Wall clock time and date at job start Tue Mar 31 2020 07:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31799 * 119.04251 * 2 1 4 4 C 1.32567 * 120.85009 * 180.02562 * 3 2 1 5 5 C 1.38092 * 119.09152 * 359.94928 * 4 3 2 6 6 C 1.39137 * 118.61512 * 0.07484 * 5 4 3 7 7 O 1.35516 * 120.54650 * 179.97438 * 6 5 4 8 8 N 1.31767 * 119.04559 * 179.97438 * 2 1 3 9 9 C 1.50467 * 108.94257 * 179.97438 * 5 4 3 10 10 N 1.46737 * 107.69680 * 0.07040 * 9 5 4 11 11 C 1.34779 * 126.58956 * 179.97438 * 10 9 5 12 12 O 1.21280 * 119.99977 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99893 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47129 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00008 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00102 * 0.02562 * 15 14 13 17 17 C 1.38802 * 120.00204 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00176 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99896 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47045 * 89.99996 * 19 17 15 21 21 H 1.48500 * 109.47602 * 210.00006 * 19 17 15 22 22 H 1.48500 * 109.47084 * 330.00454 * 19 17 15 23 23 C 1.46713 * 106.81535 * 359.95996 * 10 9 5 24 24 H 1.09000 * 109.47332 * 90.00335 * 1 2 3 25 25 H 1.09009 * 109.46795 * 209.99680 * 1 2 3 26 26 H 1.08997 * 109.47594 * 329.99771 * 1 2 3 27 27 H 0.96704 * 113.99329 * 269.95216 * 7 6 5 28 28 H 1.09002 * 109.82403 * 240.50385 * 9 5 4 29 29 H 1.09002 * 109.82342 * 119.63631 * 9 5 4 30 30 H 1.08995 * 109.47201 * 300.00620 * 13 11 10 31 31 H 1.09005 * 109.46878 * 60.00311 * 13 11 10 32 32 H 0.96997 * 119.99865 * 179.97438 * 18 17 15 33 33 H 1.09005 * 109.81319 * 119.54217 * 23 10 9 34 34 H 1.09003 * 109.81305 * 240.45349 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1523 0.0000 4 6 3.4719 1.1941 -0.0005 5 6 4.1810 0.0092 0.0000 6 6 3.4751 -1.1899 -0.0005 7 8 4.1315 -2.3755 -0.0005 8 7 2.1468 -1.1520 0.0005 9 6 5.6530 0.3209 -0.0014 10 7 5.7998 1.7809 -0.0011 11 6 6.9569 2.4720 -0.0015 12 8 8.0161 1.8812 -0.0027 13 6 6.9345 3.9788 -0.0017 14 16 8.6319 4.6074 -0.0031 15 6 8.3162 6.3409 -0.0023 16 1 7.2992 6.7046 -0.0008 17 6 9.3744 7.2391 -0.0036 18 7 9.1385 8.5341 -0.0035 19 14 11.1333 6.6101 -0.0054 20 1 11.5978 6.4432 -1.4060 21 1 12.0085 7.5851 0.6936 22 1 11.1918 5.3017 0.6947 23 6 4.4449 2.3436 -0.0005 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 4.3216 -2.7197 -0.8840 28 1 6.1186 -0.0973 -0.8938 29 1 6.1204 -0.0978 0.8900 30 1 6.4150 4.3344 -0.8915 31 1 6.4157 4.3346 0.8885 32 1 9.8781 9.1617 -0.0040 33 1 4.2979 2.9521 0.8919 34 1 4.2974 2.9526 -0.8925 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332372632.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:48 Heat of formation + Delta-G solvation = -7.799588 kcal Electronic energy + Delta-G solvation = -20343.866870 eV Core-core repulsion = 16983.296075 eV Total energy + Delta-G solvation = -3360.570795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.11852 -39.69988 -38.17686 -37.19346 -33.48858 -32.76253 -32.48197 -30.67943 -28.90472 -28.54701 -25.72982 -25.27557 -23.02136 -22.50620 -20.06465 -19.09934 -18.48213 -17.67095 -16.95102 -16.38256 -16.22830 -15.92980 -15.16093 -15.02089 -14.48966 -14.16846 -14.15014 -13.90637 -13.61460 -13.39481 -12.88861 -12.84088 -12.74404 -12.65559 -12.43338 -12.16383 -11.31980 -11.15667 -11.04655 -10.88453 -10.69773 -9.95857 -9.84825 -9.79641 -9.71676 -9.04705 -8.74918 -8.57894 -6.99168 -6.33079 -4.06194 0.29765 0.42918 2.30201 2.70994 2.79918 2.88991 3.08190 3.22749 3.30002 3.46801 3.52278 3.71773 3.98583 4.25858 4.28600 4.46805 4.68859 4.87108 5.01224 5.02435 5.06065 5.12226 5.15281 5.19668 5.28565 5.39219 5.45997 5.65413 5.79999 5.88063 5.93668 6.40263 6.87095 7.23165 7.57055 7.89815 8.16095 8.37550 9.12683 10.76054 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.033875 B = 0.003146 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.374079 B = 8899.243142 C = 9691.965194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.348 3.652 3 N -0.506 5.506 4 C 0.186 3.814 5 C -0.236 4.236 6 C 0.391 3.609 7 O -0.471 6.471 8 N -0.533 5.533 9 C 0.168 3.832 10 N -0.623 5.623 11 C 0.560 3.440 12 O -0.504 6.504 13 C -0.120 4.120 14 S -0.139 6.139 15 C -0.522 4.522 16 H 0.090 0.910 17 C 0.096 3.904 18 N -0.879 5.879 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.153 3.847 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.410 0.590 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.271 0.729 33 H 0.106 0.894 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.124 -18.403 -1.652 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 N -0.223 5.223 4 C 0.039 3.961 5 C -0.243 4.243 6 C 0.203 3.797 7 O -0.279 6.279 8 N -0.258 5.258 9 C 0.044 3.956 10 N -0.362 5.362 11 C 0.349 3.651 12 O -0.376 6.376 13 C -0.270 4.270 14 S 0.088 5.912 15 C -0.670 4.670 16 H 0.108 0.892 17 C -0.112 4.112 18 N -0.515 5.515 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C 0.029 3.971 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.270 0.730 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.302 -19.031 -1.055 24.443 hybrid contribution 0.391 0.475 -0.485 0.784 sum -14.911 -18.556 -1.541 23.854 Atomic orbital electron populations 1.20631 0.84591 1.04696 1.04366 1.23116 0.98024 0.81380 0.89392 1.67509 1.08122 1.30601 1.16019 1.21717 0.89865 0.94867 0.89611 1.22034 0.99116 0.95233 1.07870 1.18666 0.86329 0.84406 0.90298 1.84727 1.74421 1.34362 1.34413 1.67961 1.08702 1.31616 1.17534 1.19851 0.89706 0.82227 1.03853 1.48033 1.05245 1.06111 1.76811 1.19953 0.80945 0.89214 0.75002 1.90745 1.28508 1.70669 1.47723 1.23291 1.05682 0.91864 1.06190 1.84825 1.02590 1.06377 1.97455 1.22287 0.97712 0.87918 1.59067 0.89236 1.24706 0.99332 0.94088 0.93123 1.69933 1.32835 1.00920 1.47821 0.86747 0.84179 0.81026 0.79969 1.19166 1.19878 1.15901 1.20151 0.79340 0.92355 1.05261 0.89105 0.89232 0.88978 0.72977 0.89425 0.89128 0.88082 0.88036 0.91864 0.87578 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.32 36.01 0.37 -0.14 16 2 C 0.35 3.48 7.64 -157.21 -1.20 2.28 16 3 N -0.51 -5.60 10.34 -7.09 -0.07 -5.67 16 4 C 0.19 2.05 7.45 -82.37 -0.61 1.44 16 5 C -0.24 -2.53 6.24 -104.45 -0.65 -3.18 16 6 C 0.39 4.04 7.83 -16.76 -0.13 3.91 16 7 O -0.47 -3.91 13.58 -18.24 -0.25 -4.16 16 8 N -0.53 -5.76 10.36 -10.83 -0.11 -5.88 16 9 C 0.17 1.91 6.90 -5.18 -0.04 1.87 16 10 N -0.62 -8.20 3.34 -176.25 -0.59 -8.79 16 11 C 0.56 9.61 7.89 -10.98 -0.09 9.52 16 12 O -0.50 -10.44 16.24 5.56 0.09 -10.35 16 13 C -0.12 -2.21 5.41 36.01 0.19 -2.01 16 14 S -0.14 -3.40 18.55 -107.50 -1.99 -5.40 16 15 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 16 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 17 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 18 N -0.88 -26.09 13.97 55.49 0.78 -25.32 16 19 Si 0.86 21.34 27.74 -169.99 -4.71 16.63 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 23 C 0.15 1.62 6.54 -5.12 -0.03 1.59 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.47 8.14 -51.92 -0.42 0.04 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.41 1.27 9.06 45.56 0.41 1.68 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -35.32 315.51 -7.05 -42.37 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -2.97 Total: -1.79 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.97 Total: 3.61 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.00 Total: -45.65 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.16 Total: -14.51 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.63 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.32 -7.05 -42.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332372632.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.569 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds