Wall clock time and date at job start Tue Mar 31 2020 07:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.77229 * 127.33985 * 2 1 4 4 C 1.72212 * 94.84602 * 179.81086 * 3 2 1 5 5 O 1.21825 * 127.05887 * 180.20109 * 4 3 2 6 6 N 1.34250 * 105.88518 * 0.31936 * 4 3 2 7 7 C 1.46495 * 121.37733 * 179.88300 * 6 4 3 8 8 C 1.50701 * 109.46876 * 269.71812 * 7 6 4 9 9 O 1.21294 * 120.00099 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00108 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00356 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99573 * 20.21445 * 11 10 8 13 13 C 1.38946 * 120.00090 * 200.21875 * 11 10 8 14 14 N 1.31413 * 120.00327 * 21.42470 * 13 11 10 15 15 Si 1.86802 * 119.99956 * 201.42561 * 13 11 10 16 16 H 1.48495 * 109.47082 * 59.99606 * 15 13 11 17 17 H 1.48498 * 109.46874 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46827 * 299.99806 * 15 13 11 19 19 C 1.46503 * 119.99773 * 0.02562 * 10 8 7 20 20 C 1.47201 * 109.47522 * 83.94880 * 19 10 8 21 21 N 6.79279 * 120.17140 * 177.31155 * 2 1 3 22 22 C 1.32570 * 127.33779 * 179.97438 * 2 1 3 23 23 C 1.50695 * 121.64820 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.46963 * 269.99672 * 1 2 3 25 25 H 1.08998 * 109.46896 * 30.00384 * 1 2 3 26 26 H 1.09007 * 109.46735 * 150.00060 * 1 2 3 27 27 H 1.09001 * 109.47128 * 149.72342 * 7 6 4 28 28 H 1.08999 * 109.47296 * 29.72032 * 7 6 4 29 29 H 0.96998 * 120.00177 * 180.02562 * 14 13 11 30 30 H 1.08999 * 109.47082 * 203.95366 * 19 10 8 31 31 H 1.09007 * 109.47077 * 323.94900 * 19 10 8 32 32 H 1.08996 * 109.47157 * 269.97944 * 23 22 2 33 33 H 1.08996 * 109.47002 * 29.98243 * 23 22 2 34 34 H 1.08999 * 109.46986 * 149.97433 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4091 0.0000 4 6 4.0345 0.4839 0.0057 5 8 5.1760 0.9095 0.0112 6 7 3.6508 -0.8026 0.0000 7 6 4.6313 -1.8910 0.0001 8 6 4.9675 -2.2642 -1.4208 9 8 4.4403 -1.6782 -2.3427 10 7 5.8541 -3.2490 -1.6671 11 6 6.1603 -3.5882 -2.9597 12 1 5.9677 -2.8904 -3.7611 13 6 6.7184 -4.8297 -3.2385 14 7 6.5742 -5.8210 -2.3880 15 14 7.6738 -5.0898 -4.8226 16 1 8.8306 -4.1595 -4.8613 17 1 8.1623 -6.4909 -4.8816 18 1 6.7872 -4.8259 -5.9843 19 6 6.4904 -3.9571 -0.5536 20 6 5.6034 -5.0349 -0.0863 21 7 4.9210 -5.8661 0.2755 22 6 2.3111 -1.0540 0.0005 23 6 1.7707 -2.4608 0.0005 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5139 27 1 4.2132 -2.7566 0.5138 28 1 5.5357 -1.5653 0.5139 29 1 6.9641 -6.6876 -2.5825 30 1 7.4361 -4.3840 -0.8875 31 1 6.6751 -3.2589 0.2629 32 1 1.6404 -2.7999 1.0282 33 1 0.8097 -2.4808 -0.5134 34 1 2.4712 -3.1191 -0.5133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318245432.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:37 Heat of formation + Delta-G solvation = -15.906041 kcal Electronic energy + Delta-G solvation = -21759.775104 eV Core-core repulsion = 18398.852787 eV Total energy + Delta-G solvation = -3360.922317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.24589 -40.33568 -38.74948 -37.64893 -36.24263 -34.56562 -33.84560 -31.21990 -30.23690 -29.20534 -27.02293 -25.78089 -24.47451 -21.48828 -20.63996 -19.84496 -19.24430 -18.70587 -18.19638 -17.68866 -17.10192 -16.44665 -16.32441 -15.76431 -15.70368 -14.91461 -14.86610 -14.82552 -14.61092 -14.42007 -13.98466 -13.70577 -13.55059 -13.44876 -13.36770 -13.17826 -12.95371 -12.85490 -12.42175 -12.35010 -12.22186 -12.14410 -11.86476 -11.23902 -11.17783 -10.88383 -10.24482 -10.00642 -8.85612 -8.47876 -6.05612 -0.12433 0.37996 0.75637 1.09559 1.34542 1.46154 1.53881 1.68348 1.74416 1.97895 2.19554 2.31305 2.91358 2.97677 3.45451 3.52117 3.73570 3.84634 4.01029 4.09824 4.25894 4.49432 4.52335 4.58843 4.74941 4.79252 4.89509 5.03004 5.06528 5.39308 5.41760 5.73438 5.90780 6.21283 6.31203 6.94628 7.01496 7.21320 7.75731 8.55249 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021433 B = 0.004980 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.073356 B = 5621.104841 C = 6016.659639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.200 4.200 3 S 0.011 5.989 4 C 0.466 3.534 5 O -0.519 6.519 6 N -0.512 5.512 7 C 0.092 3.908 8 C 0.434 3.566 9 O -0.606 6.606 10 N -0.443 5.443 11 C -0.344 4.344 12 H 0.077 0.923 13 C 0.015 3.985 14 N -0.883 5.883 15 Si 0.984 3.016 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.283 1.283 19 C 0.215 3.785 20 C 0.253 3.747 21 N -0.490 5.490 22 C 0.086 3.914 23 C -0.095 4.095 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.278 0.722 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.857 6.073 8.807 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.319 4.319 3 S 0.255 5.745 4 C 0.150 3.850 5 O -0.403 6.403 6 N -0.231 5.231 7 C -0.037 4.037 8 C 0.222 3.778 9 O -0.491 6.491 10 N -0.163 5.163 11 C -0.471 4.471 12 H 0.095 0.905 13 C -0.189 4.189 14 N -0.521 5.521 15 Si 0.809 3.191 16 H -0.188 1.188 17 H -0.200 1.200 18 H -0.209 1.209 19 C 0.088 3.912 20 C -0.065 4.065 21 N -0.171 5.171 22 C -0.023 4.023 23 C -0.154 4.154 24 H 0.116 0.884 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.154 0.846 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.520 6.510 8.899 13.934 hybrid contribution 1.473 -1.487 -1.382 2.508 sum -7.047 5.023 7.516 11.462 Atomic orbital electron populations 1.20306 0.82631 1.04380 1.04440 1.24009 1.01052 0.90246 1.16614 1.84641 0.97039 1.11909 1.80896 1.21893 0.95003 0.85495 0.82614 1.90885 1.20914 1.72869 1.55605 1.45605 1.06841 1.06782 1.63832 1.21749 0.94948 0.91372 0.95625 1.20923 0.81202 0.84379 0.91258 1.90555 1.54766 1.56411 1.47370 1.43706 1.36137 1.30309 1.06150 1.19489 1.42166 1.00809 0.84634 0.90465 1.25845 0.97679 0.93351 1.02028 1.69881 1.41515 1.01891 1.38807 0.85120 0.78739 0.77518 0.77763 1.18813 1.19963 1.20879 1.19089 0.94001 0.88665 0.89419 1.29425 0.93258 0.93748 0.90020 1.80858 1.11247 1.11323 1.13622 1.19684 0.81219 0.99677 1.01743 1.20822 1.02276 0.87397 1.04891 0.88401 0.90057 0.88875 0.85172 0.85094 0.91227 0.85625 0.84598 0.87177 0.87048 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.10 71.24 0.72 -0.13 16 2 C -0.20 -4.85 6.72 24.53 0.16 -4.69 16 3 S 0.01 0.34 22.97 -56.49 -1.30 -0.96 16 4 C 0.47 17.50 8.27 129.87 1.07 18.58 16 5 O -0.52 -22.53 17.55 -4.75 -0.08 -22.61 16 6 N -0.51 -17.61 2.09 -647.50 -1.35 -18.97 16 7 C 0.09 3.12 4.07 85.63 0.35 3.47 16 8 C 0.43 19.48 7.37 87.66 0.65 20.12 16 9 O -0.61 -32.74 16.10 -3.07 -0.05 -32.78 16 10 N -0.44 -19.98 2.60 -645.40 -1.68 -21.66 16 11 C -0.34 -17.58 9.27 84.04 0.78 -16.80 16 12 H 0.08 4.36 7.43 -2.91 -0.02 4.33 16 13 C 0.01 0.70 4.84 84.93 0.41 1.11 16 14 N -0.88 -42.16 9.58 21.66 0.21 -41.95 16 15 Si 0.98 39.29 29.60 68.60 2.03 41.32 16 16 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 19 C 0.21 7.70 4.91 84.57 0.42 8.12 16 20 C 0.25 9.94 12.82 89.46 1.15 11.08 16 21 N -0.49 -20.71 18.53 19.99 0.37 -20.34 16 22 C 0.09 2.43 6.59 40.71 0.27 2.70 16 23 C -0.10 -2.23 9.07 71.23 0.65 -1.58 16 24 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.12 6.77 -2.38 -0.02 1.11 16 27 H 0.13 3.77 6.18 -2.39 -0.01 3.75 16 28 H 0.13 3.92 7.07 -2.39 -0.02 3.90 16 29 H 0.28 12.81 8.31 -92.71 -0.77 12.04 16 30 H 0.13 4.64 6.63 -2.39 -0.02 4.62 16 31 H 0.14 3.45 6.70 -2.38 -0.02 3.43 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 2.06 6.69 -2.39 -0.02 2.04 16 34 H 0.04 1.39 6.70 -2.39 -0.02 1.37 16 Total: -1.00 -71.73 311.26 5.93 -65.80 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.16 Total: 10.17 kcal Atomic # 6 Polarization: 35.36 SS G_CDS: 6.62 Total: 41.98 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -2.45 Total: -102.92 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -0.13 Total: -55.40 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.30 Total: -0.96 kcal Total: -71.73 5.93 -65.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318245432.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.893 kcal (2) G-P(sol) polarization free energy of solvation -71.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds