Wall clock time and date at job start Tue Mar 31 2020 07:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86802 * 120.00118 * 2 1 4 4 H 1.48495 * 109.47404 * 239.99841 * 3 2 1 5 5 H 1.48499 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46866 * 119.99919 * 3 2 1 7 7 C 1.40034 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00521 * 192.77120 * 7 2 1 9 9 C 1.41546 * 119.99582 * 12.76685 * 7 2 1 10 10 C 1.41170 * 120.99581 * 201.16859 * 9 7 2 11 11 C 1.37590 * 119.01698 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.10763 * 359.72173 * 11 10 9 13 13 C 1.32477 * 122.23040 * 0.57267 * 12 11 10 14 14 N 1.39466 * 119.57788 * 179.70965 * 13 12 11 15 15 C 1.34778 * 120.00186 * 6.10723 * 14 13 12 16 16 O 1.21273 * 119.99893 * 355.30803 * 15 14 13 17 17 C 1.50705 * 119.99646 * 175.03202 * 15 14 13 18 18 S 1.81400 * 109.46800 * 180.27674 * 17 15 14 19 19 C 1.81395 * 102.99979 * 180.02562 * 18 17 15 20 20 C 1.50700 * 109.47177 * 179.97438 * 19 18 17 21 21 N 1.34773 * 119.99933 * 179.97438 * 20 19 18 22 22 O 1.21274 * 120.00069 * 359.97438 * 20 19 18 23 23 C 1.38599 * 120.83737 * 359.42802 * 13 12 11 24 24 H 0.97003 * 119.99845 * 0.02562 * 1 2 3 25 25 H 1.08007 * 120.49424 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.44612 * 179.97438 * 11 10 9 27 27 H 0.97005 * 119.99908 * 186.11131 * 14 13 12 28 28 H 1.08992 * 109.47064 * 300.27589 * 17 15 14 29 29 H 1.08996 * 109.47030 * 60.28150 * 17 15 14 30 30 H 1.09004 * 109.47278 * 299.99882 * 19 18 17 31 31 H 1.08997 * 109.47177 * 59.99679 * 19 18 17 32 32 H 0.97003 * 120.00690 * 0.02562 * 21 20 19 33 33 H 0.97006 * 120.00221 * 179.97438 * 21 20 19 34 34 H 1.08000 * 120.59487 * 180.29897 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0675 -1.2244 0.2062 9 6 1.3261 -2.4232 -0.2720 10 6 1.8577 -3.6647 0.1392 11 6 1.1613 -4.8164 -0.1466 12 7 0.0088 -4.7750 -0.7905 13 6 -0.5299 -3.6370 -1.2025 14 7 -1.7470 -3.6581 -1.8831 15 6 -2.4279 -4.8142 -2.0106 16 8 -1.9434 -5.8508 -1.6086 17 6 -3.7940 -4.8178 -2.6469 18 16 -4.4483 -6.5096 -2.6646 19 6 -6.0691 -6.3121 -3.4547 20 6 -6.7505 -7.6532 -3.5454 21 7 -7.9750 -7.7507 -4.0999 22 8 -6.1970 -8.6446 -3.1195 23 6 0.0980 -2.4252 -0.9606 24 1 -0.4850 0.8401 -0.0004 25 1 2.7975 -3.7099 0.6695 26 1 1.5618 -5.7700 0.1644 27 1 -2.1034 -2.8407 -2.2649 28 1 -4.4631 -4.1755 -2.0744 29 1 -3.7198 -4.4463 -3.6689 30 1 -6.6816 -5.6323 -2.8624 31 1 -5.9376 -5.9033 -4.4564 32 1 -8.4177 -6.9578 -4.4409 33 1 -8.4135 -8.6140 -4.1586 34 1 -0.3471 -1.4994 -1.2941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319233539.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:18 Heat of formation + Delta-G solvation = -30.141560 kcal Electronic energy + Delta-G solvation = -19903.262036 eV Core-core repulsion = 16541.722421 eV Total energy + Delta-G solvation = -3361.539615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65481 -39.50567 -37.75216 -34.38044 -34.06136 -33.77967 -30.75288 -30.36628 -29.81572 -27.96725 -26.03529 -22.12129 -21.83167 -21.25639 -19.79002 -18.05129 -17.72251 -17.15884 -16.87451 -16.08917 -15.85364 -15.60871 -15.20926 -15.15645 -14.20035 -14.11306 -14.03368 -13.49494 -13.29863 -13.07253 -12.82289 -12.61133 -12.49554 -11.99083 -11.44997 -11.20806 -10.92367 -10.39796 -10.33345 -10.16028 -10.08188 -9.94047 -9.80142 -9.49637 -9.40868 -8.02987 -7.76279 -7.62952 -7.04570 -6.79546 -4.65961 1.22611 2.27922 2.40013 2.51129 2.77923 2.97675 3.00875 3.17240 3.17698 3.39447 3.59634 3.81209 4.50692 4.64576 4.66655 4.87210 4.91580 5.01150 5.20091 5.68084 5.98168 6.37476 6.55604 6.62295 6.79321 6.87251 6.91395 7.12175 7.37209 7.44294 7.72913 7.88069 7.91164 8.16956 8.39511 8.66286 8.72529 8.82591 9.68063 10.02852 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.033084 B = 0.002823 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.120924 B = 9916.399930 C =10690.345631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.138 3.862 10 C -0.284 4.284 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.335 3.665 14 N -0.654 5.654 15 C 0.514 3.486 16 O -0.458 6.458 17 C -0.147 4.147 18 S -0.096 6.096 19 C -0.158 4.158 20 C 0.536 3.464 21 N -0.854 5.854 22 O -0.516 6.516 23 C -0.245 4.245 24 H 0.282 0.718 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.408 0.592 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.402 0.598 33 H 0.405 0.595 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.069 -1.566 -9.114 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.130 3.870 10 C -0.308 4.308 11 C -0.035 4.035 12 N -0.274 5.274 13 C 0.110 3.890 14 N -0.300 5.300 15 C 0.296 3.704 16 O -0.327 6.327 17 C -0.299 4.299 18 S 0.128 5.872 19 C -0.309 4.309 20 C 0.318 3.682 21 N -0.419 5.419 22 O -0.390 6.390 23 C -0.270 4.270 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.142 0.858 27 H 0.243 0.757 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.230 0.770 33 H 0.236 0.764 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.446 -4.460 -8.280 17.238 hybrid contribution -0.555 3.475 -0.692 3.586 sum -15.001 -0.985 -8.972 17.508 Atomic orbital electron populations 1.69728 1.07647 1.29271 1.35053 1.25985 0.94859 1.01583 0.91921 0.86246 0.80025 0.79656 0.80119 1.18733 1.20244 1.18846 1.19585 0.96590 0.90256 1.41611 0.90031 1.17589 0.90475 0.92293 0.86654 1.21894 1.03693 0.93906 1.11265 1.21760 0.90227 0.96758 0.94754 1.67202 1.13703 1.27223 1.19259 1.18189 0.85829 0.90923 0.94040 1.43282 1.20565 1.10787 1.55410 1.19575 0.85354 0.84695 0.80770 1.90845 1.67390 1.30346 1.44090 1.23704 0.99610 1.01122 1.05482 1.88413 1.13284 1.06858 1.78647 1.23609 1.01486 0.99542 1.06246 1.19668 0.81443 0.89854 0.77203 1.43743 1.19319 1.14139 1.64734 1.90835 1.64042 1.38082 1.46077 1.21787 1.00761 0.95670 1.08824 0.90726 0.87964 0.85816 0.75708 0.87343 0.87471 0.87132 0.87164 0.77022 0.76383 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.00 10.53 55.55 0.59 -18.42 16 2 C 0.07 1.77 5.30 -17.34 -0.09 1.68 16 3 Si 0.92 17.60 29.58 -169.99 -5.03 12.57 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.42 9.15 -37.65 -0.34 -11.76 16 8 H 0.08 1.98 7.88 -52.49 -0.41 1.56 16 9 C 0.14 3.62 5.65 -106.55 -0.60 3.02 16 10 C -0.28 -6.99 9.90 -38.71 -0.38 -7.38 16 11 C 0.12 2.91 11.15 -17.68 -0.20 2.71 16 12 N -0.55 -14.38 7.86 -12.52 -0.10 -14.48 16 13 C 0.33 8.11 7.41 -154.70 -1.15 6.96 16 14 N -0.65 -12.53 5.39 -11.49 -0.06 -12.60 16 15 C 0.51 9.66 7.81 -10.98 -0.09 9.58 16 16 O -0.46 -10.86 14.12 5.56 0.08 -10.78 16 17 C -0.15 -1.85 6.43 36.01 0.23 -1.62 16 18 S -0.10 -1.40 20.01 -107.50 -2.15 -3.55 16 19 C -0.16 -1.33 6.42 36.01 0.23 -1.10 16 20 C 0.54 5.40 8.12 -10.99 -0.09 5.31 16 21 N -0.85 -4.41 8.87 31.22 0.28 -4.13 16 22 O -0.52 -8.02 16.70 5.56 0.09 -7.93 16 23 C -0.24 -6.15 8.66 -38.48 -0.33 -6.48 16 24 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 25 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 26 H 0.12 2.66 8.06 -52.49 -0.42 2.23 16 27 H 0.41 6.16 8.70 -40.82 -0.36 5.80 16 28 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 0.68 8.83 -40.82 -0.36 0.32 16 33 H 0.40 1.80 8.93 -40.82 -0.36 1.43 16 34 H 0.14 3.41 5.83 -52.49 -0.31 3.11 16 LS Contribution 317.53 15.07 4.79 4.79 Total: -1.00 -36.06 317.53 -7.80 -43.86 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -3.47 Total: 9.74 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.81 Total: 0.92 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.70 Total: -49.62 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.17 Total: -18.71 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.15 Total: -3.55 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.06 -7.80 -43.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319233539.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.723 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds