Wall clock time and date at job start Tue Mar 31 2020 07:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31799 * 119.04251 * 2 1 4 4 C 1.32567 * 120.85009 * 180.02562 * 3 2 1 5 5 C 1.38092 * 119.09152 * 359.94928 * 4 3 2 6 6 C 1.39137 * 118.61512 * 0.07484 * 5 4 3 7 7 O 1.35516 * 120.54650 * 179.97438 * 6 5 4 8 8 N 1.31767 * 119.04559 * 179.97438 * 2 1 3 9 9 C 1.50467 * 108.94257 * 179.97438 * 5 4 3 10 10 N 1.46737 * 107.69680 * 0.07040 * 9 5 4 11 11 C 1.34779 * 126.58956 * 179.97438 * 10 9 5 12 12 O 1.21280 * 119.99977 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99893 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47129 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00008 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00102 * 0.02562 * 15 14 13 17 17 C 1.38802 * 120.00204 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00176 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99896 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47045 * 89.99996 * 19 17 15 21 21 H 1.48500 * 109.47602 * 210.00006 * 19 17 15 22 22 H 1.48500 * 109.47084 * 330.00454 * 19 17 15 23 23 C 1.46713 * 106.81535 * 359.95996 * 10 9 5 24 24 H 1.09000 * 109.47332 * 90.00335 * 1 2 3 25 25 H 1.09009 * 109.46795 * 209.99680 * 1 2 3 26 26 H 1.08997 * 109.47594 * 329.99771 * 1 2 3 27 27 H 0.96704 * 113.99329 * 269.95216 * 7 6 5 28 28 H 1.09002 * 109.82403 * 240.50385 * 9 5 4 29 29 H 1.09002 * 109.82342 * 119.63631 * 9 5 4 30 30 H 1.08995 * 109.47201 * 300.00620 * 13 11 10 31 31 H 1.09005 * 109.46878 * 60.00311 * 13 11 10 32 32 H 0.96997 * 119.99865 * 179.97438 * 18 17 15 33 33 H 1.09005 * 109.81319 * 119.54217 * 23 10 9 34 34 H 1.09003 * 109.81305 * 240.45349 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1523 0.0000 4 6 3.4719 1.1941 -0.0005 5 6 4.1810 0.0092 0.0000 6 6 3.4751 -1.1899 -0.0005 7 8 4.1315 -2.3755 -0.0005 8 7 2.1468 -1.1520 0.0005 9 6 5.6530 0.3209 -0.0014 10 7 5.7998 1.7809 -0.0011 11 6 6.9569 2.4720 -0.0015 12 8 8.0161 1.8812 -0.0027 13 6 6.9345 3.9788 -0.0017 14 16 8.6319 4.6074 -0.0031 15 6 8.3162 6.3409 -0.0023 16 1 7.2992 6.7046 -0.0008 17 6 9.3744 7.2391 -0.0036 18 7 9.1385 8.5341 -0.0035 19 14 11.1333 6.6101 -0.0054 20 1 11.5978 6.4432 -1.4060 21 1 12.0085 7.5851 0.6936 22 1 11.1918 5.3017 0.6947 23 6 4.4449 2.3436 -0.0005 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 4.3216 -2.7197 -0.8840 28 1 6.1186 -0.0973 -0.8938 29 1 6.1204 -0.0978 0.8900 30 1 6.4150 4.3344 -0.8915 31 1 6.4157 4.3346 0.8885 32 1 9.8781 9.1617 -0.0040 33 1 4.2979 2.9521 0.8919 34 1 4.2974 2.9526 -0.8925 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332372632.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:47 Heat of formation + Delta-G solvation = -36.276975 kcal Electronic energy + Delta-G solvation = -20345.101742 eV Core-core repulsion = 16983.296075 eV Total energy + Delta-G solvation = -3361.805667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.92992 -40.88100 -38.88042 -38.28870 -34.66322 -34.34465 -33.62365 -31.70341 -30.01788 -29.39462 -27.85775 -26.22043 -23.88223 -23.27956 -21.23023 -19.99980 -19.67626 -19.19390 -17.87200 -17.63109 -17.37314 -17.05487 -16.87814 -15.98244 -15.77656 -15.38131 -15.24824 -15.09569 -14.87799 -14.41917 -14.24421 -13.72590 -13.69028 -13.36741 -13.32931 -13.22689 -13.07491 -13.00792 -12.69150 -11.92104 -11.86020 -11.69136 -11.27498 -11.15994 -10.69077 -10.56638 -10.52168 -9.75577 -9.00276 -8.50412 -6.21739 -0.46822 -0.34833 0.88275 1.32685 1.34461 1.36371 1.50640 1.74518 2.13217 2.25255 2.29154 2.39579 2.66571 2.88140 2.91652 3.21579 3.46940 3.51955 4.01424 4.10992 4.14917 4.22955 4.33199 4.37674 4.46491 4.49649 4.71943 4.77890 4.83938 4.88815 5.25800 5.63113 5.72099 6.04144 6.13707 6.39455 6.79860 6.85786 6.94872 8.61840 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.033875 B = 0.003146 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.374079 B = 8899.243142 C = 9691.965194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.343 3.657 3 N -0.519 5.519 4 C 0.181 3.819 5 C -0.244 4.244 6 C 0.396 3.604 7 O -0.477 6.477 8 N -0.547 5.547 9 C 0.170 3.830 10 N -0.614 5.614 11 C 0.567 3.433 12 O -0.546 6.546 13 C -0.106 4.106 14 S -0.171 6.171 15 C -0.527 4.527 16 H 0.066 0.934 17 C 0.046 3.954 18 N -0.917 5.917 19 Si 0.912 3.088 20 H -0.262 1.262 21 H -0.261 1.261 22 H -0.235 1.235 23 C 0.149 3.851 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.432 0.568 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.277 0.723 33 H 0.120 0.880 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.196 -19.821 -1.848 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 N -0.236 5.236 4 C 0.035 3.965 5 C -0.251 4.251 6 C 0.208 3.792 7 O -0.288 6.288 8 N -0.273 5.273 9 C 0.047 3.953 10 N -0.350 5.350 11 C 0.356 3.644 12 O -0.422 6.422 13 C -0.257 4.257 14 S 0.055 5.945 15 C -0.675 4.675 16 H 0.084 0.916 17 C -0.159 4.159 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.187 1.187 21 H -0.185 1.185 22 H -0.159 1.159 23 C 0.026 3.974 24 H 0.125 0.875 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.296 0.704 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.423 -20.472 -1.266 26.276 hybrid contribution 0.506 0.797 -0.435 1.040 sum -15.917 -19.675 -1.702 25.365 Atomic orbital electron populations 1.20792 0.82091 1.05581 1.05640 1.23861 0.99502 0.80934 0.88030 1.67585 1.07992 1.31148 1.16911 1.21753 0.90159 0.94944 0.89627 1.21913 0.98401 0.95536 1.09237 1.18771 0.86392 0.84826 0.89247 1.84681 1.74138 1.33584 1.36412 1.68086 1.08818 1.31978 1.18385 1.19875 0.90446 0.80818 1.04170 1.47773 1.05301 1.07145 1.74812 1.19496 0.81375 0.88523 0.75030 1.90732 1.30209 1.71125 1.50154 1.23247 1.01432 0.92956 1.08017 1.84742 1.08182 1.03947 1.97608 1.22440 0.96714 0.90111 1.58195 0.91620 1.25543 1.03165 0.94298 0.92941 1.70013 1.34259 1.02072 1.49141 0.85896 0.79815 0.80635 0.80222 1.18679 1.18550 1.15904 1.20344 0.77766 0.92520 1.06762 0.87464 0.88268 0.88112 0.70404 0.88549 0.89531 0.86173 0.86309 0.91380 0.86240 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.32 71.24 0.73 -0.08 16 2 C 0.34 6.20 7.64 138.76 1.06 7.26 16 3 N -0.52 -10.50 10.34 -176.36 -1.82 -12.33 16 4 C 0.18 3.66 7.45 42.38 0.32 3.97 16 5 C -0.24 -4.83 6.24 -19.76 -0.12 -4.95 16 6 C 0.40 7.50 7.83 84.75 0.66 8.16 16 7 O -0.48 -7.03 13.58 -88.18 -1.20 -8.23 16 8 N -0.55 -10.82 10.36 -300.79 -3.12 -13.94 16 9 C 0.17 3.62 6.90 85.51 0.59 4.21 16 10 N -0.61 -15.07 3.34 -829.92 -2.77 -17.84 16 11 C 0.57 18.71 7.89 87.66 0.69 19.40 16 12 O -0.55 -22.27 16.24 -3.03 -0.05 -22.32 16 13 C -0.11 -3.75 5.41 71.24 0.39 -3.36 16 14 S -0.17 -8.32 18.55 -56.49 -1.05 -9.37 16 15 C -0.53 -29.73 10.04 67.95 0.68 -29.05 16 16 H 0.07 3.89 8.03 -2.91 -0.02 3.87 16 17 C 0.05 2.64 5.50 84.86 0.47 3.11 16 18 N -0.92 -54.95 13.97 21.65 0.30 -54.65 16 19 Si 0.91 44.01 27.74 68.60 1.90 45.92 16 20 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.24 -11.27 6.74 99.48 0.67 -10.60 16 23 C 0.15 2.82 6.54 85.56 0.56 3.38 16 24 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.43 1.78 9.06 -74.05 -0.67 1.11 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.12 3.81 8.14 -2.40 -0.02 3.80 16 31 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 32 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -75.63 315.51 -1.33 -76.97 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 0.44 Total: 3.75 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.03 Total: 12.05 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -7.41 Total: -98.76 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.25 Total: -30.55 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.92 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.05 Total: -9.37 kcal Total: -75.63 -1.33 -76.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332372632.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.689 kcal (2) G-P(sol) polarization free energy of solvation -75.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds