Wall clock time and date at job start Tue Mar 31 2020 07:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47248 * 299.99832 * 3 2 1 6 6 H 1.48507 * 109.47278 * 59.99596 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.80994 * 99.99971 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46976 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00251 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.40103 * 119.99524 * 180.02562 * 13 11 10 15 15 C 1.34780 * 119.99524 * 180.02562 * 14 13 11 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 14 19 19 C 1.38650 * 120.78792 * 269.71450 * 18 17 15 20 20 C 1.38207 * 119.16129 * 179.79528 * 19 18 17 21 21 N 1.31868 * 120.76474 * 0.49389 * 20 19 18 22 22 C 1.31874 * 121.72157 * 359.73831 * 21 20 19 23 23 C 1.38199 * 120.77057 * 0.02562 * 22 21 20 24 24 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47472 * 60.00351 * 10 9 7 26 26 H 1.09002 * 109.47205 * 300.00123 * 10 9 7 27 27 H 0.96995 * 120.00011 * 359.97438 * 13 11 10 28 28 H 0.96995 * 120.00466 * 359.97438 * 14 13 11 29 29 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 30 30 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 31 31 H 1.07998 * 120.42060 * 0.02562 * 19 18 17 32 32 H 1.07997 * 119.61581 * 180.20726 * 20 19 18 33 33 H 1.07998 * 119.61429 * 180.02562 * 22 21 20 34 34 H 1.07991 * 120.42226 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 7 2.3529 -7.6551 0.0023 15 6 3.2097 -8.6955 0.0044 16 8 4.4060 -8.4960 0.0066 17 6 2.6812 -10.1068 0.0040 18 6 3.8357 -11.0755 0.0059 19 6 4.3773 -11.5365 -1.1842 20 6 5.4384 -12.4211 -1.1432 21 7 5.9287 -12.8334 0.0094 22 6 5.4356 -12.4197 1.1604 23 6 4.3776 -11.5314 1.1980 24 1 -0.4850 0.8400 -0.0004 25 1 3.1238 -3.7310 0.8925 26 1 3.1252 -3.7317 -0.8874 27 1 3.8009 -6.1834 0.0043 28 1 1.3961 -7.8147 0.0010 29 1 2.0709 -10.2665 0.8929 30 1 2.0743 -10.2673 -0.8871 31 1 3.9775 -11.2057 -2.1314 32 1 5.8681 -12.7822 -2.0658 33 1 5.8637 -12.7792 2.0845 34 1 3.9780 -11.1966 2.1437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318891108.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:13 Heat of formation + Delta-G solvation = -32.751375 kcal Electronic energy + Delta-G solvation = -19523.504093 eV Core-core repulsion = 16161.851308 eV Total energy + Delta-G solvation = -3361.652785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.65971 -40.93871 -39.91556 -36.49135 -34.92260 -34.58990 -33.13096 -32.09756 -30.61665 -28.86350 -27.64277 -24.38885 -23.79544 -22.68664 -21.82070 -19.88462 -19.09166 -18.56735 -17.49944 -17.49875 -17.07879 -16.88006 -16.81578 -16.48621 -16.14702 -15.96417 -15.38650 -14.92295 -14.59893 -14.54592 -14.51221 -13.90384 -13.69430 -13.32529 -13.16958 -12.92315 -12.63785 -12.47024 -12.32267 -11.76587 -11.51631 -11.24704 -11.16190 -10.55104 -10.44204 -10.31109 -10.04383 -9.52542 -8.67023 -8.35950 -6.13318 0.16499 0.24778 0.70211 1.17233 1.35265 1.41733 1.52267 1.61283 1.65598 2.25502 2.77947 2.99000 3.00782 3.28708 3.43709 3.62375 3.67634 3.83567 3.99683 4.18623 4.23809 4.26083 4.45141 4.47940 4.53941 4.76690 4.91599 5.02564 5.34722 5.43064 5.48393 5.62596 5.81130 6.19917 6.38748 6.76888 7.05505 7.06518 7.23553 8.73231 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.046853 B = 0.002272 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.471444 B =12319.191380 C =12617.984000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.133 6.133 10 C -0.125 4.125 11 C 0.542 3.458 12 O -0.551 6.551 13 N -0.520 5.520 14 N -0.516 5.516 15 C 0.519 3.481 16 O -0.572 6.572 17 C -0.085 4.085 18 C -0.035 4.035 19 C -0.163 4.163 20 C 0.083 3.917 21 N -0.517 5.517 22 C 0.083 3.917 23 C -0.163 4.163 24 H 0.272 0.728 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.438 0.562 28 H 0.440 0.560 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.816 -23.771 0.003 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.093 5.907 10 C -0.278 4.278 11 C 0.328 3.672 12 O -0.427 6.427 13 N -0.269 5.269 14 N -0.265 5.265 15 C 0.307 3.693 16 O -0.450 6.450 17 C -0.126 4.126 18 C -0.044 4.044 19 C -0.183 4.183 20 C -0.074 4.074 21 N -0.227 5.227 22 C -0.074 4.074 23 C -0.183 4.183 24 H 0.081 0.919 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.281 0.719 28 H 0.283 0.717 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.190 0.810 33 H 0.190 0.810 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.232 -24.471 0.005 25.517 hybrid contribution 0.950 1.958 0.000 2.177 sum 8.182 -22.513 0.005 23.954 Atomic orbital electron populations 1.70165 1.07848 1.28601 1.47998 1.26080 0.95962 1.03204 0.93771 0.84927 0.78612 0.76515 0.78045 1.18172 1.19989 1.19999 1.23250 0.95477 0.91981 1.58799 0.89799 1.85513 1.09349 0.98723 1.97077 1.23285 1.04291 0.92569 1.07629 1.20210 0.86011 0.85517 0.75452 1.90716 1.16389 1.85376 1.50249 1.44817 1.10348 0.95155 1.76582 1.45069 1.11168 0.94453 1.75771 1.21377 0.85989 0.86536 0.75420 1.90768 1.16810 1.86052 1.51355 1.20701 0.97009 0.85179 1.09695 1.19893 0.95873 0.94915 0.93736 1.22310 0.97851 0.98544 0.99579 1.23123 0.93411 0.94186 0.96643 1.67665 1.29977 1.25478 0.99536 1.23121 0.93407 0.94160 0.96677 1.22305 0.97873 0.98538 0.99560 0.91943 0.86552 0.86558 0.71899 0.71683 0.83688 0.83692 0.82884 0.81013 0.81019 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.26 13.22 21.65 0.29 -53.97 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 1.00 42.63 29.55 68.60 2.03 44.66 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.55 -30.13 9.50 67.95 0.65 -29.49 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 9 S -0.13 -7.00 20.57 -56.49 -1.16 -8.16 16 10 C -0.13 -4.61 6.16 71.24 0.44 -4.17 16 11 C 0.54 18.14 7.96 87.66 0.70 18.84 16 12 O -0.55 -22.29 15.70 -3.03 -0.05 -22.34 16 13 N -0.52 -13.15 6.26 -173.53 -1.09 -14.23 16 14 N -0.52 -10.32 6.26 -173.53 -1.09 -11.41 16 15 C 0.52 9.39 7.94 87.66 0.70 10.09 16 16 O -0.57 -15.04 15.87 -3.03 -0.05 -15.09 16 17 C -0.09 -0.78 5.88 29.10 0.17 -0.60 16 18 C -0.04 -0.50 4.41 -19.67 -0.09 -0.58 16 19 C -0.16 -2.33 9.82 22.36 0.22 -2.11 16 20 C 0.08 1.36 11.18 84.68 0.95 2.31 16 21 N -0.52 -10.36 10.36 -195.85 -2.03 -12.39 16 22 C 0.08 1.36 11.18 84.68 0.95 2.31 16 23 C -0.16 -2.34 9.82 22.36 0.22 -2.12 16 24 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 25 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 26 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 27 H 0.44 9.99 8.00 -213.32 -1.71 8.29 16 28 H 0.44 7.58 8.00 -213.32 -1.71 5.88 16 29 H 0.15 0.51 8.10 -2.39 -0.02 0.49 16 30 H 0.15 0.50 8.10 -2.39 -0.02 0.49 16 31 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -80.16 325.30 -0.04 -80.20 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -2.26 Total: 16.97 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 5.36 Total: -4.24 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -3.92 Total: -92.01 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.10 Total: -37.42 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -1.16 Total: -8.16 kcal Total: -80.16 -0.04 -80.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318891108.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.449 kcal (2) G-P(sol) polarization free energy of solvation -80.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds