Wall clock time and date at job start Tue Mar 31 2020 07:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47248 * 299.99832 * 3 2 1 6 6 H 1.48507 * 109.47278 * 59.99596 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.80994 * 99.99971 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46976 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00251 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.40103 * 119.99524 * 180.02562 * 13 11 10 15 15 C 1.34780 * 119.99524 * 180.02562 * 14 13 11 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 14 19 19 C 1.38650 * 120.78792 * 269.71450 * 18 17 15 20 20 C 1.38207 * 119.16129 * 179.79528 * 19 18 17 21 21 N 1.31868 * 120.76474 * 0.49389 * 20 19 18 22 22 C 1.31874 * 121.72157 * 359.73831 * 21 20 19 23 23 C 1.38199 * 120.77057 * 0.02562 * 22 21 20 24 24 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47472 * 60.00351 * 10 9 7 26 26 H 1.09002 * 109.47205 * 300.00123 * 10 9 7 27 27 H 0.96995 * 120.00011 * 359.97438 * 13 11 10 28 28 H 0.96995 * 120.00466 * 359.97438 * 14 13 11 29 29 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 30 30 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 31 31 H 1.07998 * 120.42060 * 0.02562 * 19 18 17 32 32 H 1.07997 * 119.61581 * 180.20726 * 20 19 18 33 33 H 1.07998 * 119.61429 * 180.02562 * 22 21 20 34 34 H 1.07991 * 120.42226 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 7 2.3529 -7.6551 0.0023 15 6 3.2097 -8.6955 0.0044 16 8 4.4060 -8.4960 0.0066 17 6 2.6812 -10.1068 0.0040 18 6 3.8357 -11.0755 0.0059 19 6 4.3773 -11.5365 -1.1842 20 6 5.4384 -12.4211 -1.1432 21 7 5.9287 -12.8334 0.0094 22 6 5.4356 -12.4197 1.1604 23 6 4.3776 -11.5314 1.1980 24 1 -0.4850 0.8400 -0.0004 25 1 3.1238 -3.7310 0.8925 26 1 3.1252 -3.7317 -0.8874 27 1 3.8009 -6.1834 0.0043 28 1 1.3961 -7.8147 0.0010 29 1 2.0709 -10.2665 0.8929 30 1 2.0743 -10.2673 -0.8871 31 1 3.9775 -11.2057 -2.1314 32 1 5.8681 -12.7822 -2.0658 33 1 5.8637 -12.7792 2.0845 34 1 3.9780 -11.1966 2.1437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318891108.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:14 Heat of formation + Delta-G solvation = -5.627780 kcal Electronic energy + Delta-G solvation = -19522.327926 eV Core-core repulsion = 16161.851308 eV Total energy + Delta-G solvation = -3360.476618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84096 -40.03558 -38.78411 -35.36953 -34.26829 -32.50385 -31.97086 -31.52078 -29.48964 -27.92927 -25.55463 -23.80034 -23.07308 -21.56135 -20.85876 -18.19268 -17.98634 -17.30923 -16.86133 -16.85322 -15.95083 -15.88355 -15.69849 -14.88022 -14.86729 -14.60438 -14.25975 -13.99071 -13.86750 -13.47061 -13.13428 -12.90590 -12.69358 -12.36495 -11.83363 -11.25785 -11.11413 -11.10405 -10.84696 -10.57482 -10.01790 -9.90805 -9.82562 -9.73387 -9.45291 -9.14400 -8.42907 -8.36339 -6.60560 -6.29460 -4.01320 0.82352 0.83740 1.75235 2.12972 2.83814 3.12035 3.17856 3.26154 3.35245 3.48726 3.99020 4.00818 4.12460 4.17032 4.31665 4.50850 4.70378 4.78169 4.92714 4.94789 4.99202 5.06481 5.30041 5.44779 5.49145 5.60988 5.71340 5.92012 5.99390 6.36481 6.57680 6.59824 7.44437 7.53614 7.66257 7.76012 8.28302 8.38874 9.16487 10.77991 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.046853 B = 0.002272 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.471444 B =12319.191380 C =12617.984000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.075 0.925 9 S -0.052 6.052 10 C -0.146 4.146 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.532 5.532 14 N -0.519 5.519 15 C 0.513 3.487 16 O -0.535 6.535 17 C -0.095 4.095 18 C -0.023 4.023 19 C -0.157 4.157 20 C 0.099 3.901 21 N -0.487 5.487 22 C 0.099 3.901 23 C -0.157 4.157 24 H 0.269 0.731 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.430 0.570 28 H 0.432 0.568 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.135 0.865 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 -23.241 0.006 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.094 0.906 9 S 0.174 5.826 10 C -0.298 4.298 11 C 0.322 3.678 12 O -0.389 6.389 13 N -0.284 5.284 14 N -0.266 5.266 15 C 0.299 3.701 16 O -0.410 6.410 17 C -0.136 4.136 18 C -0.031 4.031 19 C -0.177 4.177 20 C -0.058 4.058 21 N -0.196 5.196 22 C -0.058 4.058 23 C -0.177 4.177 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.272 0.728 28 H 0.274 0.726 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.231 -23.903 0.008 24.702 hybrid contribution 1.176 1.968 -0.001 2.293 sum 7.407 -21.935 0.007 23.152 Atomic orbital electron populations 1.70016 1.05971 1.27515 1.46742 1.25002 0.95060 0.99122 0.94383 0.86084 0.79605 0.81677 0.77947 1.19545 1.20516 1.20519 1.22906 0.95050 0.91384 1.59171 0.90645 1.85422 1.04105 0.96257 1.96788 1.23488 1.07250 0.93222 1.05792 1.20704 0.86415 0.85353 0.75339 1.90724 1.14989 1.84994 1.48177 1.45215 1.10524 0.94200 1.78462 1.44831 1.10444 0.95846 1.75485 1.20596 0.86679 0.85624 0.77225 1.90773 1.15064 1.85448 1.49754 1.20592 0.97301 0.89018 1.06701 1.19597 0.95272 0.94577 0.93680 1.22026 0.98158 0.98923 0.98586 1.22738 0.92910 0.93815 0.96309 1.67666 1.28901 1.24385 0.98630 1.22738 0.92912 0.93790 0.96340 1.22022 0.98173 0.98907 0.98570 0.92132 0.88452 0.88460 0.72793 0.72598 0.86716 0.86722 0.84749 0.82670 0.82672 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.80 9.50 30.94 0.29 -14.50 16 8 H 0.08 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.05 -1.34 20.57 -107.50 -2.21 -3.55 16 10 C -0.15 -2.75 6.16 36.01 0.22 -2.53 16 11 C 0.54 9.26 7.96 -10.98 -0.09 9.17 16 12 O -0.52 -10.52 15.70 5.56 0.09 -10.43 16 13 N -0.53 -7.24 6.26 31.22 0.20 -7.05 16 14 N -0.52 -5.80 6.26 31.22 0.20 -5.60 16 15 C 0.51 5.31 7.94 -10.98 -0.09 5.23 16 16 O -0.54 -7.54 15.87 5.56 0.09 -7.45 16 17 C -0.10 -0.59 5.88 -29.03 -0.17 -0.76 16 18 C -0.02 -0.18 4.41 -104.32 -0.46 -0.64 16 19 C -0.16 -1.26 9.82 -39.44 -0.39 -1.65 16 20 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 21 N -0.49 -5.00 10.36 -13.25 -0.14 -5.14 16 22 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 23 C -0.16 -1.26 9.82 -39.44 -0.39 -1.65 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 26 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 27 H 0.43 5.35 8.00 -182.60 -1.46 3.89 16 28 H 0.43 4.24 8.00 -182.60 -1.46 2.77 16 29 H 0.11 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.11 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -36.35 325.30 -8.57 -44.91 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.84 Total: 2.28 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.55 Total: -4.06 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.99 Total: -42.53 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.18 Total: -17.88 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.21 Total: -3.55 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.35 -8.57 -44.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318891108.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.285 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds