Wall clock time and date at job start Tue Mar 31 2020 07:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.77229 * 127.33985 * 2 1 4 4 C 1.72212 * 94.84602 * 179.81086 * 3 2 1 5 5 O 1.21825 * 127.05887 * 180.20109 * 4 3 2 6 6 N 1.34250 * 105.88518 * 0.31936 * 4 3 2 7 7 C 1.46495 * 121.37733 * 179.88300 * 6 4 3 8 8 C 1.50701 * 109.46876 * 269.71812 * 7 6 4 9 9 O 1.21294 * 120.00099 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00108 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00356 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99573 * 20.21445 * 11 10 8 13 13 C 1.38946 * 120.00090 * 200.21875 * 11 10 8 14 14 N 1.31413 * 120.00327 * 21.42470 * 13 11 10 15 15 Si 1.86802 * 119.99956 * 201.42561 * 13 11 10 16 16 H 1.48495 * 109.47082 * 59.99606 * 15 13 11 17 17 H 1.48498 * 109.46874 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46827 * 299.99806 * 15 13 11 19 19 C 1.46503 * 119.99773 * 0.02562 * 10 8 7 20 20 C 1.47201 * 109.47522 * 83.94880 * 19 10 8 21 21 N 6.79279 * 120.17140 * 177.31155 * 2 1 3 22 22 C 1.32570 * 127.33779 * 179.97438 * 2 1 3 23 23 C 1.50695 * 121.64820 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.46963 * 269.99672 * 1 2 3 25 25 H 1.08998 * 109.46896 * 30.00384 * 1 2 3 26 26 H 1.09007 * 109.46735 * 150.00060 * 1 2 3 27 27 H 1.09001 * 109.47128 * 149.72342 * 7 6 4 28 28 H 1.08999 * 109.47296 * 29.72032 * 7 6 4 29 29 H 0.96998 * 120.00177 * 180.02562 * 14 13 11 30 30 H 1.08999 * 109.47082 * 203.95366 * 19 10 8 31 31 H 1.09007 * 109.47077 * 323.94900 * 19 10 8 32 32 H 1.08996 * 109.47157 * 269.97944 * 23 22 2 33 33 H 1.08996 * 109.47002 * 29.98243 * 23 22 2 34 34 H 1.08999 * 109.46986 * 149.97433 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4091 0.0000 4 6 4.0345 0.4839 0.0057 5 8 5.1760 0.9095 0.0112 6 7 3.6508 -0.8026 0.0000 7 6 4.6313 -1.8910 0.0001 8 6 4.9675 -2.2642 -1.4208 9 8 4.4403 -1.6782 -2.3427 10 7 5.8541 -3.2490 -1.6671 11 6 6.1603 -3.5882 -2.9597 12 1 5.9677 -2.8904 -3.7611 13 6 6.7184 -4.8297 -3.2385 14 7 6.5742 -5.8210 -2.3880 15 14 7.6738 -5.0898 -4.8226 16 1 8.8306 -4.1595 -4.8613 17 1 8.1623 -6.4909 -4.8816 18 1 6.7872 -4.8259 -5.9843 19 6 6.4904 -3.9571 -0.5536 20 6 5.6034 -5.0349 -0.0863 21 7 4.9210 -5.8661 0.2755 22 6 2.3111 -1.0540 0.0005 23 6 1.7707 -2.4608 0.0005 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5139 27 1 4.2132 -2.7566 0.5138 28 1 5.5357 -1.5653 0.5139 29 1 6.9641 -6.6876 -2.5825 30 1 7.4361 -4.3840 -0.8875 31 1 6.6751 -3.2589 0.2629 32 1 1.6404 -2.7999 1.0282 33 1 0.8097 -2.4808 -0.5134 34 1 2.4712 -3.1191 -0.5133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318245432.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:38 Heat of formation + Delta-G solvation = 4.386086 kcal Electronic energy + Delta-G solvation = -21758.895172 eV Core-core repulsion = 18398.852787 eV Total energy + Delta-G solvation = -3360.042384 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90977 -38.67106 -37.41141 -35.93615 -34.51483 -33.36265 -32.05947 -29.94477 -29.16858 -27.59121 -25.50887 -24.47249 -23.08137 -20.04922 -19.21245 -18.12762 -18.01483 -17.14444 -16.62432 -16.24316 -15.55069 -15.06969 -14.66693 -14.20633 -14.12970 -13.83544 -13.68526 -13.42604 -13.19169 -13.02494 -12.78488 -12.49253 -12.40408 -12.06320 -11.84759 -11.68520 -11.47905 -11.20861 -11.10118 -10.79395 -10.72741 -10.51884 -10.47639 -9.84342 -9.47609 -9.38480 -8.68430 -8.18476 -7.64866 -6.63650 -4.14734 1.16031 1.57302 1.92719 2.40869 2.96891 3.02954 3.15927 3.18946 3.37039 3.60060 3.79736 4.00806 4.55041 4.67576 4.74831 4.93496 5.05215 5.12663 5.26142 5.33789 5.37878 5.41552 5.47532 5.57329 5.82221 5.87345 5.89639 5.95908 6.31282 6.36336 6.96939 7.35131 7.53758 7.73464 8.12659 8.55560 8.83617 9.02168 9.52640 10.42245 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021433 B = 0.004980 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.073356 B = 5621.104841 C = 6016.659639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.221 4.221 3 S -0.013 6.013 4 C 0.493 3.507 5 O -0.475 6.475 6 N -0.507 5.507 7 C 0.083 3.917 8 C 0.439 3.561 9 O -0.557 6.557 10 N -0.434 5.434 11 C -0.315 4.315 12 H 0.108 0.892 13 C 0.036 3.964 14 N -0.873 5.873 15 Si 0.929 3.071 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.216 3.784 20 C 0.242 3.758 21 N -0.464 5.464 22 C 0.120 3.880 23 C -0.102 4.102 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.276 0.724 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.686 6.268 7.713 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.340 4.340 3 S 0.230 5.770 4 C 0.175 3.825 5 O -0.355 6.355 6 N -0.226 5.226 7 C -0.046 4.046 8 C 0.225 3.775 9 O -0.438 6.438 10 N -0.154 5.154 11 C -0.442 4.442 12 H 0.126 0.874 13 C -0.169 4.169 14 N -0.512 5.512 15 Si 0.755 3.245 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.197 1.197 19 C 0.088 3.912 20 C -0.077 4.077 21 N -0.144 5.144 22 C 0.009 3.991 23 C -0.161 4.161 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.323 6.733 7.771 12.623 hybrid contribution 1.235 -1.584 -1.026 2.255 sum -6.088 5.149 6.746 10.444 Atomic orbital electron populations 1.20046 0.86011 1.03107 1.02359 1.23289 0.99360 0.91881 1.19497 1.84759 0.98509 1.11848 1.81871 1.21354 0.94344 0.84621 0.82218 1.90928 1.19234 1.71762 1.53552 1.45495 1.05812 1.07192 1.64105 1.21811 0.93633 0.90269 0.98921 1.20138 0.82266 0.85378 0.89683 1.90600 1.53086 1.54894 1.45260 1.43568 1.35840 1.30068 1.05971 1.19660 1.40224 1.00622 0.83713 0.87422 1.25308 0.97854 0.94064 0.99630 1.69816 1.41651 1.01851 1.37837 0.85935 0.80012 0.77283 0.81248 1.19532 1.20880 1.19708 1.18771 0.95088 0.88218 0.89092 1.29181 0.93700 0.94031 0.90766 1.80857 1.10480 1.10513 1.12586 1.19208 0.82033 0.98059 0.99778 1.20774 1.02451 0.89513 1.03371 0.91032 0.91111 0.90486 0.87500 0.86918 0.91363 0.85338 0.89691 0.89831 0.89201 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.10 36.01 0.36 -0.15 16 2 C -0.22 -2.95 6.72 -36.21 -0.24 -3.19 16 3 S -0.01 -0.19 22.97 -107.50 -2.47 -2.66 16 4 C 0.49 9.22 8.27 53.82 0.45 9.67 16 5 O -0.47 -10.07 17.55 5.08 0.09 -9.98 16 6 N -0.51 -8.87 2.09 -118.57 -0.25 -9.12 16 7 C 0.08 1.43 4.07 -5.20 -0.02 1.41 16 8 C 0.44 9.71 7.37 -10.98 -0.08 9.63 16 9 O -0.56 -14.54 16.10 5.54 0.09 -14.45 16 10 N -0.43 -9.71 2.60 -117.93 -0.31 -10.02 16 11 C -0.32 -7.88 9.27 -14.94 -0.14 -8.02 16 12 H 0.11 2.89 7.43 -52.49 -0.39 2.50 16 13 C 0.04 0.86 4.84 -17.47 -0.08 0.77 16 14 N -0.87 -21.08 9.58 55.50 0.53 -20.55 16 15 Si 0.93 19.17 29.60 -169.99 -5.03 14.14 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 C 0.22 3.99 4.91 -6.83 -0.03 3.96 16 20 C 0.24 4.87 12.82 -20.80 -0.27 4.61 16 21 N -0.46 -10.04 18.53 42.10 0.78 -9.26 16 22 C 0.12 1.80 6.59 -82.51 -0.54 1.26 16 23 C -0.10 -1.30 9.07 36.00 0.33 -0.97 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.63 6.77 -51.92 -0.35 0.28 16 27 H 0.11 1.62 6.18 -51.93 -0.32 1.30 16 28 H 0.11 1.75 7.07 -51.93 -0.37 1.38 16 29 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 30 H 0.13 2.44 6.63 -51.93 -0.34 2.09 16 31 H 0.09 1.18 6.70 -51.92 -0.35 0.83 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.96 6.69 -51.93 -0.35 0.61 16 34 H 0.08 1.24 6.70 -51.93 -0.35 0.89 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -31.97 311.26 -5.37 -37.34 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -3.22 Total: 0.92 kcal Atomic # 6 Polarization: 19.24 SS G_CDS: -0.28 Total: 18.96 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.76 Total: -48.95 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.18 Total: -24.44 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -2.47 Total: -2.66 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.97 -5.37 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318245432.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.722 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds