Wall clock time and date at job start Tue Mar 31 2020 07:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38135 * 120.48323 * 2 1 4 4 N 1.31827 * 120.91768 * 180.02562 * 3 2 1 5 5 C 1.31904 * 122.04039 * 359.97273 * 4 3 2 6 6 Cl 1.73606 * 119.56534 * 180.02562 * 5 4 3 7 7 C 1.38311 * 120.87117 * 0.02562 * 5 4 3 8 8 C 1.39822 * 118.98270 * 0.23344 * 7 5 4 9 9 C 1.48044 * 120.92170 * 179.74909 * 8 7 5 10 10 O 1.21426 * 120.00046 * 186.71744 * 9 8 7 11 11 O 1.34668 * 119.99865 * 6.71769 * 9 8 7 12 12 C 1.45202 * 116.99904 * 184.97398 * 11 9 8 13 13 C 1.53008 * 109.47093 * 175.12952 * 12 11 9 14 14 C 1.50693 * 115.54771 * 185.44022 * 13 12 11 15 15 H 1.08005 * 120.00376 * 144.57571 * 14 13 12 16 16 C 1.37880 * 120.00380 * 324.56590 * 14 13 12 17 17 N 1.31513 * 120.00272 * 167.70362 * 16 14 13 18 18 Si 1.86802 * 119.99650 * 347.71064 * 16 14 13 19 19 H 1.48506 * 109.47234 * 95.51612 * 18 16 14 20 20 H 1.48499 * 109.47157 * 215.50970 * 18 16 14 21 21 H 1.48494 * 109.47475 * 335.51346 * 18 16 14 22 22 C 1.52994 * 117.49814 * 39.76880 * 13 12 11 23 23 C 1.52998 * 117.49723 * 331.10786 * 13 12 11 24 24 H 1.09000 * 109.47105 * 96.58328 * 1 2 3 25 25 H 1.09003 * 109.46916 * 216.58243 * 1 2 3 26 26 H 1.09002 * 109.47447 * 336.58539 * 1 2 3 27 27 H 1.08003 * 119.54661 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.50993 * 179.97438 * 7 5 4 29 29 H 1.09003 * 109.47278 * 295.12836 * 12 11 9 30 30 H 1.08997 * 109.47271 * 55.13308 * 12 11 9 31 31 H 0.97002 * 120.00145 * 179.97438 * 17 16 14 32 32 H 1.08999 * 117.49996 * 359.97438 * 22 13 12 33 33 H 1.08994 * 117.49977 * 145.02425 * 22 13 12 34 34 H 1.08995 * 117.49773 * 214.98090 * 23 13 12 35 35 H 1.09000 * 117.50126 * 359.97219 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1904 0.0000 4 7 3.5259 1.2004 -0.0005 5 6 4.2342 0.0876 -0.0005 6 17 5.9680 0.1757 -0.0005 7 6 3.6137 -1.1485 -0.0005 8 6 2.2166 -1.2053 -0.0055 9 6 1.5082 -2.5052 -0.0112 10 8 0.3010 -2.5382 -0.1385 11 8 2.2025 -3.6511 0.1247 12 6 1.4583 -4.8916 -0.0010 13 6 2.4260 -6.0752 0.0606 14 6 1.8125 -7.4296 -0.1849 15 1 2.3726 -8.1890 -0.7103 16 6 0.5362 -7.6995 0.2613 17 7 -0.0913 -8.7782 -0.1538 18 14 -0.3019 -6.5328 1.4555 19 1 -1.1597 -5.5840 0.7010 20 1 -1.1397 -7.3115 2.4026 21 1 0.7271 -5.7755 2.2122 22 6 3.5796 -5.9932 1.0622 23 6 3.8547 -5.8462 -0.4365 24 1 -0.3633 -0.1178 -1.0209 25 1 -0.3633 -0.8252 0.6125 26 1 -0.3634 0.9430 0.4084 27 1 1.6682 2.1260 -0.0004 28 1 4.1993 -2.0559 -0.0009 29 1 0.7387 -4.9678 0.8141 30 1 0.9301 -4.9034 -0.9544 31 1 -0.9891 -8.9682 0.1605 32 1 3.6495 -5.0959 1.6769 33 1 3.8951 -6.9189 1.5432 34 1 4.3511 -6.6753 -0.9406 35 1 4.1053 -4.8525 -0.8077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334893901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:18 Heat of formation + Delta-G solvation = -17.088721 kcal Electronic energy + Delta-G solvation = -21217.996776 eV Core-core repulsion = 17822.686717 eV Total energy + Delta-G solvation = -3395.310059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.12571 -39.78800 -37.42691 -36.90772 -35.58481 -33.74393 -32.55064 -32.35595 -28.24670 -27.49910 -25.81074 -24.74226 -22.76896 -21.47444 -21.25409 -19.27915 -18.48185 -17.54448 -16.82394 -16.49743 -16.23658 -15.56262 -15.31739 -15.09572 -14.66868 -14.18140 -13.95333 -13.59689 -13.23955 -12.95381 -12.76346 -12.69294 -12.13435 -11.87136 -11.80563 -11.55362 -11.28607 -10.93613 -10.69431 -10.53260 -10.52690 -10.31198 -10.00949 -9.79914 -9.59776 -9.35285 -9.15307 -8.80564 -8.43417 -6.33534 -4.27802 0.20151 0.51705 1.48019 2.41410 2.63683 3.14772 3.23295 3.27028 3.28868 4.01283 4.19162 4.31907 4.38172 4.55567 4.61538 4.64624 5.11179 5.22664 5.28672 5.35262 5.48620 5.57940 5.64115 5.70464 5.83989 5.94503 6.05456 6.14581 6.41921 6.50457 6.58200 6.77299 6.90568 7.14542 7.24290 7.51516 7.77956 8.31581 8.71917 9.28500 10.78515 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019975 B = 0.004733 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.415495 B = 5913.901247 C = 7061.659734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.071 4.071 3 C 0.111 3.889 4 N -0.455 5.455 5 C 0.156 3.844 6 Cl -0.022 7.022 7 C -0.093 4.093 8 C -0.064 4.064 9 C 0.501 3.499 10 O -0.490 6.490 11 O -0.343 6.343 12 C 0.087 3.913 13 C 0.004 3.996 14 C -0.483 4.483 15 H 0.087 0.913 16 C 0.079 3.921 17 N -0.881 5.881 18 Si 0.869 3.131 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.258 1.258 22 C -0.199 4.199 23 C -0.178 4.178 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.175 0.825 28 H 0.164 0.836 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.269 0.731 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 19.269 0.938 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.073 4.073 3 C -0.047 4.047 4 N -0.166 5.166 5 C -0.008 4.008 6 Cl 0.006 6.994 7 C -0.114 4.114 8 C -0.074 4.074 9 C 0.344 3.656 10 O -0.379 6.379 11 O -0.258 6.258 12 C 0.016 3.984 13 C 0.003 3.997 14 C -0.520 4.520 15 H 0.105 0.895 16 C -0.125 4.125 17 N -0.516 5.516 18 Si 0.699 3.301 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.184 1.184 22 C -0.237 4.237 23 C -0.215 4.215 24 H 0.104 0.896 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.192 0.808 28 H 0.181 0.819 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.199 19.840 0.910 20.530 hybrid contribution -0.811 -0.279 0.635 1.068 sum 4.388 19.561 1.545 20.107 Atomic orbital electron populations 1.21056 0.88226 1.03953 1.04453 1.21248 0.98990 0.92006 0.95099 1.22622 0.87831 0.97678 0.96607 1.66872 1.08636 1.30741 1.10356 1.21501 0.88035 0.89538 1.01685 1.98421 1.05887 1.98582 1.96504 1.22249 0.93953 0.98809 0.96344 1.19455 0.92916 0.91639 1.03347 1.20816 0.85732 0.84893 0.74172 1.90813 1.14683 1.87822 1.44563 1.86498 1.43238 1.14987 1.81120 1.23704 0.94690 0.77847 1.02190 1.19382 0.86797 0.92549 1.01021 1.20288 0.99956 0.94152 1.37621 0.89518 1.24996 0.96685 0.95402 0.95461 1.69891 1.13081 1.26766 1.41899 0.87205 0.79802 0.80516 0.82563 1.19872 1.21560 1.18418 1.23125 1.07885 1.01016 0.91667 1.22748 1.01050 1.00658 0.97073 0.89595 0.88541 0.91117 0.80794 0.81860 0.91412 0.90230 0.92049 0.90974 0.89599 0.89840 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.80 36.00 0.32 -0.89 16 2 C -0.07 -0.80 5.93 -104.05 -0.62 -1.42 16 3 C 0.11 1.08 10.83 -17.59 -0.19 0.89 16 4 N -0.46 -5.35 10.31 -10.41 -0.11 -5.45 16 5 C 0.16 1.86 7.27 -17.49 -0.13 1.74 16 6 Cl -0.02 -0.24 29.10 -51.86 -1.51 -1.75 16 7 C -0.09 -1.15 9.47 -38.96 -0.37 -1.52 16 8 C -0.06 -0.87 5.91 -104.67 -0.62 -1.49 16 9 C 0.50 8.48 7.85 34.75 0.27 8.75 16 10 O -0.49 -9.15 13.34 -19.21 -0.26 -9.40 16 11 O -0.34 -6.39 7.87 -40.41 -0.32 -6.71 16 12 C 0.09 1.91 4.15 37.16 0.15 2.07 16 13 C 0.00 0.08 1.85 -155.66 -0.29 -0.21 16 14 C -0.48 -13.07 9.57 -34.44 -0.33 -13.40 16 15 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 16 C 0.08 2.19 5.42 -17.82 -0.10 2.09 16 17 N -0.88 -25.74 13.96 55.43 0.77 -24.97 16 18 Si 0.87 21.12 24.21 -169.99 -4.11 17.01 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.26 -6.06 6.38 56.52 0.36 -5.70 16 22 C -0.20 -4.09 9.67 -26.70 -0.26 -4.35 16 23 C -0.18 -3.53 9.63 -26.69 -0.26 -3.78 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.10 1.21 6.02 -51.93 -0.31 0.90 16 26 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 27 H 0.18 1.08 8.06 -52.48 -0.42 0.65 16 28 H 0.16 1.92 7.73 -52.49 -0.41 1.51 16 29 H 0.07 1.58 2.61 -51.93 -0.14 1.44 16 30 H 0.08 1.77 8.10 -51.93 -0.42 1.35 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.38 7.84 -51.93 -0.41 0.97 16 33 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 34 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.08 1.39 7.49 -51.93 -0.39 1.00 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -29.52 312.41 -7.01 -36.53 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.78 Total: 1.56 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -2.41 Total: -11.52 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.67 Total: -30.42 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.57 Total: -16.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.11 Total: 17.01 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.51 Total: -1.75 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.52 -7.01 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334893901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.441 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds