Wall clock time and date at job start Tue Mar 31 2020 07:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39459 * 119.73547 * 260.28042 * 3 2 1 5 5 C 1.38496 * 119.05108 * 179.75211 * 4 3 2 6 6 C 1.50697 * 120.74899 * 180.28031 * 5 4 3 7 7 N 1.46507 * 109.47283 * 270.23854 * 6 5 4 8 8 S 1.65596 * 120.00172 * 164.99752 * 7 6 5 9 9 O 1.42102 * 104.27818 * 181.07258 * 8 7 6 10 10 O 1.42093 * 104.27700 * 308.93073 * 8 7 6 11 11 C 1.81401 * 104.44706 * 65.00167 * 8 7 6 12 12 C 1.53005 * 109.46960 * 180.02562 * 11 8 7 13 13 C 1.50703 * 109.46863 * 179.97438 * 12 11 8 14 14 H 1.07996 * 120.00020 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99829 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00134 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00092 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46985 * 89.99628 * 17 15 13 19 19 H 1.48496 * 109.47183 * 209.99539 * 17 15 13 20 20 H 1.48497 * 109.46785 * 329.99901 * 17 15 13 21 21 C 1.38695 * 118.50318 * 0.51603 * 5 4 3 22 22 C 1.38471 * 119.38447 * 359.74432 * 21 5 4 23 23 N 1.31586 * 120.91270 * 359.97438 * 22 21 5 24 24 H 1.07997 * 120.47560 * 359.97438 * 4 3 2 25 25 H 1.08997 * 109.46966 * 30.23622 * 6 5 4 26 26 H 1.08996 * 109.47092 * 150.23736 * 6 5 4 27 27 H 0.97009 * 119.99475 * 345.00127 * 7 6 5 28 28 H 1.08999 * 109.46929 * 299.99901 * 11 8 7 29 29 H 1.09000 * 109.47380 * 60.00184 * 11 8 7 30 30 H 1.08999 * 109.47207 * 299.99717 * 12 11 8 31 31 H 1.09000 * 109.46935 * 59.99897 * 12 11 8 32 32 H 0.96998 * 120.00727 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.31024 * 179.77388 * 21 5 4 34 34 H 1.07995 * 119.54422 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2596 0.2054 1.1936 5 6 4.6444 0.1981 1.1782 6 6 5.4302 0.4091 2.4466 7 7 5.6846 1.8400 2.6312 8 16 6.1927 2.4078 4.1015 9 8 6.3079 3.8117 3.9143 10 8 5.2608 1.8662 5.0274 11 6 7.8291 1.6603 4.3344 12 6 8.4106 2.1135 5.6751 13 6 9.7698 1.4920 5.8689 14 1 10.1781 0.8394 5.1114 15 6 10.4924 1.7573 7.0127 16 7 11.6782 1.2146 7.1821 17 14 9.7864 2.8867 8.3226 18 1 9.0066 2.0849 9.2995 19 1 10.8940 3.5826 9.0255 20 1 8.8974 3.8902 7.6840 21 6 5.2918 -0.0029 -0.0319 22 6 4.5419 -0.1943 -1.1801 23 7 3.2267 -0.1884 -1.1373 24 1 2.7230 0.3638 2.1173 25 1 4.8603 0.0290 3.2945 26 1 6.3791 -0.1229 2.3789 27 1 5.5554 2.4549 1.8921 28 1 7.7367 0.5742 4.3274 29 1 8.4902 1.9739 3.5266 30 1 8.5029 3.1995 5.6826 31 1 7.7494 1.7995 6.4827 32 1 12.1865 1.4010 7.9869 33 1 6.3708 -0.0105 -0.0781 34 1 5.0433 -0.3515 -2.1236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309957477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:48 Heat of formation + Delta-G solvation = -37.022046 kcal Electronic energy + Delta-G solvation = -20133.626042 eV Core-core repulsion = 16771.788066 eV Total energy + Delta-G solvation = -3361.837975 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45988 -38.16089 -37.82672 -37.02839 -36.76967 -35.83198 -33.41159 -33.19515 -32.64199 -27.82201 -27.47252 -25.59270 -23.69951 -23.13421 -20.36346 -20.01930 -19.33115 -18.35901 -17.85166 -17.49967 -16.94163 -16.91575 -16.34424 -16.08416 -15.76146 -15.50721 -15.14046 -14.78643 -14.64406 -14.34262 -14.10888 -13.98758 -13.77010 -13.73854 -13.18344 -13.08060 -13.02149 -12.93889 -12.88113 -12.76986 -12.18034 -11.90615 -11.66348 -11.26547 -10.87762 -10.80230 -10.73238 -10.37995 -10.19200 -8.32457 -6.37212 -0.71178 -0.45510 0.10587 1.34884 1.37293 1.37908 1.46552 1.67799 1.95486 2.32910 2.41747 2.81791 2.86020 3.02389 3.28281 3.45967 3.68316 3.87706 3.95998 4.01093 4.18116 4.19137 4.44429 4.60978 4.65739 4.71322 4.84215 4.85503 5.15180 5.20928 5.23232 5.52938 5.54188 6.10970 6.19749 6.21444 6.69998 6.72789 7.27411 8.82779 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.003126 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.995627 B = 8954.744018 C = 9422.596005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.285 3.715 3 C 0.166 3.834 4 C -0.099 4.099 5 C -0.053 4.053 6 C 0.141 3.859 7 N -1.106 6.106 8 S 2.622 3.378 9 O -0.996 6.996 10 O -0.991 6.991 11 C -0.586 4.586 12 C -0.021 4.021 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.013 3.987 16 N -0.941 5.941 17 Si 0.921 3.079 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.249 1.249 21 C -0.106 4.106 22 C 0.109 3.891 23 N -0.473 5.473 24 H 0.155 0.845 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.427 0.573 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.268 0.732 33 H 0.184 0.816 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 -3.421 -16.194 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.031 4.031 3 C 0.030 3.970 4 C -0.122 4.122 5 C -0.063 4.063 6 C 0.016 3.984 7 N -0.868 5.868 8 S 2.718 3.282 9 O -0.986 6.986 10 O -0.981 6.981 11 C -0.718 4.718 12 C -0.060 4.060 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.186 4.186 16 N -0.581 5.581 17 Si 0.745 3.255 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.172 1.172 21 C -0.127 4.127 22 C -0.051 4.051 23 N -0.184 5.184 24 H 0.172 0.828 25 H 0.115 0.885 26 H 0.135 0.865 27 H 0.263 0.737 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.202 0.798 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -14.193 -3.096 -16.121 21.701 hybrid contribution 1.266 0.370 1.003 1.657 sum -12.927 -2.726 -15.118 20.077 Atomic orbital electron populations 1.81265 1.12862 1.09033 1.08102 1.25363 0.92145 0.93003 0.92631 1.16243 0.85191 1.04411 0.91161 1.22149 0.95058 0.96624 0.98362 1.20193 0.92578 0.97398 0.96106 1.20583 1.01613 0.80560 0.95605 1.55331 1.84528 1.15823 1.31069 1.04425 0.77044 0.73477 0.73213 1.93532 1.88108 1.31700 1.85263 1.93525 1.60362 1.80701 1.63470 1.30272 1.20222 1.14482 1.06794 1.19396 0.96836 0.97328 0.92479 1.21209 1.00973 1.29036 1.04912 0.92722 1.25844 0.95024 0.97192 1.00508 1.69998 1.13392 1.45873 1.28830 0.86076 0.79069 0.80390 0.79992 1.18697 1.20416 1.17242 1.22851 1.04215 0.94364 0.91257 1.23414 0.87042 0.93990 1.00627 1.67511 1.12470 1.11134 1.27315 0.82768 0.88517 0.86453 0.73688 0.83296 0.83570 0.95209 0.95059 0.92275 0.79832 0.78127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.87 18.54 19.00 0.35 -10.52 16 2 C 0.29 5.82 15.53 88.33 1.37 7.19 16 3 C 0.17 2.60 6.58 40.54 0.27 2.87 16 4 C -0.10 -1.20 9.50 22.63 0.21 -0.99 16 5 C -0.05 -0.48 5.31 -19.69 -0.10 -0.59 16 6 C 0.14 1.48 6.30 85.63 0.54 2.02 16 7 N -1.11 -16.73 5.88 -190.79 -1.12 -17.85 16 8 S 2.62 69.43 5.46 -56.49 -0.31 69.12 16 9 O -1.00 -33.41 18.08 -127.65 -2.31 -35.72 16 10 O -0.99 -32.09 17.50 -127.65 -2.23 -34.32 16 11 C -0.59 -17.01 6.01 71.98 0.43 -16.58 16 12 C -0.02 -0.91 4.05 29.85 0.12 -0.79 16 13 C -0.52 -27.53 9.66 25.60 0.25 -27.28 16 14 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 15 C 0.01 0.71 5.47 84.65 0.46 1.17 16 16 N -0.94 -55.85 13.96 21.45 0.30 -55.55 16 17 Si 0.92 42.15 27.47 68.60 1.88 44.04 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 21 C -0.11 -0.53 9.82 22.43 0.22 -0.31 16 22 C 0.11 0.78 11.18 84.79 0.95 1.73 16 23 N -0.47 -6.91 10.28 -189.21 -1.94 -8.85 16 24 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 25 H 0.10 1.12 7.65 -2.39 -0.02 1.10 16 26 H 0.12 0.60 8.10 -2.39 -0.02 0.58 16 27 H 0.43 5.02 8.61 -96.73 -0.83 4.19 16 28 H 0.15 3.56 8.14 -2.39 -0.02 3.54 16 29 H 0.15 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 31 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 32 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 34 H 0.20 0.12 8.06 -2.91 -0.02 0.09 16 Total: -1.00 -79.19 323.20 -0.40 -79.60 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 0.26 Total: 1.61 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 4.72 Total: -31.55 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -2.41 Total: -92.78 kcal Atomic # 8 Polarization: -65.50 SS G_CDS: -4.54 Total: -70.04 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.88 Total: 44.04 kcal Atomic # 16 Polarization: 69.43 SS G_CDS: -0.31 Total: 69.12 kcal Total: -79.19 -0.40 -79.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309957477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.574 kcal (2) G-P(sol) polarization free energy of solvation -79.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds