Wall clock time and date at job start Tue Mar 31 2020 07:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86802 * 120.00118 * 2 1 4 4 H 1.48495 * 109.47404 * 239.99841 * 3 2 1 5 5 H 1.48499 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46866 * 119.99919 * 3 2 1 7 7 C 1.40034 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00521 * 192.77120 * 7 2 1 9 9 C 1.41546 * 119.99582 * 12.76685 * 7 2 1 10 10 C 1.41170 * 120.99581 * 201.16859 * 9 7 2 11 11 C 1.37590 * 119.01698 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.10763 * 359.72173 * 11 10 9 13 13 C 1.32477 * 122.23040 * 0.57267 * 12 11 10 14 14 N 1.39466 * 119.57788 * 179.70965 * 13 12 11 15 15 C 1.34778 * 120.00186 * 6.10723 * 14 13 12 16 16 O 1.21273 * 119.99893 * 355.30803 * 15 14 13 17 17 C 1.50705 * 119.99646 * 175.03202 * 15 14 13 18 18 S 1.81400 * 109.46800 * 180.27674 * 17 15 14 19 19 C 1.81395 * 102.99979 * 180.02562 * 18 17 15 20 20 C 1.50700 * 109.47177 * 179.97438 * 19 18 17 21 21 N 1.34773 * 119.99933 * 179.97438 * 20 19 18 22 22 O 1.21274 * 120.00069 * 359.97438 * 20 19 18 23 23 C 1.38599 * 120.83737 * 359.42802 * 13 12 11 24 24 H 0.97003 * 119.99845 * 0.02562 * 1 2 3 25 25 H 1.08007 * 120.49424 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.44612 * 179.97438 * 11 10 9 27 27 H 0.97005 * 119.99908 * 186.11131 * 14 13 12 28 28 H 1.08992 * 109.47064 * 300.27589 * 17 15 14 29 29 H 1.08996 * 109.47030 * 60.28150 * 17 15 14 30 30 H 1.09004 * 109.47278 * 299.99882 * 19 18 17 31 31 H 1.08997 * 109.47177 * 59.99679 * 19 18 17 32 32 H 0.97003 * 120.00690 * 0.02562 * 21 20 19 33 33 H 0.97006 * 120.00221 * 179.97438 * 21 20 19 34 34 H 1.08000 * 120.59487 * 180.29897 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0675 -1.2244 0.2062 9 6 1.3261 -2.4232 -0.2720 10 6 1.8577 -3.6647 0.1392 11 6 1.1613 -4.8164 -0.1466 12 7 0.0088 -4.7750 -0.7905 13 6 -0.5299 -3.6370 -1.2025 14 7 -1.7470 -3.6581 -1.8831 15 6 -2.4279 -4.8142 -2.0106 16 8 -1.9434 -5.8508 -1.6086 17 6 -3.7940 -4.8178 -2.6469 18 16 -4.4483 -6.5096 -2.6646 19 6 -6.0691 -6.3121 -3.4547 20 6 -6.7505 -7.6532 -3.5454 21 7 -7.9750 -7.7507 -4.0999 22 8 -6.1970 -8.6446 -3.1195 23 6 0.0980 -2.4252 -0.9606 24 1 -0.4850 0.8401 -0.0004 25 1 2.7975 -3.7099 0.6695 26 1 1.5618 -5.7700 0.1644 27 1 -2.1034 -2.8407 -2.2649 28 1 -4.4631 -4.1755 -2.0744 29 1 -3.7198 -4.4463 -3.6689 30 1 -6.6816 -5.6323 -2.8624 31 1 -5.9376 -5.9033 -4.4564 32 1 -8.4177 -6.9578 -4.4409 33 1 -8.4135 -8.6140 -4.1586 34 1 -0.3471 -1.4994 -1.2941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319233539.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:18 Heat of formation + Delta-G solvation = -58.464774 kcal Electronic energy + Delta-G solvation = -19904.490223 eV Core-core repulsion = 16541.722421 eV Total energy + Delta-G solvation = -3362.767802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21258 -40.38049 -39.50399 -36.15720 -35.51079 -34.75051 -32.50507 -31.72825 -30.65622 -29.53380 -27.92537 -23.88587 -23.54709 -22.09816 -21.38269 -19.50474 -18.93760 -18.21213 -17.81877 -17.59147 -17.05934 -16.79049 -16.65491 -16.30674 -16.03658 -15.77732 -15.12078 -14.80791 -14.66197 -14.59793 -14.31825 -13.86702 -13.62262 -13.32918 -13.11727 -12.86547 -12.67995 -12.05233 -11.92178 -11.52350 -11.25437 -11.18376 -11.08875 -10.84062 -10.70644 -9.95173 -9.62272 -8.88056 -8.67577 -8.59285 -6.57925 0.30049 0.73597 1.01088 1.42464 1.52250 1.53210 1.55812 1.57385 1.83440 2.16816 2.21011 2.56725 2.81702 3.57841 3.75726 4.00478 4.12770 4.15506 4.21259 4.30542 4.34120 4.74279 4.86140 4.92892 5.10167 5.26160 5.48933 5.63267 5.86163 5.92685 6.14157 6.40028 6.45847 6.59376 6.79505 6.83547 7.27143 7.30964 7.84820 8.26417 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.033084 B = 0.002823 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.120924 B = 9916.399930 C =10690.345631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.037 3.963 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.478 4.478 8 H 0.083 0.917 9 C 0.107 3.893 10 C -0.299 4.299 11 C 0.111 3.889 12 N -0.584 5.584 13 C 0.331 3.669 14 N -0.645 5.645 15 C 0.506 3.494 16 O -0.513 6.513 17 C -0.115 4.115 18 S -0.205 6.205 19 C -0.129 4.129 20 C 0.528 3.472 21 N -0.827 5.827 22 O -0.583 6.583 23 C -0.262 4.262 24 H 0.293 0.707 25 H 0.115 0.885 26 H 0.146 0.854 27 H 0.427 0.573 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.422 0.578 33 H 0.411 0.589 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.040 0.938 -10.448 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.180 4.180 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.509 4.509 8 H 0.101 0.899 9 C 0.099 3.901 10 C -0.322 4.322 11 C -0.043 4.043 12 N -0.304 5.304 13 C 0.106 3.894 14 N -0.293 5.293 15 C 0.292 3.708 16 O -0.385 6.385 17 C -0.266 4.266 18 S 0.019 5.981 19 C -0.279 4.279 20 C 0.312 3.688 21 N -0.393 5.393 22 O -0.463 6.463 23 C -0.287 4.287 24 H 0.105 0.895 25 H 0.133 0.867 26 H 0.163 0.837 27 H 0.265 0.735 28 H 0.162 0.838 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.254 0.746 33 H 0.243 0.757 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.507 -1.913 -9.663 19.223 hybrid contribution -0.075 2.684 -0.310 2.703 sum -16.582 0.771 -9.972 19.365 Atomic orbital electron populations 1.69747 1.08890 1.30966 1.33940 1.26845 0.95718 1.04587 0.90824 0.85118 0.78701 0.75080 0.80022 1.18410 1.18745 1.18658 1.19879 0.96956 0.91196 1.42841 0.89888 1.18047 0.91444 0.93261 0.87331 1.22063 1.04430 0.93790 1.11959 1.22162 0.90076 0.97720 0.94319 1.67331 1.14481 1.28162 1.20412 1.18464 0.87171 0.90253 0.93552 1.43285 1.19088 1.12245 1.54722 1.20639 0.87162 0.83376 0.79656 1.90824 1.69177 1.32204 1.46307 1.23487 0.95536 0.99961 1.07603 1.88886 1.18900 1.09876 1.80439 1.23571 0.97143 0.99237 1.07993 1.20049 0.82319 0.89712 0.76704 1.43535 1.17621 1.15512 1.62585 1.90822 1.65935 1.40211 1.49284 1.21801 1.01094 0.96014 1.09799 0.89544 0.86715 0.83715 0.73493 0.83790 0.83369 0.83610 0.83453 0.74560 0.75732 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.34 10.53 21.84 0.23 -38.11 16 2 C 0.04 1.74 5.30 85.29 0.45 2.19 16 3 Si 0.99 34.98 29.58 68.60 2.03 37.01 16 4 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 5 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.48 -24.55 9.15 23.52 0.22 -24.34 16 8 H 0.08 4.08 7.88 -2.91 -0.02 4.05 16 9 C 0.11 5.76 5.65 -21.12 -0.12 5.64 16 10 C -0.30 -15.13 9.90 22.84 0.23 -14.90 16 11 C 0.11 5.56 11.15 84.50 0.94 6.50 16 12 N -0.58 -31.07 7.86 -193.53 -1.52 -32.59 16 13 C 0.33 16.30 7.41 132.75 0.98 17.29 16 14 N -0.64 -24.35 5.39 -308.65 -1.66 -26.01 16 15 C 0.51 18.74 7.81 87.66 0.68 19.42 16 16 O -0.51 -24.96 14.12 -3.01 -0.04 -25.00 16 17 C -0.12 -2.57 6.43 71.24 0.46 -2.11 16 18 S -0.21 -5.78 20.01 -56.49 -1.13 -6.91 16 19 C -0.13 -1.73 6.42 71.24 0.46 -1.27 16 20 C 0.53 9.68 8.12 87.66 0.71 10.39 16 21 N -0.83 -6.16 8.87 -173.54 -1.54 -7.70 16 22 O -0.58 -18.37 16.70 -3.01 -0.05 -18.42 16 23 C -0.26 -13.37 8.66 22.98 0.20 -13.17 16 24 H 0.29 12.30 8.29 -92.71 -0.77 11.53 16 25 H 0.11 5.31 8.06 -2.91 -0.02 5.29 16 26 H 0.15 6.37 8.06 -2.91 -0.02 6.34 16 27 H 0.43 12.20 8.70 -92.70 -0.81 11.39 16 28 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.42 -0.31 8.83 -92.71 -0.82 -1.13 16 33 H 0.41 2.75 8.93 -92.70 -0.83 1.92 16 34 H 0.14 6.93 5.83 -2.91 -0.02 6.92 16 Total: -1.00 -84.53 317.53 0.26 -84.27 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: -1.27 Total: 27.82 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.21 Total: 5.63 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -4.49 Total: -104.41 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -0.09 Total: -43.42 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.13 Total: -6.91 kcal Total: -84.53 0.26 -84.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319233539.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.808 kcal (2) G-P(sol) polarization free energy of solvation -84.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds