.7367 0.5742 4.3274 29 1 8.4902 1.9739 3.5266 30 1 8.5029 3.1995 5.6826 31 1 7.7494 1.7995 6.4827 32 1 12.1865 1.4010 7.9869 33 1 6.3708 -0.0105 -0.0781 34 1 5.0433 -0.3515 -2.1236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309957477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:48 Heat of formation + Delta-G solvation = -8.850501 kcal Electronic energy + Delta-G solvation = -20132.404432 eV Core-core repulsion = 16771.788066 eV Total energy + Delta-G solvation = -3360.616366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96082 -37.10198 -36.86044 -36.14350 -35.68642 -34.03317 -32.57331 -32.13924 -31.56179 -26.87849 -26.06459 -25.04816 -23.19496 -21.41416 -19.48982 -19.15205 -17.75114 -17.33908 -17.04302 -16.70434 -16.26232 -15.63550 -15.20807 -15.17100 -14.78094 -14.38346 -14.05569 -13.71864 -13.65262 -13.38532 -13.22332 -13.07632 -12.86341 -12.37705 -11.97566 -11.93297 -11.85983 -11.77152 -11.32871 -11.29100 -10.52645 -10.36596 -10.23513 -10.23202 -9.98210 -9.71341 -9.60446 -9.31802 -8.72188 -6.22489 -4.24400 0.04248 0.37216 0.68539 2.11738 2.34903 2.89777 3.04143 3.22237 3.30151 3.33519 3.41322 3.88901 4.02190 4.08982 4.30481 4.35574 4.45167 4.47160 4.64044 4.94527 4.99336 5.09160 5.15727 5.28841 5.32685 5.41539 5.59115 5.67547 5.94078 6.17885 6.73101 6.76435 6.86897 6.93102 7.20458 7.47995 8.29522 8.77977 9.37019 10.89744 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.003126 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.995627 B = 8954.744018 C = 9422.596005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C 0.267 3.733 3 C 0.188 3.812 4 C -0.101 4.101 5 C -0.048 4.048 6 C 0.152 3.848 7 N -1.124 6.124 8 S 2.589 3.411 9 O -0.962 6.962 10 O -0.964 6.964 11 C -0.581 4.581 12 C -0.008 4.008 13 C -0.521 4.521 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.869 3.131 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C -0.127 4.127 22 C 0.109 3.891 23 N -0.450 5.450 24 H 0.151 0.849 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.416 0.584 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.267 0.733 33 H 0.152 0.848 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.637 -3.441 -15.143 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.064 5.064 2 C -0.051 4.051 3 C 0.051 3.949 4 C -0.124 4.124 5 C -0.058 4.058 6 C 0.026 3.974 7 N -0.881 5.881 8 S 2.686 3.314 9 O -0.953 6.953 10 O -0.954 6.954 11 C -0.714 4.714 12 C -0.047 4.047 13 C -0.560 4.560 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.532 5.532 17 Si 0.695 3.305 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.186 1.186 21 C -0.148 4.148 22 C -0.051 4.051 23 N -0.161 5.161 24 H 0.169 0.831 25 H 0.117 0.883 26 H 0.106 0.894 27 H 0.249 0.751 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.221 -3.121 -15.070 20.955 hybrid contribution 1.209 0.464 0.823 1.534 sum -13.013 -2.657 -14.247 19.477 Atomic orbital electron populations 1.81267 1.11531 1.07033 1.06591 1.24970 0.91681 0.94430 0.93995 1.16300 0.86165 1.02129 0.90353 1.22077 0.94417 0.97185 0.98737 1.20252 0.93188 0.96558 0.95799 1.20270 0.99858 0.82145 0.95150 1.55856 1.85462 1.14311 1.32485 1.05706 0.78197 0.74757 0.72722 1.93579 1.87912 1.29375 1.84393 1.93555 1.59914 1.80408 1.61473 1.30288 1.18782 1.12695 1.09669 1.19422 0.98827 0.97748 0.88721 1.20827 0.99125 1.30098 1.05957 0.90383 1.24985 0.94645 0.95471 0.97980 1.69870 1.11789 1.43735 1.27843 0.86927 0.79398 0.81796 0.82336 1.19650 1.20751 1.18612 1.22494 1.02701 0.97195 0.92448 1.22845 0.88038 0.95144 0.99029 1.67539 1.10847 1.10487 1.27188 0.83097 0.88346 0.89429 0.75087 0.85608 0.85318 0.94886 0.95298 0.92317 0.83031 0.81112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.70 18.54 41.83 0.78 -3.92 16 2 C 0.27 2.70 15.53 -22.47 -0.35 2.35 16 3 C 0.19 1.58 6.58 -85.07 -0.56 1.02 16 4 C -0.10 -0.71 9.50 -39.03 -0.37 -1.08 16 5 C -0.05 -0.30 5.31 -104.36 -0.55 -0.86 16 6 C 0.15 1.08 6.30 -5.19 -0.03 1.05 16 7 N -1.12 -10.40 5.88 -11.66 -0.07 -10.47 16 8 S 2.59 37.41 5.46 -107.50 -0.59 36.82 16 9 O -0.96 -17.06 18.08 -57.54 -1.04 -18.10 16 10 O -0.96 -16.57 17.50 -57.54 -1.01 -17.58 16 11 C -0.58 -9.17 6.01 37.16 0.22 -8.95 16 12 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 13 C -0.52 -13.80 9.66 -34.44 -0.33 -14.13 16 14 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 17 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 21 C -0.13 -0.60 9.82 -39.33 -0.39 -0.98 16 22 C 0.11 0.58 11.18 -17.57 -0.20 0.39 16 23 N -0.45 -3.71 10.28 -11.16 -0.11 -3.82 16 24 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 25 H 0.10 0.72 7.65 -51.93 -0.40 0.32 16 26 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.42 3.18 8.61 -34.47 -0.30 2.89 16 28 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 30 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 31 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 34 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -35.88 323.20 -7.42 -43.30 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -3.58 Total: -2.15 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.77 Total: -19.58 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 1.37 Total: -43.63 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -2.05 Total: -35.68 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Atomic # 16 Polarization: 37.41 SS G_CDS: -0.59 Total: 36.82 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.88 -7.42 -43.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309957477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.446 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds